Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 7.4e-198 693.7 362 100.0
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 2.7e-192 675.2 362 97.2
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 2.7e-192 675.2 362 97.5
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-191 672.2 362 97.0
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-185 651.7 387 88.9
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 4.6e-184 647.9 361 92.5
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 8.7e-183 643.7 362 94.2
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 5.1e-175 617.8 364 88.7
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 8.5e-170 600.5 335 89.9
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 9.1e-164 580.5 357 84.0
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 2.0e-163 579.3 362 82.9
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-162 576.6 363 86.2
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 6.5e-162 574.3 355 82.5
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 7.9e-160 567.4 355 80.6
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 3.3e-158 562.0 332 84.9
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 4.4e-158 561.6 365 79.7
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 5.7e-158 561.2 362 78.7
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.3e-157 560.1 367 81.5
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 1.3e-157 560.1 329 86.0
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 2.2e-157 559.3 332 85.2
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 2.2e-157 559.3 357 79.6
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.8e-157 558.9 336 83.9
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 3.7e-157 558.5 357 80.4
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.4e-156 556.6 331 84.6
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.4e-156 555.8 342 82.7
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 4.1e-156 555.1 347 81.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 7.0e-156 554.3 363 81.0
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 9.1e-156 553.9 337 86.6
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.3e-154 550.1 329 82.7
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.7e-154 549.7 357 79.0
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.7e-154 549.7 324 85.8
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 3.8e-154 548.5 335 80.9
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 6.5e-154 547.7 329 82.7
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 6.5e-154 547.7 342 79.8
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 8.5e-154 547.4 357 79.0
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 3.2e-153 545.4 353 80.2
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.2e-152 543.5 319 85.0
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 4.7e-152 541.6 338 80.8
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-151 540.0 335 80.3
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-151 540.0 335 80.3
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.8e-151 539.7 359 76.3
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 5.2e-151 538.1 338 80.5
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 5.2e-151 538.1 332 80.1
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.0e-150 536.2 357 77.6
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.0e-150 536.2 348 78.2
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 2.6e-150 535.8 352 78.1
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 3.3e-150 535.4 387 73.1
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.7e-150 534.6 354 76.3
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.7e-150 534.6 354 76.3
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.8e-149 532.3 320 82.5
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 3.7e-149 531.9 353 77.1
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 3.7e-149 531.9 360 76.4
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.7e-149 531.9 357 77.0
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.8e-149 531.6 321 84.1
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 6.3e-149 531.2 356 75.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 8.2e-149 530.8 351 76.6
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.1e-148 530.4 339 79.4
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.1e-148 530.4 291 90.4
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.1e-148 530.4 339 79.6
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 4.1e-148 528.5 363 76.6
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 7.0e-148 527.7 353 76.5
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 7.0e-148 527.7 330 79.7
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 9.1e-148 527.3 353 76.5
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.6e-147 526.6 360 75.6
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.6e-147 526.6 360 75.6
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.6e-147 526.6 360 75.6
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 2.0e-147 526.2 357 76.2
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 2.0e-147 526.2 357 76.2
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 2.0e-147 526.2 357 76.2
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 3.5e-147 525.4 356 75.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 4.5e-147 525.0 365 75.1
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 4.5e-147 525.0 326 80.7
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 5.9e-147 524.6 365 75.1
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 5.9e-147 524.6 339 77.9
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.7e-147 524.2 357 75.6
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.3e-146 523.5 329 79.6
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 2.9e-146 522.3 320 80.6
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 3.8e-146 521.9 362 75.4
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.5e-145 519.2 349 73.9
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 3.2e-145 518.8 347 76.1
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 4.2e-145 518.5 334 77.5
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.1e-144 516.2 335 78.5
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 2.7e-144 515.8 354 73.4
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 1.0e-143 513.8 348 74.1
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.4e-143 513.5 335 75.5
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 5.2e-143 511.5 348 73.9
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.4e-142 508.8 360 73.1
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 9.8e-142 507.3 323 77.4
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 6.3e-141 504.6 328 77.1
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 5.4e-140 501.5 325 76.9
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 2.7e-139 499.2 365 71.2
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.5e-139 498.4 360 71.9
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.7e-138 496.5 304 78.6
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.8e-138 495.4 310 80.6
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.1e-137 493.8 306 79.7
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.5e-137 493.4 347 74.4
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.9e-137 493.0 352 71.0
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 7.2e-137 491.1 360 71.1
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.1e-136 489.6 307 80.5
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 8.8e-135 484.2 309 77.7
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 9.8e-134 480.7 376 70.2
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.5e-131 471.9 313 74.1
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 5.0e-130 468.4 300 75.3
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.6e-130 468.0 350 68.3
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.9e-129 466.5 314 74.5
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 2.5e-129 466.1 296 79.1
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.5e-129 466.1 330 70.6
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 5.6e-129 464.9 323 71.2
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.8e-127 459.9 311 74.6
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.0e-127 459.1 359 69.1
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.0e-126 456.4 315 69.8
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.6e-126 456.1 301 78.4
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 4.4e-126 455.3 317 74.4
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 4.4e-126 455.3 340 69.4
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.2e-124 449.1 321 69.5
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.2e-124 449.1 318 69.5
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 9.2e-124 447.6 276 82.2
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 2.0e-123 446.4 372 64.2
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.0e-122 444.1 359 69.1
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 4.3e-121 438.7 325 67.4
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.2e-115 420.6 353 62.9
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.2e-115 420.6 353 62.9
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.2e-112 410.6 242 83.9
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.6e-112 410.2 349 63.6
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.2e-110 404.1 244 79.9
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 3.7e-109 399.1 292 70.9
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 8.3e-109 397.9 311 68.2
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 3.2e-108 396.0 319 63.9
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 3.0e-106 389.4 331 64.7
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 5.1e-106 388.7 235 83.0
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.5e-94 350.5 228 75.9
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.6e-91 339.0 227 74.4
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 5.1e-90 335.5 219 72.6
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 5.6e-89 332.0 352 53.1
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-84 317.4 233 71.2
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.4e-78 296.2 197 76.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.1e-74 282.3 262 61.8
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 1.4e-68 264.2 185 76.2
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.7e-64 249.6 147 78.9
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.6e-62 241.9 167 76.6
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-43 180.6 142 72.5
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.1e-41 174.9 125 67.2
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 6.3e-40 169.1 129 64.3
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.0e-39 165.6 121 66.9
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 3.8e-37 159.8 117 77.8
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.1e-36 158.3 120 64.2
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.0e-34 150.2 82 84.1
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 7.0e-31 139.0 124 62.1
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.7e-29 134.4 97 70.1
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.8e-29 133.3 257 33.1
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.5e-28 130.6 118 65.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.6e-25 120.6 88 72.7
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.1e-23 112.1 86 61.6
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 2.3e-21 107.5 79 78.5
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 5.5e-20 102.8 73 82.2
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 3.6e-19 100.1 74 63.5
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 6.8e-18 95.9 77 59.7
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.5e-17 94.7 53 73.6
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 4.1e-15 86.7 52 71.2


User provided reference genes

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