Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 2.0e-43 178.7 89 100.0
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-36 156.0 89 87.6
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-36 156.0 89 87.6
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 5.2e-36 154.1 89 86.5
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.1e-30 136.3 89 74.2
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.7e-29 131.7 89 71.9
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 2.7e-29 131.7 89 69.7
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 3.6e-29 131.3 88 70.5
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 8.0e-29 130.2 89 70.8
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 8.0e-29 130.2 88 71.6
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.0e-28 129.8 89 69.7
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.0e-28 129.8 89 70.8
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 3.0e-28 128.3 88 69.3
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 5.2e-28 127.5 89 69.7
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 5.2e-28 127.5 89 69.7
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 6.7e-28 127.1 89 67.4
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 6.7e-28 127.1 89 67.4
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.5e-27 125.9 89 68.5
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.5e-27 125.9 89 66.3
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.5e-27 125.9 89 65.2
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 2.0e-27 125.6 89 67.4
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 2.0e-27 125.6 89 66.3
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 2.6e-27 125.2 89 65.2
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 3.3e-27 124.8 89 66.3
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 3.3e-27 124.8 89 66.3
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 5.7e-27 124.0 89 65.2
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 7.5e-27 123.6 89 66.3
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 7.5e-27 123.6 89 68.5
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 7.5e-27 123.6 89 68.5
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.3e-26 122.9 89 65.2
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.7e-26 122.5 89 64.0
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 2.2e-26 122.1 89 62.9
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 2.2e-26 122.1 89 65.2
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.2e-26 122.1 89 62.9
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 3.7e-26 121.3 87 67.8
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 4.8e-26 120.9 89 62.9
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 4.8e-26 120.9 89 61.8
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.8e-26 120.9 89 66.3
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 8.3e-26 120.2 89 62.9
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 8.3e-26 120.2 89 61.8
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 8.3e-26 120.2 89 61.8
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 8.3e-26 120.2 89 66.3
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.4e-25 119.4 89 62.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.4e-25 119.4 89 69.7
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.4e-25 119.4 89 62.9
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.4e-25 119.4 90 67.8
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.4e-25 119.4 89 64.0
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 1.8e-25 119.0 89 60.7
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.8e-25 119.0 89 60.7
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.8e-25 119.0 89 62.9
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 2.4e-25 118.6 89 59.6
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.4e-25 118.6 89 64.0
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 5.3e-25 117.5 89 65.2
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 7.0e-25 117.1 90 66.7
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 9.1e-25 116.7 87 65.5
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.2e-24 116.3 89 61.8
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.0e-24 115.5 89 65.2
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.7e-24 115.2 89 59.6
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.7e-24 115.2 89 59.6
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 2.7e-24 115.2 89 60.7
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 3.5e-24 114.8 89 60.7
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 3.5e-24 114.8 85 64.7
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 5.9e-24 114.0 89 59.6
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.9e-24 114.0 89 61.8
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.9e-24 114.0 89 61.8
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 7.7e-24 113.6 89 60.7
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.0e-23 113.2 89 59.6
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.3e-23 112.8 89 61.8
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 2.2e-23 112.1 89 60.7
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.9e-23 111.7 88 59.1
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.9e-23 111.7 89 60.7
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 2.9e-23 111.7 89 60.7
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.8e-23 111.3 89 58.4
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 8.5e-23 110.2 87 59.8
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.5e-22 109.4 87 59.8
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.5e-22 109.4 89 59.6
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.2e-21 106.3 85 60.0
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 2.1e-21 105.5 77 63.6
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 2.1e-21 105.5 89 56.2
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 2.1e-21 105.5 86 58.1
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.7e-21 105.1 86 59.3
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 6.1e-21 104.0 96 55.2
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.4e-20 102.8 89 55.1
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 2.3e-20 102.1 87 55.2
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 2.3e-20 102.1 89 57.3
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 3.0e-20 101.7 87 56.3
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 3.0e-20 101.7 78 59.0
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 2.6e-19 98.6 88 52.3
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 3.4e-19 98.2 89 55.1
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 4.4e-19 97.8 75 61.3
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 4.4e-19 97.8 74 56.8
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 4.4e-19 97.8 87 48.3
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 7.5e-19 97.1 75 61.3
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 7.5e-19 97.1 88 53.4
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.7e-18 95.9 74 58.1
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.2e-18 95.5 90 54.4
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.7e-18 94.7 75 56.0
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.1e-17 93.2 89 49.4
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.1e-17 93.2 89 52.8
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.4e-17 92.8 88 51.1
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.4e-17 92.8 88 53.4
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 2.4e-17 92.0 89 48.3
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.1e-17 91.7 86 46.5
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 5.4e-17 90.9 74 54.1
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 5.9e-16 87.4 89 44.9
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 7.7e-16 87.0 89 47.2
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 8.6e-15 83.6 89 44.9
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 1.1e-14 83.2 75 50.7
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.5e-14 82.0 63 61.9
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 5.5e-14 80.9 78 52.6
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.1e-13 79.0 75 48.0
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 8.0e-13 77.0 67 56.7
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.8e-12 75.9 76 51.3
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.7e-10 69.3 78 41.0
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.5e-08 61.6 75 48.0
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.1e-06 56.6 48 50.0


User provided reference genes

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