Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p070950 Quercus lobata HOM05D000100 ORTHO05D004702 1.4e-87 326.2 162 100.0
Cfa008904 Carpinus fangiana HOM05D000100 ORTHO05D004702 2.5e-49 199.1 115 81.7
CiPaw.06G090300 Carya illinoinensis HOM05D000100 ORTHO05D004702 5.5e-44 181.4 115 79.1
Haze_11933 Corylus avellana HOM05D002318 ORTHO05D004713 7.2e-44 181.0 114 76.3
Cfa008906 Carpinus fangiana HOM05D000100 ORTHO05D004702 2.3e-42 176.0 117 74.4
CiPaw.06G090200 Carya illinoinensis HOM05D000100 ORTHO05D004702 2.5e-41 172.6 117 73.5
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 3.7e-40 168.7 110 75.5
Atru.chr11.1687 Acer truncatum HOM05D000100 ORTHO05D004702 1.7e-37 159.8 124 68.5
Ciclev10031419m.g Citrus clementina HOM05D000100 ORTHO05D004702 2.2e-37 159.5 111 73.0
CsaV3_5G033150 Cucumis sativus L. HOM05D000100 ORTHO05D004702 2.2e-37 159.5 116 67.2
Atru.chr11.1686 Acer truncatum HOM05D000100 ORTHO05D004702 2.5e-36 156.0 124 67.7
CANSAT01G2651 Cannabis sativa HOM05D000100 ORTHO05D004702 2.5e-36 156.0 125 64.8
RcHm_v2.0_Chr4g0438831 Rosa chinensis HOM05D000100 ORTHO05D004702 2.5e-36 156.0 120 71.7
MELO3C012135.2 Cucumis melo HOM05D000100 ORTHO05D004702 3.2e-36 155.6 119 63.9
ClCG05G023870 Citrullus lanatus HOM05D000100 ORTHO05D004702 9.4e-36 154.1 113 67.3
Lalb_Chr17g0341021 Lupinus albus HOM05D000100 ORTHO05D004702 2.1e-35 152.9 118 66.1
Aqoxy3G03555 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 6.1e-35 151.4 126 61.9
Nn2g12291 Nelumbo nucifera HOM05D000100 ORTHO05D004702 2.3e-34 149.4 117 64.1
TWI75G1492 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 3.0e-34 149.1 115 64.3
Thecc.02G336200 Theobroma cacao HOM05D000100 ORTHO05D004702 3.9e-34 148.7 110 70.9
Thecc.02G335900 Theobroma cacao HOM05D000100 ORTHO05D004702 5.1e-34 148.3 110 68.2
Thecc.02G336100 Theobroma cacao HOM05D000100 ORTHO05D004702 2.6e-33 146.0 110 67.3
Duzib268G1512 Durio zibethinus HOM05D000100 ORTHO05D004702 3.3e-33 145.6 124 62.1
arahy.Tifrunner.gnm1.ann1.5S4EZI Arachis hypogaea HOM05D000100 ORTHO05D004702 5.7e-33 144.8 111 68.5
MD16G1064500 Malus domestica HOM05D000100 ORTHO05D004702 7.4e-33 144.4 121 63.6
Gohir.A13G080100 Gossypium hirsutum HOM05D000100 ORTHO05D004702 1.3e-32 143.7 110 66.4
Lj2g0007579 Lotus japonicus HOM05D000100 ORTHO05D004702 2.2e-32 142.9 110 62.7
Medtr5g043630 Medicago truncatula HOM05D000100 ORTHO05D004702 1.4e-31 140.2 114 63.2
TWI75G0577 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 1.4e-31 140.2 113 61.9
Aqoxy3G03556 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 2.4e-31 139.4 117 64.1
Rhsim08G0073000 Rhododendron simsii HOM05D000100 ORTHO05D004702 2.4e-31 139.4 120 59.2
RcHm_v2.0_Chr2g0166721 Rosa chinensis HOM05D000100 ORTHO05D004702 3.1e-31 139.0 112 65.2
PSO528G0286 Papaver somniferum HOM05D000100 ORTHO05D004702 7.0e-31 137.9 113 63.7
COL.COLO4_07432 Corchorus olitorius HOM05D000100 ORTHO05D004702 9.1e-31 137.5 124 52.4
FAN09G0588 Fragaria x ananassa HOM05D000100 ORTHO05D004702 1.2e-30 137.1 112 64.3
FAN05G0827 Fragaria x ananassa HOM05D000100 ORTHO05D004702 1.6e-30 136.7 112 64.3
Dinv33803 Davidia involucrata HOM05D000100 ORTHO05D004702 3.5e-30 135.6 113 61.9
MBI16_g15565_MAGBIO Magnolia biondii HOM05D000100 ORTHO05D004702 3.5e-30 135.6 111 62.2
Glyma.16G212000 Glycine max HOM05D000100 ORTHO05D004702 4.5e-30 135.2 111 61.3
Lj2g0020882 Lotus japonicus HOM05D000100 ORTHO05D004702 4.5e-30 135.2 112 62.5
FvH4_6g47620 Fragaria vesca HOM05D000100 ORTHO05D004702 7.7e-30 134.4 112 62.5
Glyma.09G162400 Glycine max HOM05D000100 ORTHO05D004702 1.3e-29 133.7 111 62.2
Prupe.3G260200 Prunus persica HOM05D000100 ORTHO05D004702 1.3e-29 133.7 110 63.6
Psat2g128120 Pisum sativum HOM05D000100 ORTHO05D004702 2.2e-29 132.9 111 60.4
Thecc.04G090100 Theobroma cacao HOM05D000100 ORTHO05D004702 5.0e-29 131.7 117 53.8
CANSAT64G1162 Cannabis sativa HOM05D000100 ORTHO05D004702 1.1e-28 130.6 115 59.1
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.9e-28 129.8 104 59.6
Gohir.A05G369800 Gossypium hirsutum HOM05D000100 ORTHO05D004702 1.9e-28 129.8 113 54.0
Manes.02G050500 Manihot esculenta HOM05D000100 ORTHO05D004702 1.9e-28 129.8 110 59.1
COL.COLO4_27928 Corchorus olitorius HOM05D000100 ORTHO05D004702 2.5e-28 129.4 112 58.0
Gorai.012G050700 Gossypium raimondii HOM05D000100 ORTHO05D004702 2.5e-28 129.4 113 54.0
Phvul.004G137900 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 7.2e-28 127.9 112 61.6
Phvul.004G138400 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 7.2e-28 127.9 110 60.0
Phvul.004G138450 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 7.2e-28 127.9 110 60.0
TPR.G39983 Trifolium pratense HOM05D000100 ORTHO05D004702 7.2e-28 127.9 110 60.9
VMungo0464G0240 Vigna mungo HOM05D000100 ORTHO05D004702 7.2e-28 127.9 111 61.3
Peaxi162Scf00166g00826 Petunia axillaris HOM05D000100 ORTHO05D004702 9.4e-28 127.5 112 58.9
Gohir.D04G045500 Gossypium hirsutum HOM05D000100 ORTHO05D004702 1.2e-27 127.1 113 53.1
Duzib147G0540 Durio zibethinus HOM05D000100 ORTHO05D004702 1.6e-27 126.7 117 53.0
Potri.017G089000 Populus trichocarpa HOM05D000100 ORTHO05D004702 2.1e-27 126.3 110 61.8
Sed0019811 Sechium edule HOM05D000100 ORTHO05D004702 6.1e-27 124.8 125 57.6
VMungo0464G1323 Vigna mungo HOM05D000100 ORTHO05D004702 6.1e-27 124.8 112 58.9
PGR083G0325 Punica granatum HOM05D000100 ORTHO05D004702 1.0e-26 124.0 123 56.1
CSS0024320 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 1.4e-26 123.6 112 55.4
VMungo0464G0024 Vigna mungo HOM05D000100 ORTHO05D004702 1.4e-26 123.6 112 59.8
Eucgr.J01468 Eucalyptus grandis HOM05D000100 ORTHO05D004702 3.0e-26 122.5 110 57.3
Sabra04G0066700 Salix brachista HOM05D000100 ORTHO05D004702 3.0e-26 122.5 110 59.1
Sabra17G0078700 Salix brachista HOM05D000100 ORTHO05D004702 3.0e-26 122.5 110 60.0
Ca_18817_v3 Cicer arietinum L. HOM05D000100 ORTHO05D004702 4.0e-26 122.1 112 58.0
DCAR_025404 Daucus carota HOM05D000100 ORTHO05D004702 4.0e-26 122.1 119 54.6
Medtr4g082810 Medicago truncatula HOM05D000100 ORTHO05D004702 5.2e-26 121.7 128 51.6
Sed0003026 Sechium edule HOM05D000100 ORTHO05D004702 5.2e-26 121.7 122 51.6
Sopen02g033250 Solanum pennellii HOM05D000100 ORTHO05D004702 5.2e-26 121.7 112 56.2
Manes.09G159600 Manihot esculenta HOM05D000100 ORTHO05D004702 6.7e-26 121.3 125 53.6
Potri.004G126000 Populus trichocarpa HOM05D000100 ORTHO05D004702 1.5e-25 120.2 110 58.2
SGA_v2.0_scaffold413G51162 Striga asiatica HOM05D000100 ORTHO05D004702 1.5e-25 120.2 110 54.5
DCAR_021666 Daucus carota HOM05D000100 ORTHO05D004702 2.0e-25 119.8 122 52.5
QL02p039350 Quercus lobata HOM05D000100 ORTHO05D004702 5.7e-25 118.2 110 53.6
Nn3g17373 Nelumbo nucifera HOM05D000100 ORTHO05D004702 7.5e-25 117.9 101 65.3
Sc11g0004820 Simmondsia chinensis HOM05D000100 ORTHO05D004702 7.5e-25 117.9 116 50.0
Migut.H00660 Erythranthe guttata HOM05D000100 ORTHO05D004702 1.7e-24 116.7 121 49.6
FvH4_6g47570 Fragaria vesca HOM05D000100 ORTHO05D004702 1.7e-24 116.7 118 52.5
FvH4_6g47580 Fragaria vesca HOM05D000100 ORTHO05D004702 1.7e-24 116.7 121 51.2
Migut.H00659 Erythranthe guttata HOM05D000100 ORTHO05D004702 2.2e-24 116.3 110 53.6
SalBow1G3072 Salvia bowleyana HOM05D000100 ORTHO05D004702 3.7e-24 115.5 110 52.7
FAN14G5013 Fragaria x ananassa HOM05D000100 ORTHO05D004702 4.8e-24 115.2 118 51.7
Medtr4g082820 Medicago truncatula HOM05D000100 ORTHO05D004702 4.8e-24 115.2 110 54.5
QL02p073358 Quercus lobata HOM05D000100 ORTHO05D004702 4.8e-24 115.2 112 52.7
FAN14G0486 Fragaria x ananassa HOM05D000100 ORTHO05D004702 6.3e-24 114.8 103 59.2
FAN14G3309 Fragaria x ananassa HOM05D000100 ORTHO05D004702 6.3e-24 114.8 103 59.2
Prupe.3G260000 Prunus persica HOM05D000100 ORTHO05D004702 1.1e-23 114.0 111 55.0
Prupe.3G260100 Prunus persica HOM05D000100 ORTHO05D004702 1.1e-23 114.0 111 54.1
CSS0016013 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 1.8e-23 113.2 111 54.1
vmacro05669 Vaccinium macrocarpon HOM05D000100 ORTHO05D004702 3.1e-23 112.5 122 50.0
Medtr6g078320 Medicago truncatula HOM05D000100 ORTHO05D004702 5.3e-23 111.7 120 51.7
FAN09G3446 Fragaria x ananassa HOM05D000100 ORTHO05D004702 7.0e-23 111.3 119 52.1
MD17G1055700 Malus domestica HOM05D000100 ORTHO05D004702 7.0e-23 111.3 118 50.0
Rhsim10G0047000 Rhododendron simsii HOM05D000100 ORTHO05D004702 7.0e-23 111.3 112 51.8
RcHm_v2.0_Chr2g0166701 Rosa chinensis HOM05D000100 ORTHO05D004702 7.0e-23 111.3 118 50.8
RcHm_v2.0_Chr2g0166671 Rosa chinensis HOM05D000100 ORTHO05D004702 1.2e-22 110.5 116 50.9
PGR083G2848 Punica granatum HOM05D000100 ORTHO05D004702 1.6e-22 110.2 127 47.2
Sc11g0004830 Simmondsia chinensis HOM05D000100 ORTHO05D004702 4.5e-22 108.6 117 48.7
CSS0031209 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 5.9e-22 108.2 111 55.9
PGR083G1384 Punica granatum HOM05D000100 ORTHO05D004702 5.9e-22 108.2 127 47.2
Dinv11491 Davidia involucrata HOM05D000100 ORTHO05D004702 7.7e-22 107.8 110 50.0
PGR083G1316 Punica granatum HOM05D000100 ORTHO05D004702 1.0e-21 107.5 125 48.8
AUR62018135 Chenopodium quinoa HOM05D000100 ORTHO05D004702 2.2e-21 106.3 120 48.3
Eucgr.E03236 Eucalyptus grandis HOM05D000100 ORTHO05D004702 5.0e-21 105.1 122 49.2
Oeu062141.1 Olea europaea HOM05D000100 ORTHO05D004702 5.0e-21 105.1 122 48.4
Eucgr.D01288 Eucalyptus grandis HOM05D000100 ORTHO05D004702 6.5e-21 104.8 120 50.8
Lj4C115T14 Lonicera japonica HOM05D000100 ORTHO05D004702 2.5e-20 102.8 117 45.3
PGSC0003DMG400039917 Solanum tuberosum HOM05D000100 ORTHO05D004702 2.5e-20 102.8 101 53.5
EL10Ac2g03497 Beta vulgaris HOM05D000100 ORTHO05D004702 5.5e-20 101.7 125 44.8
Eucgr.E03231 Eucalyptus grandis HOM05D000100 ORTHO05D004702 7.2e-20 101.3 120 49.2
Eucgr.E03233 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.6e-19 100.1 122 48.4
CSS0029818 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 2.1e-19 99.8 112 48.2
Cc03_g14830 Coffea canephora HOM05D000100 ORTHO05D004702 2.7e-19 99.4 129 48.8
Os06g0288300 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 3.6e-19 99.0 100 55.0
Zm00001eb280950 Zea mays HOM05D000100 ORTHO05D004702 4.7e-19 98.6 120 42.5
Eucgr.E03232 Eucalyptus grandis HOM05D000100 ORTHO05D004702 6.1e-19 98.2 120 48.3
Os06g0289200 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 6.1e-19 98.2 114 49.1
Cc03_g14880 Coffea canephora HOM05D000009 ORTHO05D004702 1.4e-18 97.1 129 48.1
unitig_744.g24271 Utricularia gibba HOM05D000100 ORTHO05D030565 1.2e-17 94.0 102 50.0
Zm00001eb280920 Zea mays HOM05D000100 ORTHO05D004702 1.5e-17 93.6 115 48.7
Zm00001eb280930 Zea mays HOM05D000100 ORTHO05D004702 1.5e-17 93.6 111 39.6
Solyc02g088500.1 Solanum lycopersicum HOM05D000100 ORTHO05D004702 2.6e-17 92.8 112 42.0
Dinv33804 Davidia involucrata HOM05D000100 ORTHO05D004702 3.4e-17 92.4 101 49.5
unitig_744.g24269 Utricularia gibba HOM05D000100 ORTHO05D004702 3.4e-17 92.4 111 49.5
Sopen02g033210 Solanum pennellii HOM05D000100 ORTHO05D004702 5.7e-17 91.7 112 42.9
Os06g0289900 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 7.5e-17 91.3 112 41.1
Nitab4.5_0000565g0060 Nicotiana tabacum HOM05D000100 ORTHO05D004702 4.8e-16 88.6 112 40.2
Lj4C115T12 Lonicera japonica HOM05D000100 ORTHO05D004702 1.4e-15 87.0 112 45.5
PGSC0003DMG400038989 Solanum tuberosum HOM05D000100 ORTHO05D004702 1.4e-15 87.0 112 40.2
HPP92_026691 Vanilla planifolia HOM05D000100 ORTHO05D004702 1.8e-15 86.7 124 46.0
COL.COLO4_27929 Corchorus olitorius HOM05D000100 ORTHO05D004702 4.1e-15 85.5 70 60.0
Zm00001eb380880 Zea mays HOM05D000100 ORTHO05D004702 7.0e-15 84.7 114 44.7
Nn1g09114 Nelumbo nucifera HOM05D000100 ORTHO05D004702 9.1e-15 84.3 141 45.4
Zm00001eb381410 Zea mays HOM05D000100 ORTHO05D004702 9.1e-15 84.3 114 44.7
Eucgr.E03234 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.3e-13 80.5 106 47.2
Nitab4.5_0008573g0060 Nicotiana tabacum HOM05D000100 ORTHO05D004702 1.7e-13 80.1 99 38.4
Hma1.2p1_1813F.1_g303870 Hydrangea macrophylla HOM05D000100 ORTHO05D004702 2.2e-13 79.7 111 41.4
Nn4g23330 Nelumbo nucifera HOM05D000100 ORTHO05D004702 5.0e-13 78.6 111 44.1
EL10Ac2g03041 Beta vulgaris HOM05D000100 ORTHO05D004702 8.5e-13 77.8 84 46.4
Eucgr.E03235 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.5e-12 77.0 71 53.5
SalBow4G2413 Salvia bowleyana HOM05D000100 ORTHO05D030565 5.2e-10 68.6 75 44.0
ATR0111G030 Amborella trichopoda HOM05D000100 ORTHO05D004702 8.8e-10 67.8 113 38.9
SEGI_10832 Sequoiadendron giganteum HOM05D000100 ORTHO05D000052 5.7e-09 65.1 114 36.0
SEGI_06000 Sequoiadendron giganteum HOM05D000100 ORTHO05D000052 3.7e-08 62.4 123 35.8
Actinidia26242 Actinidia chinensis HOM05D000100 ORTHO05D004702 8.3e-08 61.2 85 41.2
Migut.H00661 Erythranthe guttata HOM05D000100 ORTHO05D004702 1.1e-07 60.8 106 35.8
SalBow5G2907 Salvia bowleyana HOM05D003262 ORTHO05D030565 1.1e-07 60.8 95 36.8
VMungo1383G1368 Vigna mungo HOM05D000100 ORTHO05D435455 1.1e-07 60.8 63 52.4
Phvul.004G138200 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 1.8e-07 60.1 70 45.7
Dinv44084 Davidia involucrata HOM05D000100 ORTHO05D000052 5.4e-07 58.5 129 31.0
ECA246G1680 Erigeron canadensis HOM05D001596 ORTHO05D007454 7.0e-07 58.2 58 46.6
SalBow8G0546 Salvia bowleyana HOM05D000100 ORTHO05D030565 9.2e-07 57.8 75 38.7
PGR031G2451 Punica granatum HOM05D000100 ORTHO05D000052 5.9e-06 55.1 131 31.3


User provided reference genes

Program Settings