Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 6.7e-84 313.9 154 100.0
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 6.7e-84 313.9 154 100.0
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 9.5e-54 213.8 147 76.2
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.6e-53 211.8 147 72.8
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.6e-53 211.8 147 72.8
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 6.8e-52 207.6 147 72.1
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 6.8e-52 207.6 150 71.3
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 2.6e-51 205.7 147 71.4
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.6e-51 205.7 147 70.7
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 5.8e-51 204.5 151 68.9
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 9.8e-51 203.8 153 70.6
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.3e-50 203.4 153 69.9
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.3e-50 203.4 153 70.6
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 2.9e-50 202.2 151 71.5
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.9e-50 201.4 146 69.9
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.9e-50 201.4 146 69.9
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 4.9e-50 201.4 146 69.9
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 8.3e-50 200.7 139 74.1
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 8.3e-50 200.7 139 74.1
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.9e-49 199.5 147 70.1
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 4.1e-49 198.4 150 68.0
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 5.4e-49 198.0 151 68.9
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 9.2e-49 197.2 140 72.9
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.2e-48 196.8 147 72.1
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 4.6e-48 194.9 151 67.5
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 7.8e-48 194.1 147 68.0
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 7.8e-48 194.1 144 69.4
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.7e-47 193.0 149 67.8
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 2.3e-47 192.6 138 71.7
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.3e-47 192.6 152 67.1
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 3.0e-47 192.2 153 65.4
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 5.0e-47 191.4 146 67.8
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.9e-46 189.5 147 68.0
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 3.3e-46 188.7 153 64.1
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 5.6e-46 188.0 149 66.4
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 5.6e-46 188.0 149 67.1
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 7.3e-46 187.6 149 67.1
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 2.8e-45 185.7 157 62.4
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 3.6e-45 185.3 147 68.7
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 4.7e-45 184.9 151 64.2
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 4.7e-45 184.9 146 65.8
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 4.7e-45 184.9 143 66.4
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 6.2e-45 184.5 146 63.0
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 8.1e-45 184.1 152 67.1
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 8.1e-45 184.1 138 68.1
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.8e-44 183.0 153 64.7
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 3.1e-44 182.2 147 66.0
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 3.1e-44 182.2 151 67.5
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 4.0e-44 181.8 143 67.8
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 5.2e-44 181.4 144 66.7
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 5.2e-44 181.4 144 63.9
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 6.8e-44 181.0 138 68.1
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 6.8e-44 181.0 139 68.3
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 1.2e-43 180.3 154 64.9
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 2.6e-43 179.1 150 65.3
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 2.6e-43 179.1 145 64.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 2.6e-43 179.1 149 65.1
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 9.8e-43 177.2 144 66.7
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 9.8e-43 177.2 138 66.7
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 1.7e-42 176.4 138 67.4
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.7e-42 176.4 144 67.4
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 2.2e-42 176.0 149 65.1
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 2.9e-42 175.6 136 69.1
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 4.9e-42 174.9 140 66.4
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 4.9e-42 174.9 138 65.2
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.1e-41 173.7 145 61.4
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 2.4e-41 172.6 137 67.2
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 2.4e-41 172.6 148 62.8
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.2e-41 172.2 179 55.3
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 3.2e-41 172.2 144 62.5
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 7.1e-41 171.0 139 67.6
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.2e-40 170.2 150 61.3
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.6e-40 169.9 138 66.7
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 6.0e-40 167.9 147 64.6
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 7.8e-40 167.5 135 66.7
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 7.8e-40 167.5 135 65.9
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.0e-39 167.2 147 62.6
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 1.3e-39 166.8 152 59.2
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.7e-39 166.4 140 64.3
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.9e-39 165.2 139 64.0
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 1.9e-38 162.9 139 61.2
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.3e-38 162.2 139 63.3
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 5.6e-38 161.4 152 59.9
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 1.2e-37 160.2 155 59.4
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 2.8e-37 159.1 153 55.6
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 4.7e-37 158.3 141 61.0
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 4.7e-37 158.3 143 60.8
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.1e-36 157.1 143 60.1
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.4e-36 156.8 141 58.2
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.1e-36 155.6 137 62.8
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 1.2e-35 153.7 139 57.6
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 2.6e-35 152.5 164 55.5
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 5.8e-35 151.4 138 55.8
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 2.9e-34 149.1 144 54.9
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 3.7e-34 148.7 149 55.0
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.1e-33 147.1 138 56.5
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.4e-33 146.7 139 56.8
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 2.4e-33 146.0 131 59.5
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 7.1e-33 144.4 142 56.3
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.6e-32 143.3 121 65.3
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 2.1e-32 142.9 140 54.3
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 6.0e-32 141.4 148 54.7
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 6.0e-32 141.4 121 64.5
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 7.8e-32 141.0 149 55.0
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 2.3e-31 139.4 154 53.9
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 2.5e-30 136.0 146 50.0
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 3.3e-30 135.6 111 64.9
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.3e-30 135.2 140 54.3
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 7.3e-30 134.4 113 61.1
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.2e-29 133.7 179 46.9
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 2.8e-29 132.5 74 82.4
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 6.8e-28 127.9 108 60.2
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 6.8e-28 127.9 148 51.4
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 2.6e-27 125.9 153 48.4
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.6e-27 125.9 149 51.7
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 4.4e-27 125.2 111 57.7
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 5.8e-27 124.8 149 51.7
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 1.1e-25 120.6 68 80.9
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.6e-24 116.7 125 52.8
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 6.0e-24 114.8 68 75.0
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 8.7e-23 110.9 130 49.2
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.5e-22 109.4 107 55.1
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 2.6e-19 99.4 92 58.7
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.2e-18 96.3 134 50.0
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.7e-15 86.7 51 78.4
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 5.6e-14 81.6 93 55.9
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 3.6e-13 79.0 48 72.9
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 2.0e-11 73.2 49 65.3
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-10 69.3 59 66.1
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 3.8e-10 68.9 64 59.4
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 3.2e-09 65.9 90 40.0
Nn3g16162 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.9e-06 56.6 30 93.3
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 2.5e-06 56.2 50 58.0


User provided reference genes

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