Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 5.2e-119 431.0 211 100.0
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 6.5e-13 78.6 62 69.4
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.6e-11 73.9 61 63.9
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 8.0e-11 71.6 72 54.2
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 8.0e-11 71.6 72 54.2
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.3e-10 70.1 62 62.9
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.0e-09 67.0 74 50.0
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 2.6e-09 66.6 72 54.2
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.5e-09 65.1 48 70.8
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.7e-08 63.9 54 66.7
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.7e-08 63.9 61 63.9
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.2e-08 63.5 67 58.2
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.8e-08 63.2 69 49.3
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 3.7e-08 62.8 67 55.2
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 4.8e-08 62.4 53 64.2
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 4.8e-08 62.4 68 54.4
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 6.3e-08 62.0 61 57.4
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 6.3e-08 62.0 55 60.0
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 6.3e-08 62.0 63 55.6
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.1e-07 61.2 49 67.3
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.8e-07 60.5 54 63.0
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 2.4e-07 60.1 62 54.8
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 2.4e-07 60.1 52 63.5
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 3.1e-07 59.7 60 56.7
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 3.1e-07 59.7 60 56.7
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 3.1e-07 59.7 60 56.7
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 4.1e-07 59.3 61 59.0
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 4.1e-07 59.3 60 56.7
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 4.1e-07 59.3 60 56.7
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 4.1e-07 59.3 54 61.1
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 5.4e-07 58.9 62 54.8
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.4e-07 58.9 55 63.6
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 5.4e-07 58.9 66 54.5
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 5.4e-07 58.9 48 68.8
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 9.1e-07 58.2 49 63.3
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 9.1e-07 58.2 41 73.2
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 9.1e-07 58.2 72 47.2
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 9.1e-07 58.2 42 76.2
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 9.1e-07 58.2 50 66.0
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.2e-06 57.8 65 56.9
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.2e-06 57.8 42 76.2
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 2.0e-06 57.0 59 55.9
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 2.0e-06 57.0 65 55.4
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.0e-06 57.0 48 66.7
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.7e-06 56.6 44 70.5
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 2.7e-06 56.6 42 73.8
QL05p070437 Quercus lobata HOM05D000097 ORTHO05D000041 2.7e-06 56.6 102 38.2
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 3.5e-06 56.2 53 64.2
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 3.5e-06 56.2 69 49.3
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 3.5e-06 56.2 62 58.1
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 4.5e-06 55.8 53 64.2
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 4.5e-06 55.8 58 56.9
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 5.9e-06 55.5 53 58.5
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 5.9e-06 55.5 52 57.7
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 5.9e-06 55.5 51 62.7
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 5.9e-06 55.5 59 55.9
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 5.9e-06 55.5 42 73.8
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.7e-06 55.1 54 57.4
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.7e-06 55.1 54 57.4
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 7.7e-06 55.1 51 58.8
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 7.7e-06 55.1 61 50.8
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.7e-06 55.1 73 52.1


User provided reference genes

Program Settings