Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.0e-45 186.4 96 100.0
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.8e-19 98.6 58 82.8
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.5e-17 92.8 58 77.6
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 3.4e-17 91.7 58 74.1
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.4e-17 91.7 58 72.4
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 7.6e-17 90.5 57 75.4
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 9.9e-17 90.1 58 75.9
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 9.9e-17 90.1 58 75.9
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.7e-16 89.4 58 72.4
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.1e-15 86.7 57 73.7
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 3.2e-15 85.1 61 65.6
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.1e-15 84.7 57 71.9
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 5.4e-15 84.3 57 70.2
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 5.4e-15 84.3 58 70.7
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 7.1e-15 84.0 44 84.1
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 9.2e-15 83.6 58 69.0
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.2e-14 83.2 57 66.7
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.6e-14 82.8 44 81.8
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.6e-14 82.8 56 71.4
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.1e-14 82.4 46 78.3
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 2.1e-14 82.4 44 79.5
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.1e-14 82.4 57 68.4
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.7e-14 82.0 58 67.2
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.7e-14 82.0 44 79.5
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.5e-14 81.6 58 67.2
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.5e-14 81.6 58 67.2
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 3.5e-14 81.6 58 67.2
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.5e-14 81.6 58 65.5
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 4.6e-14 81.3 44 79.5
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.6e-14 81.3 44 77.3
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 4.6e-14 81.3 44 84.1
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 4.6e-14 81.3 44 79.5
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 6.0e-14 80.9 57 66.7
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 6.0e-14 80.9 56 69.6
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 6.0e-14 80.9 44 81.8
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 6.0e-14 80.9 43 81.4
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 6.0e-14 80.9 61 65.6
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 6.0e-14 80.9 44 79.5
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.0e-14 80.9 43 81.4
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 7.8e-14 80.5 44 81.8
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 7.8e-14 80.5 57 64.9
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 7.8e-14 80.5 43 81.4
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 7.8e-14 80.5 43 81.4
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.8e-14 80.5 43 81.4
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.0e-13 80.1 58 65.5
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.0e-13 80.1 42 83.3
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.0e-13 80.1 42 83.3
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.0e-13 80.1 42 83.3
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.0e-13 80.1 57 68.4
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.0e-13 80.1 57 68.4
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.0e-13 80.1 57 68.4
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.3e-13 79.7 43 81.4
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.3e-13 79.7 44 81.8
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.3e-13 79.7 61 63.9
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.3e-13 79.7 44 81.8
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.7e-13 79.3 44 77.3
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-13 79.3 58 63.8
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-13 79.3 58 63.8
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-13 79.3 58 63.8
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-13 79.3 58 63.8
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.7e-13 79.3 58 63.8
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.7e-13 79.3 57 68.4
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.3e-13 79.0 57 66.7
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.3e-13 79.0 43 79.1
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 2.3e-13 79.0 58 63.8
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.0e-13 78.6 44 75.0
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 3.9e-13 78.2 44 77.3
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 3.9e-13 78.2 40 82.5
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.9e-13 78.2 44 77.3
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 3.9e-13 78.2 57 63.2
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 5.1e-13 77.8 43 76.7
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 5.1e-13 77.8 58 63.8
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 8.6e-13 77.0 43 79.1
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 8.6e-13 77.0 43 79.1
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.6e-13 77.0 42 81.0
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.1e-12 76.6 44 75.0
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.1e-12 76.6 42 76.2
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.1e-12 76.6 44 79.5
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.5e-12 76.3 57 66.7
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.9e-12 75.9 41 80.5
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.9e-12 75.9 40 80.0
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.9e-12 75.9 44 75.0
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 2.5e-12 75.5 56 62.5
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 2.5e-12 75.5 56 62.5
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.5e-12 75.5 43 79.1
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.5e-12 75.5 41 80.5
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.5e-12 75.5 44 75.0
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.5e-12 75.5 42 76.2
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.3e-12 75.1 40 80.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.3e-12 75.1 42 73.8
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 3.3e-12 75.1 43 74.4
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 5.6e-12 74.3 44 77.3
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 7.3e-12 73.9 41 75.6
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.2e-11 73.2 43 76.7
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.6e-11 72.8 42 73.8
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.1e-11 72.4 39 76.9
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 2.1e-11 72.4 40 77.5
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.8e-11 72.0 43 72.1
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.8e-11 72.0 58 55.2
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.8e-11 72.0 40 77.5
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.6e-11 71.6 42 71.4
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.6e-11 71.6 42 71.4
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 6.2e-11 70.9 39 74.4
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 6.2e-11 70.9 40 75.0
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 8.1e-11 70.5 40 77.5
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 8.1e-11 70.5 52 61.5
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.4e-10 69.7 42 66.7
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.4e-10 68.9 75 48.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.1e-10 68.6 40 75.0
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.1e-10 68.6 41 70.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 6.8e-10 67.4 39 74.4
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.2e-09 66.6 40 70.0
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.0e-09 65.9 40 70.0
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 5.8e-09 64.3 60 46.7
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 5.8e-09 64.3 40 67.5
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.6e-09 63.9 60 46.7
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.3e-08 63.2 60 45.0
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.7e-08 62.8 43 60.5
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.4e-07 59.7 43 58.1
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.6e-06 56.2 78 39.7


User provided reference genes

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