Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 2.8e-131 471.9 225 100.0
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 7.2e-119 430.6 224 89.3
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 3.0e-117 425.2 224 89.7
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.5e-116 422.9 224 87.9
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.0e-116 422.5 224 86.6
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 2.0e-116 422.5 224 88.8
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.6e-116 422.2 224 88.8
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 2.6e-116 422.2 224 87.9
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 2.6e-116 422.2 224 89.3
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 3.4e-116 421.8 224 88.4
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 2.2e-115 419.1 224 88.4
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 6.3e-115 417.5 224 87.5
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.1e-114 416.8 224 87.1
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.1e-114 416.8 224 85.7
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.4e-114 416.4 221 87.3
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.4e-114 416.4 221 87.3
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.8e-114 416.0 224 87.1
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 2.4e-114 415.6 224 85.3
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 3.1e-114 415.2 224 87.1
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 3.1e-114 415.2 224 86.2
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 3.1e-114 415.2 224 86.2
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 7.0e-114 414.1 223 87.0
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 7.0e-114 414.1 224 85.7
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 9.1e-114 413.7 224 86.6
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.2e-113 413.3 221 87.8
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.2e-113 413.3 224 86.2
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.2e-113 413.3 224 85.7
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.2e-113 413.3 224 86.2
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.6e-113 412.9 221 86.4
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.6e-113 412.9 221 86.4
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.6e-113 412.9 221 86.4
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.6e-113 412.9 221 87.3
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.6e-113 412.9 224 85.7
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 2.0e-113 412.5 224 85.3
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.0e-113 412.5 224 85.7
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 2.7e-113 412.1 224 85.3
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 3.5e-113 411.8 223 85.7
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.5e-113 411.8 224 86.6
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 4.5e-113 411.4 221 86.9
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 4.5e-113 411.4 224 86.6
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.5e-113 411.4 224 85.7
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 5.9e-113 411.0 224 87.1
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 7.7e-113 410.6 224 85.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 7.7e-113 410.6 224 85.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.0e-112 410.2 223 85.2
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.0e-112 410.2 224 85.3
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.3e-112 409.8 220 86.8
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.3e-112 409.8 223 85.2
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.7e-112 409.5 224 85.7
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.7e-112 409.5 220 85.9
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.7e-112 409.5 224 85.3
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 1.7e-112 409.5 224 84.4
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 2.2e-112 409.1 220 85.9
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 2.2e-112 409.1 225 85.3
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.9e-112 408.7 225 84.0
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 5.0e-112 407.9 224 86.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 5.0e-112 407.9 224 83.9
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 5.0e-112 407.9 224 84.8
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 6.5e-112 407.5 221 86.0
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 6.5e-112 407.5 224 85.3
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.1e-111 406.8 223 83.4
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.9e-111 406.0 221 85.5
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 2.5e-111 405.6 224 83.9
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 3.2e-111 405.2 210 89.5
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.2e-111 405.2 224 83.9
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 4.2e-111 404.8 224 85.3
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 4.2e-111 404.8 223 84.8
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 5.5e-111 404.4 220 85.0
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 9.4e-111 403.7 224 84.8
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 9.4e-111 403.7 224 83.0
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 9.4e-111 403.7 223 83.4
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.2e-110 403.3 223 85.2
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.2e-110 403.3 220 84.5
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.6e-110 402.9 224 84.4
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.6e-110 402.9 210 89.0
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.1e-110 402.5 223 84.3
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.7e-110 402.1 224 83.0
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 2.7e-110 402.1 238 80.7
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 3.6e-110 401.7 221 86.0
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 3.6e-110 401.7 221 83.3
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 4.7e-110 401.4 224 84.8
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 4.7e-110 401.4 224 82.6
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 4.7e-110 401.4 225 83.1
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 8.0e-110 400.6 218 85.3
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 8.0e-110 400.6 223 83.4
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.0e-109 400.2 221 82.8
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.0e-109 400.2 224 82.6
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.8e-109 399.4 223 83.4
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 2.3e-109 399.1 219 85.8
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 2.3e-109 399.1 224 83.5
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 4.0e-109 398.3 224 83.9
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 5.2e-109 397.9 224 82.1
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 5.2e-109 397.9 224 82.1
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.2e-109 397.9 224 82.6
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 8.8e-109 397.1 220 83.2
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.5e-108 396.4 224 82.6
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.4e-108 395.2 221 82.8
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 4.4e-108 394.8 224 82.6
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 5.7e-108 394.4 251 75.3
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 7.5e-108 394.0 220 83.2
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 7.5e-108 394.0 220 83.2
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.3e-107 393.3 220 83.2
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 1.7e-107 392.9 221 82.4
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 4.9e-107 391.3 213 85.4
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 6.3e-107 391.0 221 81.0
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 6.3e-107 391.0 223 82.1
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 6.3e-107 391.0 222 82.4
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 8.3e-107 390.6 220 82.7
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 1.1e-106 390.2 221 84.2
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.4e-106 389.8 221 81.4
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.4e-106 389.0 219 81.7
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 2.4e-106 389.0 216 82.4
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.1e-106 388.7 242 76.4
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.5e-105 384.8 279 68.5
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 7.7e-105 384.0 224 82.6
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.0e-104 383.6 216 81.5
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.3e-99 366.7 205 83.9
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.9e-99 365.5 218 74.3
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.8e-93 346.3 228 73.2
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 5.2e-93 344.7 221 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 5.8e-92 341.3 221 69.7
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 1.7e-88 329.7 218 67.4
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.3e-87 325.5 218 67.9
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 2.3e-80 302.8 169 81.7
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 9.5e-79 297.4 164 87.2
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.0e-76 289.7 163 84.7
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.6e-76 289.3 153 85.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 8.4e-75 284.3 162 77.2
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 8.6e-72 274.2 215 59.1
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 8.1e-70 267.7 131 91.6
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.1e-66 254.6 163 73.0
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 3.3e-63 245.7 218 54.6
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 2.1e-62 243.0 217 55.8
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.2e-57 227.3 128 78.9
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 5.6e-55 218.4 212 48.6
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.6e-54 216.9 115 82.6
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 3.6e-54 215.7 111 91.9
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 4.5e-52 208.8 148 74.3
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 1.3e-51 207.2 112 79.5
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 4.5e-44 182.2 130 60.8
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.8e-40 170.2 88 83.0
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 6.7e-40 168.3 102 78.4
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 3.8e-35 152.5 217 38.2
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 2.8e-30 136.3 97 74.2
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.2e-28 131.0 134 49.3
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.0e-27 127.9 75 82.7
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.0e-27 125.6 66 84.8
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 5.5e-26 122.1 61 91.8
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 1.4e-24 117.5 83 62.7
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.4e-24 117.5 78 78.2
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.2e-22 108.2 59 72.9
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 3.4e-20 102.8 54 85.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.7e-19 100.5 61 85.2
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.9e-19 99.8 61 82.0
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 8.5e-19 98.2 64 75.0
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.1e-18 97.8 61 82.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.6e-17 94.0 64 75.0
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 2.0e-15 87.0 100 48.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.8e-14 82.4 128 43.8
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 8.2e-14 81.6 54 79.6
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.0e-12 77.0 50 74.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.2e-09 67.8 39 74.4
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.7e-06 56.2 35 74.3


User provided reference genes

Program Settings