Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 4.5e-60 235.0 175 100.0
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.6e-41 173.3 189 66.1
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 3.9e-35 152.1 185 68.6
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 4.0e-24 115.5 184 59.2
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 8.3e-22 107.8 135 53.3
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 3.5e-20 102.4 126 50.8
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.0e-19 100.9 122 63.9
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.3e-19 100.5 137 57.7
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 1.1e-18 97.4 142 58.5
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 2.5e-18 96.3 122 63.9
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 6.2e-17 91.7 106 65.1
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 8.1e-17 91.3 131 48.9
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.1e-16 90.9 126 53.2
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.3e-16 89.7 113 48.7
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 4.0e-16 89.0 123 61.0
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 4.0e-16 89.0 123 61.0
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 5.2e-16 88.6 123 59.3
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 2.6e-15 86.3 129 57.4
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 7.6e-15 84.7 123 48.0
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 7.6e-15 84.7 126 40.5
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.9e-14 82.8 175 41.7
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.9e-14 82.0 123 52.0
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 4.9e-14 82.0 129 41.9
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 6.4e-14 81.6 189 40.7
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 6.4e-14 81.6 123 42.3
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.4e-14 81.6 75 58.7
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 8.4e-14 81.3 75 58.7
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-13 80.9 73 54.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.1e-13 80.9 125 52.0
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.1e-13 80.9 121 48.8
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.1e-13 80.9 79 58.2
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-13 80.5 184 38.0
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.4e-13 80.5 124 40.3
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.4e-13 80.5 124 40.3
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.9e-13 80.1 123 41.5
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 1.9e-13 80.1 130 40.8
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 3.2e-13 79.3 182 39.6
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.2e-13 79.3 122 41.8
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 4.1e-13 79.0 181 37.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 5.4e-13 78.6 124 40.3
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 5.4e-13 78.6 177 40.1
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.4e-13 78.6 125 43.2
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 7.1e-13 78.2 179 41.9
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 7.1e-13 78.2 126 41.3
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 7.1e-13 78.2 137 47.4
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 9.2e-13 77.8 184 34.8
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 9.2e-13 77.8 184 37.5
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.2e-12 77.4 122 41.0
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.2e-12 77.4 122 41.0
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-12 76.6 184 36.4
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 2.1e-12 76.6 184 36.4
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 2.1e-12 76.6 184 36.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.1e-12 76.6 177 44.6
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.1e-12 76.6 125 47.2
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 2.7e-12 76.3 181 39.2
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 2.7e-12 76.3 181 39.2
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 3.5e-12 75.9 70 58.6
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 3.5e-12 75.9 71 57.7
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 3.5e-12 75.9 126 41.3
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 3.5e-12 75.9 129 54.3
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 4.6e-12 75.5 178 41.6
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 4.6e-12 75.5 126 41.3
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 4.6e-12 75.5 176 34.1
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 6.0e-12 75.1 121 44.6
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 7.8e-12 74.7 128 43.0
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.0e-11 74.3 122 38.5
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.3e-11 73.9 176 46.0
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.3e-11 73.9 179 43.0
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.3e-11 73.9 180 42.8
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.3e-11 73.9 142 44.4
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.7e-11 73.6 129 53.5
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.7e-11 73.6 124 39.5
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.3e-11 73.2 82 53.7
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.3e-11 73.2 69 50.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.3e-11 73.2 80 53.8
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.3e-11 73.2 125 39.2
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 3.0e-11 72.8 122 41.0
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 3.0e-11 72.8 123 47.2
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 3.9e-11 72.4 175 42.9
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.9e-11 72.4 118 55.1
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 3.9e-11 72.4 140 38.6
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 3.9e-11 72.4 122 37.7
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 5.1e-11 72.0 126 46.8
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 6.6e-11 71.6 136 50.7
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 8.6e-11 71.2 81 51.9
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 8.6e-11 71.2 143 46.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-10 70.9 65 55.4
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.1e-10 70.9 121 46.3
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.5e-10 70.5 69 55.1
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.5e-10 70.5 128 41.4
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.9e-10 70.1 131 52.7
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.9e-10 70.1 132 40.2
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.9e-10 70.1 67 59.7
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.5e-10 69.7 82 48.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 2.5e-10 69.7 185 44.9
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 2.5e-10 69.7 125 36.8
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 3.3e-10 69.3 116 53.4
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.3e-10 69.3 82 48.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 4.3e-10 68.9 178 43.8
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 5.6e-10 68.6 121 52.1
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 9.6e-10 67.8 126 54.8
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 9.6e-10 67.8 76 52.6
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.6e-09 67.0 136 36.8
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 2.1e-09 66.6 122 35.2
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 2.8e-09 66.2 124 41.9
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 4.7e-09 65.5 70 51.4
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 6.2e-09 65.1 130 37.7
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 6.2e-09 65.1 115 45.2
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 6.2e-09 65.1 68 54.4
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 8.1e-09 64.7 75 53.3
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.4e-08 63.9 136 37.5
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.4e-08 63.9 73 47.9
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.4e-08 63.9 73 47.9
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.8e-08 63.5 70 50.0
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.8e-08 63.5 75 46.7
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.8e-08 63.5 78 42.3
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.8e-08 63.5 86 44.2
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 1.8e-08 63.5 119 37.0
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 2.4e-08 63.2 127 51.2
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 2.4e-08 63.2 124 37.9
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.1e-08 62.8 71 45.1
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.2e-08 62.0 68 52.9
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 5.2e-08 62.0 73 50.7
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.2e-08 62.0 87 41.4
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 6.8e-08 61.6 73 45.2
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 6.8e-08 61.6 71 46.5
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 8.9e-08 61.2 130 36.9
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.2e-07 60.8 119 37.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.2e-07 60.8 87 41.4
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 1.2e-07 60.8 79 46.8
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.5e-07 60.5 70 52.9
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 2.0e-07 60.1 123 35.0
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 2.0e-07 60.1 123 35.0
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 2.0e-07 60.1 76 44.7
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 3.4e-07 59.3 130 33.8
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 4.4e-07 58.9 125 36.8
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 4.4e-07 58.9 125 36.8
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 5.8e-07 58.5 71 46.5
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 5.8e-07 58.5 70 51.4
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 7.6e-07 58.2 69 47.8
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 7.6e-07 58.2 88 39.8
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 7.6e-07 58.2 70 48.6
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 9.9e-07 57.8 125 36.0
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 9.9e-07 57.8 76 43.4
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.2e-06 56.6 75 50.7
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 3.8e-06 55.8 128 46.1
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 3.8e-06 55.8 73 42.5
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 4.9e-06 55.5 82 42.7
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.9e-06 55.5 73 46.6
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.9e-06 55.5 81 44.4
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 8.4e-06 54.7 70 48.6
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 8.4e-06 54.7 84 40.5


User provided reference genes

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