Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p072049 Quercus lobata HOM05D002734 ORTHO05D003035 5.7e-45 183.7 84 100.0
QL03p072395 Quercus lobata HOM05D002734 ORTHO05D003035 1.4e-11 72.8 33 90.9
QL03p072417 Quercus lobata HOM05D002734 ORTHO05D003035 2.4e-11 72.0 36 86.1
QL03p072025 Quercus lobata HOM05D002734 ORTHO05D003035 2.7e-10 68.6 47 66.0
QL03p072372 Quercus lobata HOM05D002734 ORTHO05D003035 2.7e-10 68.6 47 66.0
QL03p071875 Quercus lobata HOM05D002734 ORTHO05D003035 1.0e-09 66.6 32 84.4
QL03p072340 Quercus lobata HOM05D002734 ORTHO05D003035 1.0e-09 66.6 32 84.4
PSO017G0004 Papaver somniferum HOM05D002734 ORTHO05D003035 1.3e-09 66.2 44 68.2
TAR371G0205 Trochodendron aralioides HOM05D002734 ORTHO05D003035 1.7e-09 65.9 32 84.4
ECA233G2116 Erigeron canadensis HOM05D002734 ORTHO05D003035 3.0e-09 65.1 83 45.8
QL03p071987 Quercus lobata HOM05D002734 ORTHO05D003035 3.0e-09 65.1 32 81.2
GSVIVG01012213001 Vitis vinifera HOM05D002734 ORTHO05D003035 3.0e-09 65.1 32 81.2
Ciclev10031818m.g Citrus clementina HOM05D002734 ORTHO05D003035 3.9e-09 64.7 32 78.1
Lsat_1_v5_gn_3_105761 Lactuca sativa HOM05D002734 ORTHO05D003035 1.1e-08 63.2 39 69.2
PSO017G4100 Papaver somniferum HOM05D002734 ORTHO05D003035 1.1e-08 63.2 44 65.9
PSO017G6994 Papaver somniferum HOM05D002734 ORTHO05D003035 1.1e-08 63.2 44 65.9
PSO478G0967 Papaver somniferum HOM05D002734 ORTHO05D003035 1.1e-08 63.2 44 65.9
Eucgr.B03156 Eucalyptus grandis HOM05D002734 ORTHO05D003035 1.5e-08 62.8 62 46.8
Manes.01G028200 Manihot esculenta HOM05D002734 ORTHO05D003035 1.5e-08 62.8 32 75.0
Prupe.1G286400 Prunus persica HOM05D002734 ORTHO05D003035 1.5e-08 62.8 32 75.0
CiPaw.05G125700 Carya illinoinensis HOM05D002734 ORTHO05D003035 1.9e-08 62.4 32 78.1
COL.COLO4_27892 Corchorus olitorius HOM05D002734 ORTHO05D003035 1.9e-08 62.4 32 78.1
Duzib251G0235 Durio zibethinus HOM05D002734 ORTHO05D003035 1.9e-08 62.4 32 78.1
Thecc.02G331900 Theobroma cacao HOM05D002734 ORTHO05D003035 1.9e-08 62.4 32 78.1
TAR629G0108 Trochodendron aralioides HOM05D002734 ORTHO05D003035 1.9e-08 62.4 32 78.1
TAR629G3004 Trochodendron aralioides HOM05D002734 ORTHO05D003035 1.9e-08 62.4 32 78.1
Aqoxy3G00504 Aquilegia oxysepala HOM05D002734 ORTHO05D003035 2.5e-08 62.0 31 80.6
Dinv34073 Davidia involucrata HOM05D002734 ORTHO05D003035 2.5e-08 62.0 60 50.0
Lsat_1_v5_gn_3_56380 Lactuca sativa HOM05D002734 ORTHO05D003035 2.5e-08 62.0 37 70.3
Nn3g17436 Nelumbo nucifera HOM05D002734 ORTHO05D003035 2.5e-08 62.0 49 57.1
Oeu022232.1 Olea europaea HOM05D002734 ORTHO05D003035 2.5e-08 62.0 48 58.3
PGSC0003DMG401028319 Solanum tuberosum HOM05D002734 ORTHO05D003035 2.5e-08 62.0 60 51.7
SGA_v2.0_scaffold63G21629 Striga asiatica HOM05D002734 ORTHO05D003035 2.5e-08 62.0 32 78.1
TWI31G1102 Tripterygium wilfordii HOM05D002734 ORTHO05D003035 2.5e-08 62.0 32 78.1
Migut.E00047 Erythranthe guttata HOM05D002734 ORTHO05D003035 3.3e-08 61.6 32 78.1
Gohir.D12G164700 Gossypium hirsutum HOM05D002734 ORTHO05D003035 3.3e-08 61.6 37 67.6
Gorai.008G177500 Gossypium raimondii HOM05D002734 ORTHO05D003035 3.3e-08 61.6 37 67.6
TWI34G1877 Tripterygium wilfordii HOM05D002734 ORTHO05D003035 4.3e-08 61.2 49 57.1
arahy.Tifrunner.gnm1.ann1.CVB38J Arachis hypogaea HOM05D002734 ORTHO05D003035 5.6e-08 60.8 32 75.0
arahy.Tifrunner.gnm1.ann1.T9Q985 Arachis hypogaea HOM05D002734 ORTHO05D003035 5.6e-08 60.8 32 75.0
CAN.G616.38 Capsicum annuum HOM05D002734 ORTHO05D003035 5.6e-08 60.8 60 50.0
Cfa008884 Carpinus fangiana HOM05D002734 ORTHO05D003035 5.6e-08 60.8 47 59.6
Haze_11914 Corylus avellana HOM05D002734 ORTHO05D003035 5.6e-08 60.8 34 73.5
Gohir.A12G161400 Gossypium hirsutum HOM05D002734 ORTHO05D003035 5.6e-08 60.8 32 75.0
MD13G1063200 Malus domestica HOM05D002734 ORTHO05D003035 5.6e-08 60.8 32 71.9
Nitab4.5_0004171g0010 Nicotiana tabacum HOM05D002734 ORTHO05D003035 5.6e-08 60.8 55 52.7
PGR102G0210 Punica granatum HOM05D002734 ORTHO05D003035 7.3e-08 60.5 32 75.0
Hma1.2p1_0364F.1_g136670 Hydrangea macrophylla HOM05D002734 ORTHO05D003035 9.6e-08 60.1 53 50.9
Hma1.2p1_1826F.1_g304430 Hydrangea macrophylla HOM05D002734 ORTHO05D003035 9.6e-08 60.1 53 50.9
Hma1.2p1_1826F.1_g304436 Hydrangea macrophylla HOM05D002734 ORTHO05D003035 9.6e-08 60.1 53 50.9
QL02p067695 Quercus lobata HOM05D002734 ORTHO05D003035 9.6e-08 60.1 37 70.3
Solyc05g012350.4 Solanum lycopersicum HOM05D002734 ORTHO05D003035 9.6e-08 60.1 60 50.0
Sopen05g007180 Solanum pennellii HOM05D002734 ORTHO05D003035 9.6e-08 60.1 60 50.0
CAN.G616.37 Capsicum annuum HOM05D002734 ORTHO05D003035 1.2e-07 59.7 60 50.0
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 1.2e-07 59.7 50 58.0
FvH4_4g30130 Fragaria vesca HOM05D002734 ORTHO05D003035 1.2e-07 59.7 32 71.9
FAN07G0002 Fragaria x ananassa HOM05D002734 ORTHO05D003035 1.2e-07 59.7 32 71.9
FAN12G0360 Fragaria x ananassa HOM05D002734 ORTHO05D003035 1.2e-07 59.7 32 71.9
FAN17G1405 Fragaria x ananassa HOM05D002734 ORTHO05D003035 1.2e-07 59.7 32 71.9
Nitab4.5_0000231g0370 Nicotiana tabacum HOM05D002734 ORTHO05D003035 1.2e-07 59.7 60 51.7
Solyc05g012360.3 Solanum lycopersicum HOM05D002734 ORTHO05D003035 1.2e-07 59.7 55 52.7
Aa31LG1G1140 Aethionema arabicum HOM05D002734 ORTHO05D003035 1.6e-07 59.3 37 64.9
ATR0064G049 Amborella trichopoda HOM05D002734 ORTHO05D003035 1.6e-07 59.3 67 46.3
Lj6A779T69 Lonicera japonica HOM05D002734 ORTHO05D003035 1.6e-07 59.3 32 75.0
Oeu017533.3 Olea europaea HOM05D002734 ORTHO05D003035 1.6e-07 59.3 55 49.1
Atru.chr11.1632 Acer truncatum HOM05D002734 ORTHO05D003035 2.1e-07 58.9 32 71.9
Phvul.002G102200 Phaseolus vulgaris HOM05D002734 ORTHO05D003035 2.1e-07 58.9 46 60.9
Sabra10G0120600 Salix brachista HOM05D002734 ORTHO05D003035 2.1e-07 58.9 32 71.9
VMungo0251G3207 Vigna mungo HOM05D002734 ORTHO05D003035 2.1e-07 58.9 32 71.9
Aqoxy3G03629 Aquilegia oxysepala HOM05D002734 ORTHO05D003035 2.8e-07 58.5 32 71.9
Cc07_g04180 Coffea canephora HOM05D002734 ORTHO05D003035 2.8e-07 58.5 42 59.5
Hma1.2p1_0481F.1_g162120 Hydrangea macrophylla HOM05D002734 ORTHO05D003035 2.8e-07 58.5 37 64.9
Nn4g23418 Nelumbo nucifera HOM05D002734 ORTHO05D003035 2.8e-07 58.5 32 75.0
Rhsim10G0042700 Rhododendron simsii HOM05D002734 ORTHO05D003035 2.8e-07 58.5 37 64.9
Zm00001eb108550 Zea mays HOM05D002734 ORTHO05D003035 2.8e-07 58.5 37 67.6
Cpa.g.sc1.120 Carica papaya HOM05D002734 ORTHO05D003035 3.6e-07 58.2 33 69.7
Glyma.20G025700 Glycine max HOM05D002734 ORTHO05D003035 3.6e-07 58.2 32 71.9
Lalb_Chr05g0219961 Lupinus albus HOM05D002734 ORTHO05D003035 3.6e-07 58.2 37 64.9
MBI16_g05777_MAGBIO Magnolia biondii HOM05D002734 ORTHO05D003035 3.6e-07 58.2 32 71.9
Peaxi162Scf00175g00016 Petunia axillaris HOM05D002734 ORTHO05D003035 3.6e-07 58.2 55 50.9
MSTRG.3355 Avicennia marina HOM05D002734 ORTHO05D003035 4.7e-07 57.8 52 51.9
Potri.004G120000 Populus trichocarpa HOM05D002734 ORTHO05D003035 4.7e-07 57.8 37 64.9
Potri.010G158800 Populus trichocarpa HOM05D002734 ORTHO05D003035 4.7e-07 57.8 32 68.8
Potri.017G093500 Populus trichocarpa HOM05D002734 ORTHO05D003035 4.7e-07 57.8 37 64.9
SalBow1G8358 Salvia bowleyana HOM05D002734 ORTHO05D003035 4.7e-07 57.8 37 64.9
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 4.7e-07 57.8 50 54.0
HPP92_023633 Vanilla planifolia HOM05D002734 ORTHO05D003035 4.7e-07 57.8 37 62.2
MSTRG.2312 Avicennia marina HOM05D002734 ORTHO05D003035 6.2e-07 57.4 32 68.8
FAN02G3808 Fragaria x ananassa HOM05D002734 ORTHO05D003035 6.2e-07 57.4 37 67.6
RcHm_v2.0_Chr4g0438471 Rosa chinensis HOM05D002734 ORTHO05D003035 6.2e-07 57.4 32 68.8
TPR.G26448 Trifolium pratense HOM05D002734 ORTHO05D003035 6.2e-07 57.4 32 71.9
Cfa007660 Carpinus fangiana HOM05D002734 ORTHO05D003035 8.1e-07 57.0 37 64.9
Cc11_g12060 Coffea canephora HOM05D002734 ORTHO05D003035 8.1e-07 57.0 52 53.8
FvH4_6g46920 Fragaria vesca HOM05D002734 ORTHO05D003035 8.1e-07 57.0 37 67.6
FAN05G1893 Fragaria x ananassa HOM05D002734 ORTHO05D003035 8.1e-07 57.0 37 67.6
FAN14G0350 Fragaria x ananassa HOM05D002734 ORTHO05D003035 8.1e-07 57.0 37 67.6
RcHm_v2.0_Chr2g0165891 Rosa chinensis HOM05D002734 ORTHO05D003035 8.1e-07 57.0 37 67.6
Hund30463 Selenicereus undatus HOM05D002734 ORTHO05D003035 8.1e-07 57.0 37 62.2
AL1G25620 Arabidopsis lyrata HOM05D002734 ORTHO05D003035 1.1e-06 56.6 32 68.8
AT1G13820 Arabidopsis thaliana HOM05D002734 ORTHO05D003035 1.1e-06 56.6 32 68.8
CSS0005163 Camellia sinensis var. sinensis HOM05D002734 ORTHO05D003035 1.1e-06 56.6 31 74.2
CSS0022215 Camellia sinensis var. sinensis HOM05D002734 ORTHO05D003035 1.1e-06 56.6 37 62.2
CANSAT64G1552 Cannabis sativa HOM05D002734 ORTHO05D003035 1.1e-06 56.6 32 71.9
CiPaw.03G088900 Carya illinoinensis HOM05D002734 ORTHO05D003035 1.1e-06 56.6 37 62.2
Cc00_g13210 Coffea canephora HOM05D002734 ORTHO05D003035 1.1e-06 56.6 32 68.8
Cc11_g03940 Coffea canephora HOM05D002734 ORTHO05D003035 1.1e-06 56.6 32 68.8
Duzib187G0034 Durio zibethinus HOM05D002734 ORTHO05D003035 1.1e-06 56.6 37 62.2
Thhalv10028024m.g Eutrema salsugineum HOM05D002734 ORTHO05D003035 1.1e-06 56.6 32 68.8
MD09G1066200 Malus domestica HOM05D002734 ORTHO05D003035 1.1e-06 56.6 32 71.9
QL02p067683 Quercus lobata HOM05D002734 ORTHO05D003035 1.1e-06 56.6 63 46.0
THA.LOC104824060 Tarenaya hassleriana HOM05D002734 ORTHO05D003035 1.1e-06 56.6 32 68.8
Carub.0001s1354 Capsella rubella HOM05D002734 ORTHO05D003035 1.4e-06 56.2 32 65.6
Cpa.g.sc14.170 Carica papaya HOM05D002734 ORTHO05D003035 1.4e-06 56.2 32 68.8
Duzib264G0486 Durio zibethinus HOM05D002734 ORTHO05D003035 1.4e-06 56.2 55 47.3
Lalb_Chr10g0098801 Lupinus albus HOM05D002734 ORTHO05D003035 1.4e-06 56.2 29 79.3
MD17G1058900 Malus domestica HOM05D002734 ORTHO05D003035 1.4e-06 56.2 32 71.9
MD17G1059200 Malus domestica HOM05D002734 ORTHO05D003035 1.4e-06 56.2 32 71.9
MD17G1059300 Malus domestica HOM05D002734 ORTHO05D003035 1.4e-06 56.2 32 71.9
Prupe.3G255300 Prunus persica HOM05D002734 ORTHO05D003035 1.4e-06 56.2 37 64.9
Thecc.04G095100 Theobroma cacao HOM05D002734 ORTHO05D003035 1.4e-06 56.2 62 41.9
EL10Ac6g14979 Beta vulgaris HOM05D002734 ORTHO05D003035 1.8e-06 55.8 41 53.7
CARHR014210 Cardamine hirsuta HOM05D002734 ORTHO05D003035 1.8e-06 55.8 32 68.8
Ca_04962_v3 Cicer arietinum L. HOM05D002734 ORTHO05D003035 1.8e-06 55.8 32 68.8
ClCG07G016380 Citrullus lanatus HOM05D002734 ORTHO05D003035 1.8e-06 55.8 37 64.9
ClCG08G010370 Citrullus lanatus HOM05D002734 ORTHO05D003035 1.8e-06 55.8 32 65.6
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 1.8e-06 55.8 32 68.8
MELO3C011424.2 Cucumis melo HOM05D002734 ORTHO05D003035 1.8e-06 55.8 32 65.6
MELO3C022620.2 Cucumis melo HOM05D002734 ORTHO05D003035 1.8e-06 55.8 37 64.9
CsaV3_4G009200 Cucumis sativus L. HOM05D002734 ORTHO05D003035 1.8e-06 55.8 37 64.9
CsaV3_6G033640 Cucumis sativus L. HOM05D002734 ORTHO05D003035 1.8e-06 55.8 32 65.6
Duzib147G1402 Durio zibethinus HOM05D002734 ORTHO05D003035 1.8e-06 55.8 32 68.8
ECA246G4444 Erigeron canadensis HOM05D002734 ORTHO05D003035 1.8e-06 55.8 37 62.2
Migut.K01276 Erythranthe guttata HOM05D002734 ORTHO05D003035 1.8e-06 55.8 53 52.8
FAN05G5830 Fragaria x ananassa HOM05D002734 ORTHO05D003035 1.8e-06 55.8 37 64.9
FAN09G2778 Fragaria x ananassa HOM05D002734 ORTHO05D003035 1.8e-06 55.8 37 64.9
Lsat_1_v5_gn_8_48041 Lactuca sativa HOM05D002734 ORTHO05D003035 1.8e-06 55.8 36 63.9
CAN.G616.36 Capsicum annuum HOM05D002734 ORTHO05D003035 2.4e-06 55.5 55 49.1
Ca_18801_v3 Cicer arietinum L. HOM05D002734 ORTHO05D003035 2.4e-06 55.5 32 68.8
Lj2g0021856 Lotus japonicus HOM05D002734 ORTHO05D003035 2.4e-06 55.5 32 68.8
Psat7g133640 Pisum sativum HOM05D002734 ORTHO05D003035 2.4e-06 55.5 32 68.8
Ah.03g138940 Amaranthus hybridus HOM05D002734 ORTHO05D003035 3.1e-06 55.1 37 62.2
Rhsim12G0136000 Rhododendron simsii HOM05D002734 ORTHO05D003035 3.1e-06 55.1 37 62.2
Sed0019194 Sechium edule HOM05D002734 ORTHO05D003035 3.1e-06 55.1 37 64.9
Sed0019250 Sechium edule HOM05D002734 ORTHO05D003035 3.1e-06 55.1 32 65.6
Actinidia32303 Actinidia chinensis HOM05D002734 ORTHO05D003035 4.0e-06 54.7 55 47.3
BcaB02g06479 Brassica carinata HOM05D002734 ORTHO05D003035 4.0e-06 54.7 32 65.6
BcaC05g25287 Brassica carinata HOM05D002734 ORTHO05D003035 4.0e-06 54.7 32 65.6
A06p09900 Brassica napus HOM05D002734 ORTHO05D003035 4.0e-06 54.7 32 65.6
C05p11660 Brassica napus HOM05D002734 ORTHO05D003035 4.0e-06 54.7 32 65.6
BolC5t29913H Brassica oleracea HOM05D002734 ORTHO05D003035 4.0e-06 54.7 32 65.6
BraA06t24178Z Brassica rapa HOM05D002734 ORTHO05D003035 4.0e-06 54.7 32 65.6
Thhalv10008133m.g Eutrema salsugineum HOM05D002734 ORTHO05D003035 4.0e-06 54.7 32 65.6
SMO364G0611 Selaginella moellendorffii HOM05D002734 ORTHO05D003035 4.0e-06 54.7 32 75.0
Solyc05g012370.3 Solanum lycopersicum HOM05D002734 ORTHO05D003035 4.0e-06 54.7 55 47.3
Sopen05g007190 Solanum pennellii HOM05D002734 ORTHO05D003035 4.0e-06 54.7 55 47.3
PGSC0003DMG402028319 Solanum tuberosum HOM05D002734 ORTHO05D003035 4.0e-06 54.7 55 47.3
vmacro05631 Vaccinium macrocarpon HOM05D002734 ORTHO05D003035 4.0e-06 54.7 32 65.6
Ah.02g126890 Amaranthus hybridus HOM05D002734 ORTHO05D003035 5.2e-06 54.3 31 61.3
EL10Ac6g14992 Beta vulgaris HOM05D002734 ORTHO05D003035 5.2e-06 54.3 32 68.8
Gohir.D09G008900 Gossypium hirsutum HOM05D002734 ORTHO05D003035 5.2e-06 54.3 32 65.6
Gorai.006G010600 Gossypium raimondii HOM05D002734 ORTHO05D003035 5.2e-06 54.3 32 65.6
Manes.01G095700 Manihot esculenta HOM05D002734 ORTHO05D003035 5.2e-06 54.3 37 59.5
PGR004G0676 Punica granatum HOM05D002734 ORTHO05D003035 5.2e-06 54.3 32 68.8
Sabra04G0069300 Salix brachista HOM05D002734 ORTHO05D003035 5.2e-06 54.3 35 60.0
Sp1g12120 Schrenkiella parvula HOM05D002734 ORTHO05D003035 5.2e-06 54.3 32 65.6
VMungo1215G1809 Vigna mungo HOM05D002734 ORTHO05D003035 5.2e-06 54.3 29 75.9
AUR62003107 Chenopodium quinoa HOM05D002734 ORTHO05D003035 6.9e-06 53.9 32 68.8
AUR62007922 Chenopodium quinoa HOM05D002734 ORTHO05D003035 6.9e-06 53.9 32 68.8
Eucgr.L02857 Eucalyptus grandis HOM05D002734 ORTHO05D003035 6.9e-06 53.9 34 64.7
Gohir.A09G009800 Gossypium hirsutum HOM05D002734 ORTHO05D003035 6.9e-06 53.9 32 65.6
HanXRQChr15g0477071 Helianthus annuus HOM05D002734 ORTHO05D003035 6.9e-06 53.9 37 59.5
Lalb_Chr04g0255671 Lupinus albus HOM05D002734 ORTHO05D003035 6.9e-06 53.9 29 75.9
arahy.Tifrunner.gnm1.ann1.S065VF Arachis hypogaea HOM05D002734 ORTHO05D003035 9.0e-06 53.5 32 65.6
arahy.Tifrunner.gnm1.ann1.T9WNSP Arachis hypogaea HOM05D002734 ORTHO05D003035 9.0e-06 53.5 32 65.6
HanXRQChr12g0375281 Helianthus annuus HOM05D002734 ORTHO05D003035 9.0e-06 53.5 37 62.2
Medtr4g083080 Medicago truncatula HOM05D002734 ORTHO05D003035 9.0e-06 53.5 32 65.6
vmacro16383 Vaccinium macrocarpon HOM05D002734 ORTHO05D003035 9.0e-06 53.5 31 71.0


User provided reference genes

Program Settings