Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 4.4e-70 268.1 160 100.0
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 7.3e-49 197.6 162 77.2
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 3.3e-41 172.2 189 66.1
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 7.1e-36 154.5 169 64.5
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.5e-25 120.2 138 58.0
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.9e-25 119.8 124 60.5
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.1e-23 112.5 141 51.8
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 3.4e-22 109.0 143 49.7
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 4.5e-22 108.6 120 57.5
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.2e-20 102.4 126 49.2
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.2e-19 100.5 131 50.4
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.6e-19 100.1 124 53.2
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 2.7e-19 99.4 129 52.7
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 4.6e-19 98.6 131 48.9
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.3e-18 97.1 127 48.8
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.3e-18 97.1 127 48.8
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 2.3e-18 96.3 121 51.2
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 3.0e-18 95.9 172 43.6
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 3.0e-18 95.9 123 50.4
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 5.1e-18 95.1 126 48.4
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 5.1e-18 95.1 120 46.7
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 6.7e-18 94.7 168 42.3
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 8.7e-18 94.4 167 41.9
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 8.7e-18 94.4 167 41.9
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.5e-17 93.6 130 51.5
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.5e-17 93.6 128 48.4
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.5e-17 93.6 126 48.4
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.9e-17 93.2 161 41.6
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.5e-17 92.8 112 51.8
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.5e-17 92.8 128 47.7
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 3.3e-17 92.4 125 47.2
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 4.3e-17 92.0 127 48.8
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.6e-17 91.7 102 55.9
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 7.4e-17 91.3 129 46.5
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 9.6e-17 90.9 190 38.9
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.3e-16 90.5 124 46.8
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.3e-16 90.5 121 47.9
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.3e-16 90.5 163 42.9
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.6e-16 90.1 132 46.2
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.6e-16 90.1 129 45.0
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 2.1e-16 89.7 121 49.6
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.1e-16 89.7 118 50.0
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 2.8e-16 89.4 168 45.2
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.7e-16 89.0 121 47.1
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 4.8e-16 88.6 177 40.1
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 4.8e-16 88.6 177 40.1
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 4.8e-16 88.6 177 40.1
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 4.8e-16 88.6 125 48.0
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 6.2e-16 88.2 190 38.4
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.2e-16 88.2 137 46.7
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 6.2e-16 88.2 125 48.0
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 1.1e-15 87.4 126 46.8
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.4e-15 87.0 129 45.7
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.4e-15 86.3 126 46.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.4e-15 86.3 142 41.5
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.1e-15 85.9 172 41.3
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 4.0e-15 85.5 161 43.5
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 4.0e-15 85.5 126 46.0
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 5.3e-15 85.1 186 39.2
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 6.9e-15 84.7 125 48.0
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 6.9e-15 84.7 128 44.5
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.0e-15 84.3 169 39.1
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.0e-15 84.3 132 45.5
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.2e-14 84.0 118 50.0
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 2.0e-14 83.2 107 48.6
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.0e-14 83.2 138 42.0
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 2.0e-14 83.2 123 48.8
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 2.0e-14 83.2 123 48.8
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.0e-14 83.2 182 38.5
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.6e-14 82.8 162 38.9
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.6e-14 82.8 185 38.9
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 3.4e-14 82.4 117 46.2
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.5e-14 82.0 111 53.2
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.5e-14 82.0 177 37.3
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.8e-14 81.6 96 54.2
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 7.6e-14 81.3 142 43.7
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.0e-13 80.9 131 44.3
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.0e-13 80.9 173 36.4
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.3e-13 80.5 172 37.8
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.7e-13 80.1 162 37.0
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.2e-13 79.7 80 61.2
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 2.2e-13 79.7 112 45.5
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.8e-13 79.0 169 36.1
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 8.4e-13 77.8 163 39.3
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 8.4e-13 77.8 81 59.3
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 8.4e-13 77.8 129 42.6
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 8.4e-13 77.8 124 43.5
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.1e-12 77.4 143 42.7
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.1e-12 77.4 121 45.5
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.1e-12 77.4 121 45.5
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.4e-12 77.0 179 38.5
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.4e-12 77.0 94 50.0
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.4e-12 77.0 67 64.2
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.9e-12 76.6 137 44.5
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.9e-12 76.6 69 60.9
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 3.2e-12 75.9 119 46.2
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 3.2e-12 75.9 121 42.1
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 4.2e-12 75.5 160 40.6
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 4.2e-12 75.5 163 39.3
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.5e-12 75.1 130 40.0
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 5.5e-12 75.1 133 45.1
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 7.1e-12 74.7 129 41.9
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 9.3e-12 74.3 170 37.1
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.2e-11 73.9 86 58.1
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.2e-11 73.9 119 41.2
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.2e-11 73.9 120 44.2
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.6e-11 73.6 131 44.3
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.6e-11 73.6 76 56.6
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 2.1e-11 73.2 121 43.0
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.6e-11 72.0 168 36.9
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 6.1e-11 71.6 96 51.0
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 7.9e-11 71.2 169 35.5
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-10 70.9 122 44.3
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.0e-10 70.9 75 52.0
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 1.0e-10 70.9 102 48.0
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 1.3e-10 70.5 129 42.6
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.3e-10 70.5 170 36.5
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.3e-10 70.5 115 40.9
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.3e-10 70.5 162 34.0
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.8e-10 70.1 124 39.5
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.8e-10 70.1 128 43.8
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 3.0e-10 69.3 78 47.4
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 3.0e-10 69.3 118 40.7
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 5.1e-10 68.6 131 35.9
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 5.1e-10 68.6 69 56.5
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 6.7e-10 68.2 71 53.5
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 6.7e-10 68.2 158 33.5
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.1e-09 67.4 111 44.1
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.1e-09 67.4 111 44.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.1e-09 67.4 128 45.3
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.1e-09 67.4 128 43.8
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.5e-09 67.0 125 42.4
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.9e-09 66.6 122 40.2
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.9e-09 66.6 118 39.8
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.9e-09 66.6 131 37.4
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.9e-09 66.6 137 40.1
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.9e-09 66.6 86 48.8
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.5e-09 66.2 126 39.7
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 5.7e-09 65.1 129 41.1
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.7e-09 65.1 136 36.8
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 7.4e-09 64.7 87 46.0
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 9.7e-09 64.3 121 37.2
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 9.7e-09 64.3 87 48.3
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 9.7e-09 64.3 143 39.2
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.3e-08 63.9 118 39.8
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.8e-08 62.8 85 48.2
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 2.8e-08 62.8 127 37.8
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 2.8e-08 62.8 76 46.1
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 3.7e-08 62.4 105 39.0
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 6.3e-08 61.6 72 51.4
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 6.3e-08 61.6 100 40.0
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 8.2e-08 61.2 138 37.7
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 8.2e-08 61.2 90 43.3
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-07 60.8 118 40.7
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.1e-07 60.8 85 45.9
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.1e-07 60.8 129 38.0
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.1e-07 60.8 76 51.3
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.4e-07 60.5 109 39.4
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.4e-07 60.5 132 34.8
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.4e-07 60.5 71 49.3
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 1.4e-07 60.5 85 44.7
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.8e-07 60.1 55 63.6
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 3.1e-07 59.3 90 37.8
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 4.1e-07 58.9 107 42.1
Pp3c22_17930 Physcomitrium patens HOM05D030757 ORTHO05D004171 4.1e-07 58.9 90 37.8
Pp3c24_11300 Physcomitrium patens HOM05D030757 ORTHO05D004171 4.1e-07 58.9 100 40.0
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 4.1e-07 58.9 132 38.6
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.2e-06 57.4 85 44.7
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.2e-06 57.4 137 37.2
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.5e-06 57.0 75 49.3


User provided reference genes

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