Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 5.0e-194 681.0 364 100.0
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-177 626.3 364 88.7
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-175 620.2 364 88.7
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-175 619.4 364 87.9
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-174 616.7 387 82.7
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 8.2e-173 610.5 364 87.6
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 8.2e-173 610.5 362 90.6
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-166 590.1 362 83.4
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 5.9e-163 577.8 366 80.9
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 9.4e-161 570.5 337 88.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 4.8e-157 558.1 362 79.0
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.4e-156 556.6 359 78.3
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.7e-154 549.7 354 77.7
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.6e-152 543.1 367 76.6
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.1e-152 542.7 326 82.5
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.1e-152 542.7 364 75.8
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-152 542.3 364 82.4
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 5.2e-151 538.1 359 76.0
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 6.8e-151 537.7 323 81.7
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 8.9e-151 537.3 367 79.0
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 2.0e-150 536.2 335 80.0
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.4e-150 535.0 323 82.0
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 4.4e-150 535.0 357 75.9
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 5.7e-150 534.6 320 81.9
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 7.5e-150 534.3 361 75.6
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 9.8e-150 533.9 330 80.9
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.3e-149 533.5 330 80.9
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 3.7e-149 531.9 366 76.8
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.7e-149 531.9 324 82.4
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 3.7e-149 531.9 325 79.7
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 6.3e-149 531.2 314 83.8
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 4.1e-148 528.5 335 79.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 7.0e-148 527.7 359 74.7
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.2e-147 526.9 321 80.7
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 7.8e-147 524.2 334 78.4
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.0e-146 523.9 328 78.0
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.0e-146 523.9 316 82.3
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.7e-146 523.1 357 73.4
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 2.9e-146 522.3 319 79.9
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.8e-146 521.9 334 78.1
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.8e-146 521.9 328 78.7
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.8e-146 521.9 328 78.7
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 8.6e-146 520.8 316 80.1
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.1e-145 520.4 356 75.6
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 3.3e-145 518.8 358 74.3
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 5.6e-145 518.1 288 88.5
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 5.6e-145 518.1 359 73.5
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 9.5e-145 517.3 355 73.2
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 9.5e-145 517.3 354 75.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.1e-144 516.2 350 75.7
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 2.8e-144 515.8 334 78.4
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.6e-144 515.4 358 73.2
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 8.0e-144 514.2 322 78.3
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 8.0e-144 514.2 389 69.9
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.4e-143 513.5 333 77.5
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 2.3e-143 512.7 363 73.6
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.3e-143 512.7 323 78.6
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 8.9e-143 510.8 359 72.7
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.5e-142 510.0 321 78.8
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.5e-142 510.0 316 81.0
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.6e-142 509.2 363 73.0
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.6e-142 509.2 363 73.0
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.6e-142 509.2 363 73.0
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.8e-142 508.1 356 71.6
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.8e-142 508.1 356 71.6
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 7.5e-142 507.7 323 76.5
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 7.5e-142 507.7 297 83.2
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.3e-141 506.9 359 73.5
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.7e-141 506.5 359 73.5
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.7e-141 506.5 333 76.0
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 4.9e-141 505.0 355 73.0
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.1e-140 503.8 365 72.1
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.9e-140 503.1 365 72.6
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 3.2e-140 502.3 358 71.5
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.2e-140 502.3 360 72.8
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 5.4e-140 501.5 355 72.1
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 5.4e-140 501.5 360 72.5
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 5.4e-140 501.5 360 72.5
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 5.4e-140 501.5 360 72.5
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 7.0e-140 501.1 355 72.1
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 7.0e-140 501.1 342 73.4
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.0e-139 499.6 330 73.0
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.7e-139 499.2 302 80.1
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.0e-138 497.3 349 71.6
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.3e-138 496.9 340 72.6
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 6.6e-138 494.6 317 75.7
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 4.3e-137 491.9 322 75.8
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 5.6e-137 491.5 349 69.9
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 7.3e-137 491.1 300 78.0
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 2.1e-136 489.6 353 69.1
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.7e-136 488.4 362 69.1
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 6.2e-136 488.0 334 73.1
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.2e-134 483.8 323 74.6
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 4.4e-134 481.9 359 68.5
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.5e-134 481.1 362 68.2
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 7.5e-134 481.1 302 79.5
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 8.3e-133 477.6 349 71.9
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 4.1e-132 475.3 299 79.3
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.2e-131 473.8 317 74.1
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 7.8e-131 471.1 309 74.4
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.1e-130 468.4 305 74.4
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 3.3e-129 465.7 380 66.8
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.2e-128 463.8 300 74.0
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 1.6e-128 463.4 351 67.2
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.6e-128 462.2 380 63.7
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 4.4e-126 455.3 297 73.4
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.2e-125 453.0 314 72.3
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 3.2e-124 449.1 300 76.3
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 4.1e-124 448.7 295 71.5
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 2.7e-123 446.0 361 67.3
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 4.6e-123 445.3 295 72.2
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.3e-122 443.7 276 81.2
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 2.3e-122 443.0 375 62.9
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.1e-121 440.7 304 72.0
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.9e-121 439.9 303 75.6
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 9.5e-121 437.6 257 85.2
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 9.5e-121 437.6 403 61.0
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.6e-120 435.6 298 70.8
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 4.0e-119 432.2 319 71.2
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 1.7e-117 426.8 294 69.7
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.4e-111 406.4 236 84.7
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 4.2e-108 395.6 319 63.0
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.4e-108 395.2 356 59.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.4e-108 395.2 356 59.6
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 2.1e-107 393.3 331 63.7
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.7e-106 390.2 257 73.9
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 5.1e-106 388.7 236 78.8
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.3e-105 386.0 323 63.8
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 5.6e-105 385.2 235 81.7
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 2.1e-104 383.3 327 62.4
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 4.2e-92 342.4 193 84.5
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.2e-88 328.6 229 71.6
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.4e-84 317.4 197 74.1
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 9.3e-84 314.7 233 69.5
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 5.7e-81 305.4 322 52.8
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.4e-79 300.8 197 77.7
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 8.2e-72 275.0 262 59.5
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 3.0e-66 256.5 185 73.0
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 7.7e-62 241.9 143 77.6
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 5.5e-60 235.7 167 73.7
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.4e-39 167.2 129 63.6
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.5e-38 163.3 121 66.1
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-36 157.1 117 76.9
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.1e-35 154.1 120 60.8
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.1e-35 154.1 120 61.7
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 6.1e-35 152.5 144 62.5
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.9e-32 142.9 82 80.5
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.5e-30 136.7 97 68.0
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 4.6e-30 136.3 124 59.7
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.2e-27 128.3 255 31.0
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 6.1e-27 125.9 118 61.0
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.2e-23 113.6 88 67.0
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-21 107.5 86 60.5
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 4.3e-20 103.2 79 75.9
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.1e-19 100.9 102 52.9
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 4.7e-19 99.8 73 80.8
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.6e-17 94.0 55 70.9
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.5e-17 92.4 48 77.1
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 9.2e-15 85.5 43 81.4


User provided reference genes

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