Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p071280 Quercus lobata HOM05D002294 ORTHO05D002367 2.4e-60 235.3 120 100.0
QL03p071250 Quercus lobata HOM05D002294 ORTHO05D002367 8.8e-39 163.7 115 79.1
Haze_11924 Corylus avellana HOM05D002294 ORTHO05D002367 3.2e-25 118.6 120 57.5
Cfa008892 Carpinus fangiana HOM05D000235 ORTHO05D000147 1.6e-24 116.3 114 59.6
Haze_17593 Corylus avellana HOM05D002294 ORTHO05D002367 2.7e-24 115.5 120 57.5
Haze_11976 Corylus avellana HOM05D002294 ORTHO05D002367 1.8e-23 112.8 119 56.3
QL10p006794 Quercus lobata HOM05D002294 ORTHO05D002367 1.5e-22 109.8 113 60.2
Cfa015569 Carpinus fangiana HOM05D002294 ORTHO05D002367 2.6e-22 109.0 120 54.2
CiPaw.06G091400 Carya illinoinensis HOM05D002294 ORTHO05D002367 1.6e-19 99.8 113 54.0
RcHm_v2.0_Chr7g0192461 Rosa chinensis HOM05D002294 ORTHO05D002367 1.0e-18 97.1 118 51.7
Dinv11485 Davidia involucrata HOM05D002294 ORTHO05D002367 1.3e-18 96.7 115 49.6
Lj1A261T33 Lonicera japonica HOM05D002294 ORTHO05D002367 2.2e-18 95.9 85 58.8
TAR374G1207 Trochodendron aralioides HOM05D002294 ORTHO05D002367 1.1e-17 93.6 106 55.7
Dinv33811 Davidia involucrata HOM05D002294 ORTHO05D002367 3.2e-17 92.0 119 46.2
GSVIVG01007636001 Vitis vinifera HOM05D002294 ORTHO05D002367 4.2e-17 91.7 130 49.2
RcHm_v2.0_Chr7g0192431 Rosa chinensis HOM05D002294 ORTHO05D002367 2.3e-15 85.9 89 55.1
FAN08G2480 Fragaria x ananassa HOM05D002294 ORTHO05D002367 5.2e-15 84.7 95 50.5
FvH4_5g06380 Fragaria vesca HOM05D002294 ORTHO05D002367 1.2e-14 83.6 95 49.5
FAN04G2356 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.2e-14 83.6 95 50.5
FAN18G1540 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.2e-14 83.6 95 49.5
CSS0020221 Camellia sinensis var. sinensis HOM05D002294 ORTHO05D002367 1.5e-14 83.2 107 45.8
Prupe.5G164800 Prunus persica HOM05D002294 ORTHO05D002367 2.0e-14 82.8 96 54.2
Atru.chr9.2591 Acer truncatum HOM05D002294 ORTHO05D002367 3.4e-14 82.0 98 50.0
PGR083G1112 Punica granatum HOM05D002294 ORTHO05D002367 5.7e-14 81.3 113 45.1
MD06G1165200 Malus domestica HOM05D002294 ORTHO05D002367 7.5e-14 80.9 116 45.7
FAN13G0475 Fragaria x ananassa HOM05D002294 ORTHO05D002367 2.8e-13 79.0 95 49.5
CANSAT64G2646 Cannabis sativa HOM05D002294 ORTHO05D002367 6.3e-13 77.8 104 44.2
Glyma.18G078700 Glycine max HOM05D002294 ORTHO05D002367 8.3e-13 77.4 133 46.6
MD14G1170700 Malus domestica HOM05D002294 ORTHO05D002367 8.3e-13 77.4 115 44.3
Ciclev10022242m.g Citrus clementina HOM05D002294 ORTHO05D002367 9.1e-12 73.9 91 49.5
Glyma.08G265900 Glycine max HOM05D002294 ORTHO05D002367 9.1e-12 73.9 103 50.5
TWI23G0110 Tripterygium wilfordii HOM05D002294 ORTHO05D002367 9.1e-12 73.9 93 47.3
Gorai.008G201800 Gossypium raimondii HOM05D002294 ORTHO05D002367 1.2e-11 73.6 67 61.2
Aqoxy7G03961 Aquilegia oxysepala HOM05D002294 ORTHO05D002367 2.0e-11 72.8 122 41.8
Manes.14G060000 Manihot esculenta HOM05D002294 ORTHO05D002367 2.7e-11 72.4 89 52.8
Cpa.g.sc59.127 Carica papaya HOM05D002294 ORTHO05D002367 1.7e-10 69.7 124 41.1
ECA248G3964 Erigeron canadensis HOM05D002294 ORTHO05D002367 1.7e-10 69.7 101 39.6
Rhsim01G0251600 Rhododendron simsii HOM05D002294 ORTHO05D002367 2.3e-10 69.3 103 40.8
Cc04_g11410 Coffea canephora HOM05D002294 ORTHO05D002367 5.0e-10 68.2 82 51.2
Manes.06G111150 Manihot esculenta HOM05D002294 ORTHO05D002367 5.0e-10 68.2 81 50.6
Psat7g123320 Pisum sativum HOM05D002294 ORTHO05D002367 5.0e-10 68.2 110 40.9
Sed0005556 Sechium edule HOM05D002294 ORTHO05D002367 6.6e-10 67.8 104 44.2
Sc13g0003620 Simmondsia chinensis HOM05D002294 ORTHO05D002367 6.6e-10 67.8 107 45.8
Gohir.A12G185350 Gossypium hirsutum HOM05D002294 ORTHO05D002367 8.6e-10 67.4 91 47.3
Phvul.006G055700 Phaseolus vulgaris HOM05D002294 ORTHO05D002367 1.9e-09 66.2 100 45.0
Hma1.2p1_0221F.1_g093080 Hydrangea macrophylla HOM05D002294 ORTHO05D002367 4.2e-09 65.1 90 41.1
Hund17023 Selenicereus undatus HOM05D002294 ORTHO05D002367 4.2e-09 65.1 99 41.4
Thhalv10014577m.g Eutrema salsugineum HOM05D002294 ORTHO05D002367 7.2e-09 64.3 74 48.6
Medtr3g058620 Medicago truncatula HOM05D002294 ORTHO05D002367 7.2e-09 64.3 114 40.4
ClCG01G013640 Citrullus lanatus HOM05D002294 ORTHO05D002367 1.2e-08 63.5 103 42.7
Lalb_Chr25g0286841 Lupinus albus HOM05D002294 ORTHO05D002367 1.2e-08 63.5 119 41.2
PGSC0003DMG400016394 Solanum tuberosum HOM05D004490 ORTHO05D002367 1.2e-08 63.5 98 42.9
CSS0000839 Camellia sinensis var. sinensis HOM05D002294 ORTHO05D002367 1.6e-08 63.2 77 45.5
Eucgr.B00214 Eucalyptus grandis HOM05D002294 ORTHO05D002367 2.1e-08 62.8 119 37.0
Gohir.D12G188228 Gossypium hirsutum HOM05D002294 ORTHO05D002367 2.1e-08 62.8 82 46.3
Nn1g09140 Nelumbo nucifera HOM05D002294 ORTHO05D002367 2.1e-08 62.8 123 39.8
MELO3C004891.2 Cucumis melo HOM05D002294 ORTHO05D002367 3.6e-08 62.0 89 47.2
CsaV3_1G014020 Cucumis sativus L. HOM05D000724 ORTHO05D002367 3.6e-08 62.0 117 41.0
BcaC04g19197 Brassica carinata HOM05D002294 ORTHO05D002367 4.7e-08 61.6 94 40.4
BolC3t13108H Brassica oleracea HOM05D002294 ORTHO05D002367 4.7e-08 61.6 74 48.6
AUR62008066 Chenopodium quinoa HOM05D002294 ORTHO05D002367 4.7e-08 61.6 97 41.2
AUR62028643 Chenopodium quinoa HOM05D002294 ORTHO05D002367 8.0e-08 60.8 97 40.2
Duzib205G0024 Durio zibethinus HOM05D002294 ORTHO05D002367 1.0e-07 60.5 88 47.7
VMungo0540G0960 Vigna mungo HOM05D002294 ORTHO05D002367 1.0e-07 60.5 78 48.7
A03p05170 Brassica napus HOM05D002294 ORTHO05D002367 1.4e-07 60.1 74 47.3
A10p25980 Brassica napus HOM05D002294 ORTHO05D002367 1.4e-07 60.1 91 41.8
BraA03t09856Z Brassica rapa HOM05D002294 ORTHO05D002367 1.4e-07 60.1 74 47.3
HanXRQChr16g0504741 Helianthus annuus HOM05D002294 ORTHO05D002367 1.4e-07 60.1 111 38.7
Sopen01g003860 Solanum pennellii HOM05D002294 ORTHO05D002367 1.4e-07 60.1 103 40.8
Ah.05g174260 Amaranthus hybridus HOM05D002294 ORTHO05D002367 1.8e-07 59.7 101 41.6
arahy.Tifrunner.gnm1.ann1.171W8J Arachis hypogaea HOM05D002294 ORTHO05D002367 1.8e-07 59.7 102 45.1
Potri.012G086800 Populus trichocarpa HOM05D002294 ORTHO05D002367 2.3e-07 59.3 71 50.7
BcaB01g05457 Brassica carinata HOM05D002294 ORTHO05D002367 4.0e-07 58.5 74 45.9
C03p05970 Brassica napus HOM05D002294 ORTHO05D002367 4.0e-07 58.5 73 47.9
CARHR201460 Cardamine hirsuta HOM05D002294 ORTHO05D002367 4.0e-07 58.5 121 37.2
Gohir.A07G056300 Gossypium hirsutum HOM05D002294 ORTHO05D002367 4.0e-07 58.5 105 46.7
Sabra12G0062200 Salix brachista HOM05D002294 ORTHO05D002367 4.0e-07 58.5 71 49.3
ATR0057G012 Amborella trichopoda HOM05D002294 ORTHO05D002367 5.2e-07 58.2 113 38.9
MBI09_g37134_MAGBIO Magnolia biondii HOM05D002294 ORTHO05D002367 6.8e-07 57.8 84 46.4
Solyc01g008340.3 Solanum lycopersicum HOM05D002294 ORTHO05D002367 6.8e-07 57.8 101 40.6
BolC9t59334H Brassica oleracea HOM05D002294 ORTHO05D002367 8.9e-07 57.4 105 36.2
AUR62013638 Chenopodium quinoa HOM05D002294 ORTHO05D002367 8.9e-07 57.4 97 39.2
DCAR_026178 Daucus carota HOM05D002294 ORTHO05D002367 8.9e-07 57.4 72 50.0
Lj6g0017256 Lotus japonicus HOM05D002294 ORTHO05D002367 8.9e-07 57.4 80 47.5
Thecc.03G115800 Theobroma cacao HOM05D002294 ORTHO05D002367 8.9e-07 57.4 88 43.2
TPR.G30742 Trifolium pratense HOM05D002294 ORTHO05D002367 8.9e-07 57.4 116 35.3
Carub.0006s1028 Capsella rubella HOM05D002294 ORTHO05D002367 1.2e-06 57.0 74 44.6
Gohir.D07G060600 Gossypium hirsutum HOM05D002294 ORTHO05D002367 1.2e-06 57.0 105 45.7
Sp6g31850 Schrenkiella parvula HOM05D002294 ORTHO05D002367 1.2e-06 57.0 74 44.6
AUR62004210 Chenopodium quinoa HOM05D002294 ORTHO05D002367 1.5e-06 56.6 97 38.1
Gorai.001G064300 Gossypium raimondii HOM05D002294 ORTHO05D002367 1.5e-06 56.6 80 47.5
AT1G24240 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 3.4e-06 55.5 77 45.5
Nn7g38397 Nelumbo nucifera HOM05D002294 ORTHO05D002367 3.4e-06 55.5 60 56.7
Nitab4.5_0009336g0020 Nicotiana tabacum HOM05D002294 ORTHO05D002367 3.4e-06 55.5 94 40.4
Sed0010894 Sechium edule HOM05D002294 ORTHO05D002367 3.4e-06 55.5 103 38.8
THA.LOC104806036 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 3.4e-06 55.5 32 87.5
arahy.Tifrunner.gnm1.ann1.D3JFX3 Arachis hypogaea HOM05D002294 ORTHO05D002367 4.4e-06 55.1 115 38.3
C09p65060 Brassica napus HOM05D002294 ORTHO05D002367 4.4e-06 55.1 136 33.8
COL.COLO4_32207 Corchorus olitorius HOM05D002294 ORTHO05D002367 4.4e-06 55.1 89 41.6
DCAR_016450 Daucus carota HOM05D002294 ORTHO05D002367 4.4e-06 55.1 29 89.7
Nitab4.5_0000069g0090 Nicotiana tabacum HOM05D002294 ORTHO05D002367 4.4e-06 55.1 94 40.4
Rhsim12G0168300 Rhododendron simsii HOM05D002294 ORTHO05D002367 4.4e-06 55.1 36 75.0
AT4G11630 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 5.7e-06 54.7 71 45.1
EL10Ac1g00885 Beta vulgaris HOM05D002294 ORTHO05D002367 5.7e-06 54.7 71 47.9
Oeu040866.1 Olea europaea HOM05D002294 ORTHO05D002367 7.5e-06 54.3 32 81.2
vmacro16647 Vaccinium macrocarpon HOM05D002294 ORTHO05D002367 7.5e-06 54.3 29 86.2
AL6G22500 Arabidopsis lyrata HOM05D002294 ORTHO05D002367 9.8e-06 53.9 70 44.3
Peaxi162Scf00021g02521 Petunia axillaris HOM05D002294 ORTHO05D002367 9.8e-06 53.9 79 43.0


User provided reference genes

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