Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 0.0e+00 1190.3 630 100.0
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 0.0e+00 1180.6 630 99.2
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 4.1e-297 1024.2 637 81.8
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.4e-273 944.1 636 78.5
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 6.0e-272 940.6 627 76.1
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 3.0e-271 938.3 637 76.0
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 5.3e-268 927.5 626 74.8
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 9.0e-268 926.8 630 73.7
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.9e-265 919.1 638 76.2
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 5.4e-265 917.5 650 74.0
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.9e-262 909.1 629 73.3
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.6e-261 906.0 634 73.2
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 2.1e-261 905.6 630 72.9
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.8e-260 902.5 631 73.2
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.0e-258 896.7 629 73.6
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 4.9e-258 894.4 633 72.7
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.1e-257 893.3 634 72.6
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.4e-257 892.9 630 73.7
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 3.2e-257 891.7 634 71.6
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 7.1e-257 890.6 630 73.0
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 1.3e-255 886.3 634 70.8
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.9e-255 884.8 629 70.9
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 8.7e-255 883.6 629 70.9
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.9e-254 882.5 631 71.0
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 7.4e-254 880.6 631 71.5
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.8e-253 878.6 629 72.0
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 3.7e-253 878.2 634 70.5
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.4e-252 876.3 634 70.8
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 9.0e-252 873.6 630 70.6
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 3.4e-251 871.7 633 71.1
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.8e-250 868.2 609 71.8
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.1e-249 866.7 635 70.6
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 2.5e-246 855.5 582 75.4
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 3.3e-246 855.1 634 67.8
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.3e-245 853.2 583 77.2
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 6.3e-245 850.9 634 71.5
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.8e-244 849.4 633 68.7
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.9e-242 842.0 633 69.2
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 3.8e-242 841.6 633 68.6
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 6.5e-242 840.9 634 67.8
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 1.2e-240 836.6 635 69.6
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 6.7e-239 830.9 610 68.7
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 6.7e-239 830.9 633 66.4
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.1e-238 830.1 629 66.3
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 4.3e-238 828.2 610 68.9
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 5.7e-238 827.8 610 68.4
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 2.2e-237 825.9 630 66.5
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 2.8e-237 825.5 631 66.7
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 6.3e-237 824.3 631 67.4
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 7.7e-235 817.4 636 65.6
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 1.7e-234 816.2 635 66.5
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 5.0e-234 814.7 628 66.4
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 2.5e-233 812.4 629 66.8
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 5.5e-233 811.2 610 67.5
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 7.2e-233 810.8 632 64.7
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 9.4e-233 810.4 613 67.2
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.6e-232 809.7 627 66.7
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 6.1e-232 807.7 627 66.2
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 3.0e-231 805.4 639 67.8
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 3.9e-231 805.1 629 64.9
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 2.6e-230 802.4 629 65.8
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.4e-230 800.8 631 66.1
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 6.3e-229 797.7 633 63.8
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 7.0e-228 794.3 636 65.1
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 9.1e-228 793.9 632 64.2
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.5e-227 793.1 631 62.8
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 4.5e-227 791.6 633 63.8
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 7.7e-227 790.8 630 64.4
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.7e-227 790.8 638 66.0
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 1.5e-225 786.6 740 58.6
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 2.5e-225 785.8 633 63.0
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.2e-224 783.5 632 65.7
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.2e-224 783.5 632 65.8
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 3.9e-223 778.5 620 63.9
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 6.7e-223 777.7 620 63.7
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 3.3e-222 775.4 629 63.0
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 7.4e-222 774.2 643 64.4
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 1.3e-221 773.5 564 67.9
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 3.7e-221 771.9 609 66.2
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.4e-220 769.2 669 59.8
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 7.0e-220 767.7 680 59.4
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 3.5e-219 765.4 636 64.5
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.3e-218 763.5 633 61.5
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 2.2e-218 762.7 631 62.9
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 3.6e-216 755.4 655 61.4
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.6e-216 755.4 638 63.6
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.4e-212 741.5 650 61.2
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 2.0e-211 739.6 693 57.0
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.8e-210 735.3 632 61.9
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 6.5e-210 734.6 676 58.0
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.5e-209 732.6 632 61.7
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 8.0e-208 727.6 636 61.9
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 4.0e-207 725.3 632 59.5
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.2e-206 723.8 739 55.6
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.2e-205 719.5 641 58.7
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 8.3e-197 691.0 672 59.8
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 2.4e-196 689.5 530 65.3
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 3.5e-195 685.6 655 54.2
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.3e-193 679.1 625 57.6
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.2e-187 660.6 632 56.0
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.3e-186 656.4 553 58.8
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 3.0e-186 656.0 637 55.6
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 6.0e-179 631.7 608 54.6
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 3.1e-175 619.4 564 55.7
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 5.2e-175 618.6 567 55.7
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 8.4e-165 584.7 523 59.7
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-142 511.1 413 65.4
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.2e-139 501.1 449 58.8
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.3e-138 496.9 412 64.6
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.5e-134 482.6 402 64.2
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.5e-132 476.9 412 62.1
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-127 461.5 413 61.5
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.4e-127 461.1 324 67.9
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.1e-127 459.9 413 60.5
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 7.9e-123 445.3 339 63.7
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.0e-122 443.4 416 58.4
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.4e-119 434.5 384 56.5
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.4e-119 433.7 459 52.3
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-114 417.9 403 57.3
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 5.7e-113 412.5 455 52.1
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.1e-111 405.2 415 54.7
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.6e-94 351.3 205 82.4
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.7e-93 347.8 551 34.7
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 2.6e-89 334.0 556 34.0
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 7.5e-89 332.4 209 84.7
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.5e-84 315.5 521 38.8
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 2.0e-73 281.2 256 57.4
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.9e-72 277.3 519 32.2
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.9e-72 277.3 518 31.3
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.0e-66 256.9 237 58.2
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 9.8e-65 252.3 237 58.6
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 2.4e-63 247.7 167 73.1
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 2.7e-62 244.2 425 37.6
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 2.4e-55 221.1 524 27.3
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 7.6e-41 172.9 135 65.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.4e-39 168.7 137 63.5
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.4e-39 167.9 98 78.6
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 7.4e-36 156.4 89 87.6
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 5.3e-34 150.2 109 67.0
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 5.8e-33 146.7 107 67.3
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.8e-29 135.2 98 66.3
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 2.8e-27 127.9 156 44.9
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.3e-26 123.6 94 62.8
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 3.4e-25 120.9 80 73.8
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 4.9e-24 117.1 86 61.6
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.4e-23 115.5 96 56.2
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 6.3e-19 100.1 69 65.2
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 6.3e-19 100.1 69 65.2
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 5.9e-17 93.6 69 62.3
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.6e-14 85.5 180 35.0
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.8e-13 82.0 45 77.8
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.8e-13 82.0 45 77.8
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.5e-12 79.0 48 75.0
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 4.3e-12 77.4 96 49.0
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.1e-10 72.8 52 63.5
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 7.7e-09 66.6 375 22.9
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 2.2e-08 65.1 53 54.7
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 1.4e-07 62.4 384 21.6
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 3.6e-06 57.8 236 24.2
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 6.1e-06 57.0 395 21.3
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 7.9e-06 56.6 172 26.2


User provided reference genes

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