Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 6.7e-185 650.6 338 100.0
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 3.9e-161 571.6 337 88.7
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-159 565.1 337 86.9
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 2.6e-157 558.9 337 84.9
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 4.5e-157 558.1 337 86.1
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-156 557.0 337 86.6
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.9e-156 555.4 363 80.7
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 3.8e-156 555.1 337 86.4
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 5.7e-152 541.2 337 85.8
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 4.2e-147 525.0 342 81.6
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 3.0e-145 518.8 342 78.9
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 6.7e-145 517.7 340 79.1
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 2.0e-141 506.1 332 78.0
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 5.5e-139 498.0 342 76.3
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 9.4e-139 497.3 337 75.7
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 2.1e-138 496.1 337 75.1
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.1e-138 496.1 312 79.2
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.0e-137 493.8 340 74.7
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 2.3e-137 492.7 290 84.8
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 6.8e-137 491.1 310 80.0
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.5e-136 490.0 311 79.1
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 2.6e-136 489.2 337 78.0
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 5.7e-136 488.0 308 80.5
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 5.7e-136 488.0 309 79.9
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 5.7e-136 488.0 334 75.4
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 9.8e-136 487.3 306 81.0
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.7e-135 486.5 309 79.6
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.2e-135 486.1 310 79.0
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 2.2e-135 486.1 337 74.5
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 4.8e-135 485.0 310 79.4
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 8.3e-135 484.2 341 76.8
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 8.3e-135 484.2 338 74.9
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 2.4e-134 482.6 339 74.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 2.4e-134 482.6 311 77.8
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.6e-133 479.9 311 76.5
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.7e-133 479.2 311 79.1
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.5e-133 478.8 301 80.7
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 3.5e-133 478.8 310 76.1
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 4.5e-133 478.4 336 72.6
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 1.7e-132 476.5 309 79.3
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 3.8e-132 475.3 308 76.6
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 6.5e-132 474.6 333 73.0
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 8.5e-132 474.2 340 73.5
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.1e-131 473.8 288 81.9
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.5e-131 472.6 311 77.2
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.5e-131 472.6 311 77.2
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 2.5e-131 472.6 338 74.0
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 5.5e-131 471.5 328 74.4
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 7.2e-131 471.1 311 75.9
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 7.2e-131 471.1 342 72.2
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.1e-130 469.5 339 70.5
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.1e-130 469.5 339 70.5
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 2.7e-130 469.2 338 71.9
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 3.6e-130 468.8 341 71.8
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 3.6e-130 468.8 334 71.9
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.6e-130 468.8 338 71.3
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 2.3e-129 466.1 342 71.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.3e-129 466.1 326 75.2
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 3.0e-129 465.7 331 71.9
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-129 465.7 337 76.0
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 5.2e-129 464.9 338 73.1
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 5.2e-129 464.9 288 80.2
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.5e-128 463.4 337 72.4
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 2.6e-128 462.6 306 75.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 2.6e-128 462.6 332 70.8
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.6e-128 462.6 311 74.3
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 4.4e-128 461.8 306 75.2
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 5.7e-128 461.5 292 77.4
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 9.8e-128 460.7 338 71.6
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 9.8e-128 460.7 338 71.6
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.3e-127 460.3 323 74.9
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.3e-127 460.3 313 75.1
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-127 459.5 338 71.9
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 2.2e-127 459.5 339 71.7
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.2e-127 459.5 338 71.9
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.2e-127 459.5 338 71.9
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 2.8e-127 459.1 339 71.7
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 4.9e-127 458.4 338 69.2
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.4e-126 456.8 338 71.3
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.4e-126 456.8 299 74.9
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 7.0e-126 454.5 338 71.0
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 7.0e-126 454.5 338 71.0
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 7.0e-126 454.5 338 71.0
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 7.0e-126 454.5 338 69.5
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.2e-125 453.8 338 71.0
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 3.5e-125 452.2 338 69.2
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 3.5e-125 452.2 339 70.5
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 4.5e-125 451.8 338 69.8
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.5e-125 451.8 337 70.0
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.9e-125 451.4 338 70.7
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 7.7e-125 451.1 338 66.9
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.3e-124 450.3 290 75.9
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 2.8e-122 442.6 333 67.9
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.1e-122 441.4 337 68.8
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 8.0e-122 441.0 309 72.2
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.4e-121 440.3 280 76.1
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.4e-121 440.3 337 70.0
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 4.0e-121 438.7 336 67.6
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.3e-119 433.7 301 74.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 2.4e-118 429.5 317 69.1
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.4e-118 429.5 283 75.3
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 5.4e-118 428.3 355 67.6
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.6e-117 426.8 357 65.8
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.0e-117 426.4 363 62.8
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 3.5e-117 425.6 337 64.4
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.7e-116 423.3 311 69.8
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.0e-116 422.5 290 71.4
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.1e-115 420.6 282 72.0
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.9e-115 419.9 305 72.8
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 3.3e-115 419.1 320 69.1
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 6.2e-114 414.8 330 64.2
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 6.8e-113 411.4 337 61.4
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.7e-111 406.8 282 70.2
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 9.2e-110 401.0 288 70.1
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.3e-108 397.1 249 81.5
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.3e-108 396.4 280 68.6
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 9.5e-107 391.0 279 68.5
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.6e-106 390.2 349 61.9
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 5.2e-105 385.2 387 58.4
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 6.8e-105 384.8 238 80.3
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 3.4e-104 382.5 232 84.1
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 8.3e-103 377.9 244 75.0
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 5.1e-100 368.6 295 64.4
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.4e-96 355.9 338 57.7
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.4e-96 355.9 338 57.7
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.1e-93 346.7 295 60.3
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.1e-93 346.7 309 60.8
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.7e-92 343.6 303 62.0
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 1.5e-91 340.5 219 79.0
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 4.7e-90 335.5 311 58.8
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 3.1e-89 332.8 229 73.8
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.5e-85 319.3 231 71.0
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 4.8e-82 308.9 204 70.6
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.5e-75 287.3 312 52.2
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 7.4e-75 285.0 197 73.6
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.2e-70 269.2 214 67.8
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.5e-64 249.2 249 58.6
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.7e-59 232.3 147 73.5
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 1.0e-55 221.5 162 72.2
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.1e-53 213.8 154 74.0
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 5.5e-38 162.5 146 63.7
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 8.0e-37 158.7 126 59.5
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 9.7e-35 151.8 116 75.9
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.7e-31 141.0 82 79.3
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.0e-29 132.1 105 63.8
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-28 130.6 105 62.9
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.7e-26 123.2 230 30.9
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.4e-25 120.6 96 62.5
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.3e-23 114.8 105 64.8
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.2e-22 110.2 87 66.7
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.1e-21 105.9 73 67.1
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.6e-19 100.5 105 56.2
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 1.7e-18 97.8 103 53.4
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 8.3e-18 95.5 72 79.2
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.8e-17 94.4 78 71.8
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.0e-16 90.9 55 67.3
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.7e-16 90.5 73 61.6
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.7e-16 89.0 48 72.9
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 2.5e-14 84.0 43 79.1
QL03p071975 Quercus lobata HOM05D001391 ORTHO05D000058 9.5e-06 55.5 43 69.8


User provided reference genes

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