Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-197 691.8 362 100.0
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-192 675.6 362 97.5
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.9e-190 669.1 362 96.4
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-188 662.1 362 95.6
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 4.5e-187 657.9 361 93.9
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 6.7e-183 644.0 387 87.9
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-181 638.3 362 93.6
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-172 608.6 364 87.6
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 8.8e-167 590.5 334 88.6
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 4.2e-161 571.6 362 81.8
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 5.5e-161 571.2 357 82.6
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 9.4e-161 570.5 363 85.4
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 2.3e-159 565.8 355 81.1
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 6.7e-159 564.3 355 80.3
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 3.7e-157 558.5 365 79.5
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.1e-156 555.4 358 79.3
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 3.1e-156 555.4 358 79.6
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 4.1e-156 555.1 332 84.0
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 5.3e-156 554.7 336 83.3
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 9.1e-156 553.9 332 84.3
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.2e-155 553.5 367 80.7
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.0e-155 552.7 339 82.0
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 3.5e-155 552.0 337 83.1
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 3.5e-155 552.0 337 86.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 5.9e-155 551.2 357 79.3
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.7e-154 549.7 363 80.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.8e-154 548.5 325 84.6
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 3.8e-154 548.5 348 80.2
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.5e-153 546.6 357 77.9
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.2e-152 543.5 324 85.2
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.6e-152 543.1 354 79.1
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 2.1e-152 542.7 353 79.9
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 3.6e-152 542.0 329 81.8
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 4.7e-152 541.6 328 81.7
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.4e-151 540.0 342 78.7
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.4e-151 540.0 329 80.9
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 5.2e-151 538.1 357 77.0
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.2e-150 537.0 319 84.0
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.3e-150 535.4 335 80.6
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 5.7e-150 534.6 332 79.8
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.3e-149 533.5 353 77.1
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.3e-149 533.5 352 77.6
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.7e-149 533.1 359 75.5
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.2e-149 532.7 357 77.0
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.2e-149 532.7 353 76.8
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 3.7e-149 531.9 360 76.4
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 3.7e-149 531.9 387 72.6
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.8e-149 531.6 334 79.3
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.8e-149 531.6 334 79.3
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.1e-148 530.4 353 76.2
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 2.4e-148 529.3 356 77.2
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 3.1e-148 528.9 353 76.5
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 3.1e-148 528.9 353 76.5
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 5.3e-148 528.1 339 79.1
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 7.0e-148 527.7 360 75.6
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 7.0e-148 527.7 360 75.6
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 7.0e-148 527.7 360 75.6
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.0e-148 527.7 357 75.9
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.2e-147 526.9 356 75.3
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.2e-147 526.9 339 79.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 1.2e-147 526.9 348 77.3
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 2.0e-147 526.2 357 76.2
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 2.0e-147 526.2 362 76.0
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 2.0e-147 526.2 357 76.2
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 2.0e-147 526.2 357 76.2
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.0e-147 526.2 354 75.1
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.0e-147 526.2 354 75.1
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 2.7e-147 525.8 362 76.0
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 3.5e-147 525.4 321 83.2
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 5.9e-147 524.6 291 89.7
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 7.7e-147 524.2 312 82.7
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 7.7e-147 524.2 334 79.3
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.3e-146 523.5 351 75.8
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.5e-145 519.2 329 78.7
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 5.5e-145 518.1 323 80.5
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 5.5e-145 518.1 339 77.0
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.2e-144 516.9 344 76.5
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 4.7e-144 515.0 320 79.7
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.8e-143 513.1 330 78.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 5.2e-143 511.5 350 74.6
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.5e-142 510.0 354 72.9
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.5e-142 510.0 335 75.2
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.5e-142 510.0 328 77.7
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.0e-142 509.6 349 73.1
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 9.8e-142 507.3 348 73.0
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 4.8e-141 505.0 348 72.7
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.8e-140 503.1 360 72.2
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 3.1e-140 502.3 318 77.7
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.7e-139 499.2 308 79.9
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 4.5e-139 498.4 328 76.2
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.1e-137 493.8 350 72.3
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 4.2e-137 491.9 304 78.0
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.2e-136 490.3 358 71.5
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.6e-136 490.0 348 74.4
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 4.7e-136 488.4 306 79.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 6.1e-136 488.0 307 80.5
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 6.1e-136 488.0 329 75.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 5.2e-135 485.0 339 72.9
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.4e-134 482.3 304 80.3
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.3e-133 480.3 309 77.3
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 2.4e-132 476.1 376 69.4
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 5.0e-130 468.4 314 74.8
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.5e-129 466.8 313 73.5
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 9.5e-129 464.2 328 70.1
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.2e-128 463.8 300 74.7
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.7e-128 461.8 350 67.4
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 6.1e-128 461.5 326 70.6
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.5e-126 456.8 296 77.7
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.4e-126 455.7 360 69.2
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 7.5e-126 454.5 324 71.3
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.2e-125 453.0 301 77.7
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 4.9e-125 451.8 315 69.2
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 4.1e-124 448.7 318 74.2
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 9.2e-124 447.6 268 84.3
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 9.2e-124 447.6 373 64.3
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 5.9e-123 444.9 321 68.8
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.3e-122 443.7 334 66.2
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 8.6e-122 441.0 359 68.8
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.1e-121 440.7 372 63.4
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 2.8e-120 436.0 325 67.1
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.2e-117 426.4 353 63.5
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.2e-117 426.4 353 63.5
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.6e-110 402.9 242 82.2
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 4.4e-110 402.1 330 64.8
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.9e-108 396.7 241 79.7
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 3.2e-108 396.0 311 68.5
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 4.6e-107 392.1 292 68.8
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.0e-106 391.0 314 64.0
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 3.9e-106 389.0 235 83.0
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 5.6e-105 385.2 331 64.0
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.1e-92 344.4 199 82.4
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.3e-89 332.8 227 73.1
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.1e-88 330.1 220 71.8
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.6e-88 329.3 352 52.8
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.9e-84 317.0 234 70.5
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 9.9e-78 294.7 197 76.1
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.9e-74 282.7 262 61.8
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 4.2e-68 262.7 185 75.7
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 9.0e-63 245.0 147 77.6
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.6e-62 241.9 167 76.6
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 8.0e-43 178.7 142 72.5
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.7e-40 169.9 117 68.4
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.8e-40 169.5 129 64.3
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.3e-39 166.0 121 66.9
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 3.8e-37 159.8 117 77.8
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.5e-37 158.7 120 64.2
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.3e-32 144.8 82 81.7
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 5.3e-31 139.4 124 62.1
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.7e-29 134.4 97 70.1
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.5e-28 130.6 118 65.3
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 4.2e-28 129.8 257 32.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.6e-25 120.6 88 72.7
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.1e-23 112.1 86 61.6
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 2.3e-21 107.5 79 78.5
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 5.5e-20 102.8 73 82.2
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 8.9e-18 95.5 74 60.8
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.4e-17 93.2 59 66.1
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.9e-16 89.7 53 69.8
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 3.1e-15 87.0 52 71.2


User provided reference genes

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