Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 0.0e+00 1279.6 657 100.0
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 2.8e-256 888.6 666 71.6
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 4.9e-232 808.1 629 70.3
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 1.8e-231 806.2 628 69.3
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 3.9e-181 639.0 666 54.7
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 8.7e-181 637.9 659 54.8
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 6.7e-173 611.7 673 52.6
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 3.8e-168 595.9 760 47.8
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 2.5e-167 593.2 650 54.0
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 4.6e-166 589.0 674 51.2
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 3.0e-165 586.3 651 54.1
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 3.0e-165 586.3 627 53.3
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 1.4e-162 577.4 759 48.5
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 4.1e-162 575.9 737 48.0
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 5.3e-162 575.5 810 45.9
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 6.5e-160 568.5 745 46.8
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 3.6e-158 562.8 745 47.5
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 3.9e-157 559.3 749 47.7
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 5.1e-157 558.9 639 51.2
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 6.7e-157 558.5 654 51.7
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.7e-155 553.9 742 46.6
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 1.1e-154 551.2 714 46.6
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.0e-152 544.7 654 52.4
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.5e-152 542.0 701 47.1
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 4.2e-151 539.3 738 46.1
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 3.6e-150 536.2 748 45.9
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.3e-149 533.5 737 45.5
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.7e-149 531.9 744 45.0
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 7.7e-145 518.5 702 46.0
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 2.2e-144 516.9 745 43.6
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 2.5e-143 513.5 744 44.5
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 6.7e-141 505.4 677 46.4
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 2.8e-139 500.0 708 45.1
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 9.1e-138 495.0 664 46.2
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.3e-136 491.1 664 47.1
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 3.8e-136 489.6 717 45.7
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 4.7e-134 482.6 733 43.7
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 5.2e-133 479.2 725 44.0
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 5.7e-132 475.7 676 44.8
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 1.7e-131 474.2 794 41.8
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 4.8e-131 472.6 779 43.8
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 1.2e-129 468.0 714 43.7
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 1.3e-128 464.5 719 43.9
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 1.3e-128 464.5 719 44.1
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 1.7e-128 464.2 636 45.1
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 8.5e-128 461.8 755 42.5
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 4.2e-127 459.5 449 57.7
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 4.2e-127 459.5 689 43.4
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 1.2e-126 458.0 381 64.8
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 1.2e-126 458.0 702 43.3
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 4.7e-126 456.1 728 42.3
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 1.8e-125 454.1 720 42.5
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 8.8e-125 451.8 738 41.5
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 1.2e-124 451.4 682 44.7
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 2.6e-124 450.3 700 44.0
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.7e-123 447.6 701 44.1
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 1.1e-122 444.9 546 48.7
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 1.8e-122 444.1 648 43.2
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.8e-122 444.1 819 38.2
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 3.1e-122 443.4 703 44.0
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 7.0e-122 442.2 716 42.7
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 9.1e-122 441.8 449 55.0
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 9.1e-122 441.8 738 40.7
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 1.6e-121 441.0 647 45.0
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 1.5e-119 434.5 673 42.5
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 2.5e-119 433.7 639 42.9
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 3.3e-119 433.3 644 42.2
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 5.5e-119 432.6 692 41.3
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 9.5e-119 431.8 563 49.0
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.8e-118 430.3 692 41.5
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 2.3e-117 427.2 393 59.0
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 4.0e-117 426.4 372 60.8
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 8.9e-117 425.2 476 52.3
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 2.8e-115 420.2 713 40.7
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.1e-114 418.3 565 47.6
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 1.2e-113 414.8 389 56.0
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.3e-112 411.4 354 62.1
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 3.8e-112 409.8 822 36.5
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.7e-110 402.9 355 59.4
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 6.1e-110 402.5 621 41.4
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 2.3e-109 400.6 511 48.1
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.6e-108 397.1 385 55.3
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 3.4e-108 396.7 385 55.3
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 1.7e-107 394.4 704 39.1
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 1.7e-107 394.4 704 39.1
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 3.7e-107 393.3 658 40.3
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 3.7e-107 393.3 704 39.5
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 8.3e-107 392.1 388 55.7
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 9.2e-106 388.7 452 50.4
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 1.3e-104 384.8 692 39.9
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 3.0e-104 383.6 475 48.6
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 3.0e-104 383.6 477 47.8
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 1.1e-103 381.7 683 39.4
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.5e-103 381.3 664 39.6
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 6.2e-102 375.9 339 56.3
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.3e-101 374.0 331 58.9
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.5e-100 371.3 347 58.8
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 2.0e-100 370.9 311 60.5
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 4.4e-100 369.8 684 38.6
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 6.4e-99 365.9 684 38.0
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 6.4e-99 365.9 684 38.6
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 1.9e-98 364.4 690 37.7
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 5.4e-98 362.8 684 37.7
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 2.7e-97 360.5 465 46.7
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.2e-94 351.7 366 53.8
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 5.2e-93 346.3 367 52.3
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 1.9e-87 327.8 436 44.5
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 9.2e-82 308.9 243 67.9
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.1e-74 285.4 593 36.6
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 9.6e-71 272.3 204 68.6
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 1.6e-70 271.6 205 66.8
QL01p034582 Quercus lobata HOM05D005647 ORTHO05D006968 1.6e-70 271.6 278 56.8
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 5.1e-64 250.0 493 37.5
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.3e-62 245.4 271 46.5
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 5.8e-60 236.5 349 39.0
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 7.1e-58 229.6 230 49.6
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 2.7e-57 227.6 299 44.5
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 1.2e-49 202.2 425 32.9
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 3.6e-41 174.1 201 49.3
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 5.7e-39 166.8 129 68.2
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 3.4e-36 157.5 123 66.7
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 1.7e-35 155.2 175 49.7
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 3.2e-34 151.0 163 50.9
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 5.5e-34 150.2 113 68.1
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 2.7e-25 121.3 277 29.6
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 1.8e-24 118.6 128 45.3
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 6.7e-24 116.7 62 93.5
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 2.8e-22 111.3 107 53.3
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 2.0e-20 105.1 86 61.6
Cfa010667 Carpinus fangiana HOM05D001360 ORTHO05D001231 5.9e-20 103.6 108 56.5
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 5.0e-19 100.5 83 60.2
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 3.0e-16 91.3 180 30.0
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 2.6e-15 88.2 59 72.9
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 2.6e-15 88.2 59 72.9
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 2.2e-11 75.1 56 66.1
Cfa010666 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.9e-10 72.0 53 71.7
QL01p034573 Quercus lobata HOM05D005647 ORTHO05D006968 1.2e-09 69.3 58 67.2
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 4.8e-06 57.4 74 43.2


User provided reference genes

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