Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p070744 Quercus lobata HOM05D007541 ORTHO05D009404 1.5e-41 172.9 121 100.0
QL03p071059 Quercus lobata HOM05D007541 ORTHO05D009404 3.7e-37 158.3 121 93.4
CiPaw.06G090800 Carya illinoinensis HOM05D007541 ORTHO05D009404 3.9e-18 95.1 126 46.8
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 1.1e-17 93.6 89 52.8
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 1.5e-17 93.2 129 55.0
Duzib248G1062 Durio zibethinus HOM05D007541 ORTHO05D009404 3.7e-13 78.6 66 59.1
MELO3C012140.2 Cucumis melo HOM05D007541 ORTHO05D009404 6.4e-13 77.8 65 60.0
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 6.4e-13 77.8 67 59.7
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 6.4e-13 77.8 67 59.7
Duzib268G0968 Durio zibethinus HOM05D007541 ORTHO05D009404 1.1e-12 77.0 59 62.7
Thecc.02G334900 Theobroma cacao HOM05D007541 ORTHO05D009404 1.4e-12 76.6 67 61.2
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 1.9e-12 76.3 61 60.7
CsaV3_5G033190 Cucumis sativus L. HOM05D007541 ORTHO05D009404 2.4e-12 75.9 127 48.0
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 2.4e-12 75.9 121 43.8
Manes.01G029500 Manihot esculenta HOM05D007541 ORTHO05D009404 5.4e-12 74.7 92 46.7
Potri.008G093500 Populus trichocarpa HOM05D007541 ORTHO05D009404 2.7e-11 72.4 95 50.5
BcaB03g11998 Brassica carinata HOM05D007541 ORTHO05D009404 4.6e-11 71.6 104 41.3
PGR102G1405 Punica granatum HOM05D007541 ORTHO05D009404 4.6e-11 71.6 59 62.7
A09p39990 Brassica napus HOM05D007541 ORTHO05D009404 6.0e-11 71.2 58 56.9
C07p19450 Brassica napus HOM05D007541 ORTHO05D009404 6.0e-11 71.2 102 40.2
BolC7t42463H Brassica oleracea HOM05D007541 ORTHO05D009404 6.0e-11 71.2 102 40.2
BraA09t39497Z Brassica rapa HOM05D007541 ORTHO05D009404 6.0e-11 71.2 58 56.9
Lalb_Chr17g0341081 Lupinus albus HOM05D007541 ORTHO05D009404 6.0e-11 71.2 64 54.7
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 3.0e-10 68.9 62 58.1
AL2G28420 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 3.9e-10 68.6 63 55.6
Carub.0002s1591 Capsella rubella HOM05D007541 ORTHO05D009404 3.9e-10 68.6 63 55.6
AT1G69320 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 5.1e-10 68.2 63 55.6
BraA07t29071Z Brassica rapa HOM05D007541 ORTHO05D009404 5.1e-10 68.2 96 42.7
CARHR062200 Cardamine hirsuta HOM05D007541 ORTHO05D009404 5.1e-10 68.2 63 55.6
FAN22G1195 Fragaria x ananassa HOM05D007541 ORTHO05D009404 5.1e-10 68.2 63 57.1
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 5.1e-10 68.2 61 57.4
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 6.6e-10 67.8 58 58.6
A07p13000 Brassica napus HOM05D007541 ORTHO05D009404 6.6e-10 67.8 73 49.3
Thhalv10019344m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 6.6e-10 67.8 63 54.0
BcaB05g21930 Brassica carinata HOM05D007541 ORTHO05D009404 8.6e-10 67.4 73 50.7
BcaC01g01749 Brassica carinata HOM05D007541 ORTHO05D009404 8.6e-10 67.4 68 51.5
C03p72330 Brassica napus HOM05D007541 ORTHO05D009404 8.6e-10 67.4 68 51.5
BolC3t19527H Brassica oleracea HOM05D007541 ORTHO05D009404 8.6e-10 67.4 68 51.5
Sopen05g007360 Solanum pennellii HOM05D007541 ORTHO05D009404 8.6e-10 67.4 53 58.5
A08p27410 Brassica napus HOM05D007541 ORTHO05D009404 1.1e-09 67.0 68 51.5
BraA08t34682Z Brassica rapa HOM05D007541 ORTHO05D009404 1.1e-09 67.0 68 51.5
Carub.0001s2443 Capsella rubella HOM05D007541 ORTHO05D009404 1.1e-09 67.0 93 41.9
Glyma.01G056400 Glycine max HOM05D007541 ORTHO05D009404 1.1e-09 67.0 59 55.9
Lalb_Chr05g0220081 Lupinus albus HOM05D007541 ORTHO05D009404 1.1e-09 67.0 57 59.6
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 1.5e-09 66.6 58 56.9
Ciclev10033671m.g Citrus clementina HOM05D007541 ORTHO05D009404 1.5e-09 66.6 59 55.9
Phvul.002G081400 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 1.5e-09 66.6 65 49.2
AT1G26600 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 1.9e-09 66.2 58 56.9
BcaB03g14076 Brassica carinata HOM05D007541 ORTHO05D009404 1.9e-09 66.2 71 50.7
BcaC05g26410 Brassica carinata HOM05D007541 ORTHO05D009404 1.9e-09 66.2 58 53.4
BolC5t31179H Brassica oleracea HOM05D007541 ORTHO05D009404 1.9e-09 66.2 58 53.4
Thhalv10009109m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 1.9e-09 66.2 60 56.7
FAN17G1776 Fragaria x ananassa HOM05D007541 ORTHO05D009404 2.5e-09 65.9 63 55.6
Lalb_Chr04g0255771 Lupinus albus HOM05D007541 ORTHO05D009404 2.5e-09 65.9 57 57.9
THA.LOC104805033 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 2.5e-09 65.9 62 53.2
FAN12G3046 Fragaria x ananassa HOM05D007541 ORTHO05D009404 3.3e-09 65.5 64 56.2
C05p24450 Brassica napus HOM05D007541 ORTHO05D009404 4.3e-09 65.1 60 55.0
FvH4_4g30410 Fragaria vesca HOM05D007541 ORTHO05D009404 4.3e-09 65.1 63 55.6
Glyma.20G027000 Glycine max HOM05D007541 ORTHO05D009404 4.3e-09 65.1 59 52.5
Sed0024262 Sechium edule HOM05D007541 ORTHO05D009404 4.3e-09 65.1 63 57.1
TPR.G34056 Trifolium pratense HOM05D007541 ORTHO05D009404 4.3e-09 65.1 61 52.5
Manes.05G108300 Manihot esculenta HOM05D007541 ORTHO05D009404 5.6e-09 64.7 63 61.9
CARHR025370 Cardamine hirsuta HOM05D007541 ORTHO05D009404 7.3e-09 64.3 72 47.2
Hma1.2p1_0354F.1_g133580 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 7.3e-09 64.3 122 41.0
Prupe.1G283100 Prunus persica HOM05D007541 ORTHO05D009404 7.3e-09 64.3 65 53.8
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 9.5e-09 63.9 60 58.3
RcHm_v2.0_Chr4g0438701 Rosa chinensis HOM05D007541 ORTHO05D009404 1.2e-08 63.5 64 56.2
Sabra10G0122200 Salix brachista HOM05D007541 ORTHO05D009404 1.2e-08 63.5 62 56.5
BcaC05g26408 Brassica carinata HOM05D007541 ORTHO05D009404 1.6e-08 63.2 89 41.6
Glyma.02G115000 Glycine max HOM05D007541 ORTHO05D009404 1.6e-08 63.2 59 54.2
Lalb_Chr10g0098651 Lupinus albus HOM05D007541 ORTHO05D009404 1.6e-08 63.2 59 55.9
TPR.G741 Trifolium pratense HOM05D007541 ORTHO05D009404 2.1e-08 62.8 61 50.8
TPR.G24449 Trifolium pratense HOM05D007541 ORTHO05D009404 2.8e-08 62.4 60 56.7
TWI79G0012 Tripterygium wilfordii HOM05D007541 ORTHO05D009404 3.6e-08 62.0 61 60.7
VMungo1215G1351 Vigna mungo HOM05D007541 ORTHO05D009404 4.7e-08 61.6 59 50.8
Lj2g0027708 Lotus japonicus HOM05D007541 ORTHO05D009404 6.2e-08 61.2 59 54.2
Phvul.002G168200 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 8.1e-08 60.8 61 52.5
Medtr5g043830 Medicago truncatula HOM05D007541 ORTHO05D009404 4.0e-07 58.5 57 54.4
Lj4g0006658 Lotus japonicus HOM05D007541 ORTHO05D009404 6.8e-07 57.8 58 48.3
Gorai.013G091800 Gossypium raimondii HOM05D007541 ORTHO05D009404 8.9e-07 57.4 48 62.5
Lalb_Chr04g0255761 Lupinus albus HOM05D007541 ORTHO05D009404 1.2e-06 57.0 59 52.5
DCAR_007184 Daucus carota HOM05D007541 ORTHO05D009404 1.5e-06 56.6 32 78.1
Sopen05g007350 Solanum pennellii HOM05D007541 ORTHO05D009404 3.4e-06 55.5 50 52.0
Zm00001eb152280 Zea mays HOM05D029058 ORTHO05D009404 3.4e-06 55.5 38 65.8
Zm00001eb338500 Zea mays HOM05D034298 ORTHO05D006915 3.4e-06 55.5 43 62.8
ClCG05G023820 Citrullus lanatus HOM05D007541 ORTHO05D009404 7.6e-06 54.3 55 50.9
DCAR_027454 Daucus carota HOM05D007541 ORTHO05D009404 7.6e-06 54.3 23 100.0
Migut.D01674 Erythranthe guttata HOM05D007541 ORTHO05D009404 7.6e-06 54.3 23 100.0
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 9.9e-06 53.9 61 47.5
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 9.9e-06 53.9 61 47.5


User provided reference genes

Program Settings