Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 6.7e-102 374.0 188 100.0
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 6.7e-102 374.0 188 100.0
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.0e-94 350.1 186 92.5
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.7e-89 332.8 188 86.7
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 5.5e-88 327.8 188 86.2
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.6e-87 326.2 188 83.5
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 2.7e-87 325.5 188 84.6
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.7e-87 325.5 186 86.0
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.7e-87 325.5 186 86.0
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 6.1e-87 324.3 188 85.1
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.8e-86 322.8 188 84.0
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 2.6e-85 318.9 187 83.4
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 3.3e-85 318.5 188 83.5
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 5.7e-85 317.8 188 84.0
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 7.4e-85 317.4 188 81.9
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.3e-84 316.6 188 82.4
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 1.7e-84 316.2 187 83.4
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 2.8e-84 315.5 188 81.9
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 3.7e-84 315.1 188 83.0
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 3.7e-84 315.1 188 83.0
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 3.7e-84 315.1 188 83.0
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 1.8e-83 312.8 187 81.8
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 4.1e-83 311.6 188 81.4
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 9.1e-83 310.5 185 82.2
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 9.1e-83 310.5 185 82.2
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 3.5e-82 308.5 156 98.1
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 4.5e-82 308.1 207 75.4
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.3e-81 306.6 186 82.3
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 2.2e-81 305.8 186 81.2
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 2.2e-81 305.8 187 80.7
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 3.8e-81 305.1 187 80.2
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 3.8e-81 305.1 188 81.4
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 6.5e-81 304.3 187 80.2
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.1e-79 299.3 185 80.0
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 2.7e-79 298.9 185 77.3
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.6e-79 298.5 190 78.9
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 1.4e-78 296.6 186 78.0
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.8e-78 296.2 188 79.3
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 1.8e-78 296.2 203 74.9
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 4.0e-78 295.0 209 72.2
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 5.2e-78 294.7 188 77.7
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 8.8e-78 293.9 188 76.1
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.5e-77 293.1 188 76.1
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 4.4e-77 291.6 185 77.3
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 9.7e-77 290.4 188 75.0
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.7e-76 289.7 188 75.0
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.7e-76 289.7 188 77.7
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.7e-76 289.7 188 77.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 2.8e-76 288.9 187 75.9
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 3.7e-76 288.5 188 74.5
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 6.3e-76 287.7 188 73.9
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.4e-75 286.6 184 76.6
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.8e-75 286.2 188 72.9
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.8e-75 286.2 188 76.6
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.3e-75 284.6 186 74.2
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 5.3e-75 284.6 188 73.4
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 5.3e-75 284.6 187 73.3
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 7.0e-75 284.3 188 75.0
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.2e-74 283.5 187 74.3
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.0e-74 282.7 176 77.8
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 3.5e-74 282.0 188 73.9
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.5e-74 282.0 186 74.2
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 5.9e-74 281.2 182 76.4
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.9e-74 281.2 186 74.2
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 7.7e-74 280.8 185 77.3
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.7e-73 279.6 182 73.6
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 2.2e-73 279.3 186 72.6
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 2.9e-73 278.9 188 73.4
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 5.0e-73 278.1 187 72.7
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 5.0e-73 278.1 185 73.5
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 1.1e-72 276.9 184 73.9
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.9e-72 276.2 185 75.7
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 4.2e-72 275.0 186 71.0
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 4.2e-72 275.0 208 69.2
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 5.5e-72 274.6 188 72.3
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 9.4e-72 273.9 186 72.0
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 9.4e-72 273.9 188 71.8
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 1.6e-71 273.1 188 70.7
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 1.6e-71 273.1 188 71.8
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 1.6e-71 273.1 188 70.2
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 2.1e-71 272.7 179 76.0
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 2.1e-71 272.7 186 71.5
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 8.0e-71 270.8 202 67.3
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 8.0e-71 270.8 189 72.5
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.4e-70 270.0 202 66.8
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 2.3e-70 269.2 156 85.3
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.3e-70 269.2 271 55.4
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 3.0e-70 268.9 183 71.0
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 8.8e-70 267.3 152 85.5
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 5.7e-69 264.6 182 70.3
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.3e-68 263.5 187 70.1
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 3.1e-67 258.8 188 68.1
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 3.1e-67 258.8 188 67.6
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 9.1e-67 257.3 185 68.1
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.1e-64 250.4 162 77.2
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 7.2e-64 247.7 188 66.5
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 3.6e-63 245.4 182 64.8
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 2.3e-62 242.7 182 63.7
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.4e-59 232.6 191 61.3
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 7.0e-59 231.1 186 58.1
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 7.8e-58 227.6 178 61.8
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 3.6e-55 218.8 185 64.9
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.0e-54 217.2 185 57.3
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 4.4e-53 211.8 182 55.5
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 3.7e-52 208.8 207 57.0
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 6.4e-52 208.0 185 53.5
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.4e-51 206.8 185 54.1
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 3.2e-51 205.7 182 54.4
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 2.7e-50 202.6 185 53.5
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 1.3e-49 200.3 185 53.0
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 2.8e-47 192.6 182 52.2
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 3.6e-47 192.2 175 60.6
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 2.3e-46 189.5 182 52.2
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 2.0e-45 186.4 182 51.1
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 5.8e-45 184.9 182 50.5
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 5.8e-45 184.9 182 50.5
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 5.8e-45 184.9 182 50.5
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.4e-43 180.3 114 81.6
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 2.4e-43 179.5 182 49.5
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 1.6e-42 176.8 182 48.4
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 1.6e-42 176.8 182 48.4
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 2.8e-39 166.0 148 54.7
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.8e-38 163.3 155 60.0
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.4e-37 159.1 111 73.9
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 1.7e-33 146.7 175 45.7
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 4.9e-28 128.6 78 79.5
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 8.4e-28 127.9 102 67.6
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 2.4e-27 126.3 84 75.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 3.5e-26 122.5 80 76.2
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.6e-23 113.6 87 63.2
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 1.1e-22 110.9 73 68.5
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 9.9e-21 104.4 151 41.1
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 6.4e-20 101.7 155 38.1
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.4e-20 101.3 76 63.2
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.1e-19 100.9 81 61.7
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.4e-19 99.8 76 61.8
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 9.3e-19 97.8 159 35.2
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 2.7e-18 96.3 119 41.2
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 2.7e-18 96.3 61 73.8
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 4.6e-18 95.5 97 54.6
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 3.4e-13 79.3 90 55.6
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.8e-13 78.6 66 63.6
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 1.1e-06 57.8 45 57.8


User provided reference genes

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