Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p068834 Quercus lobata HOM05D000005 ORTHO05D010574 0.0e+00 1461.4 714 100.0
QL03p063704 Quercus lobata HOM05D000005 ORTHO05D010574 2.6e-122 443.7 308 79.5
Cfa011656 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.7e-105 387.9 928 31.5
QL04p027112 Quercus lobata HOM05D000005 ORTHO05D010574 4.6e-95 353.2 734 31.9
Cfa008053 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.9e-94 350.1 848 32.8
QL04p027472 Quercus lobata HOM05D000005 ORTHO05D010574 6.5e-89 332.8 825 29.6
Haze_17731 Corylus avellana HOM05D000005 ORTHO05D010574 8.5e-89 332.4 910 30.3
QL03p063806 Quercus lobata HOM05D000005 ORTHO05D000012 6.1e-87 326.2 299 67.2
Haze_17813 Corylus avellana HOM05D000005 ORTHO05D010574 2.9e-81 307.4 692 33.2
Haze_17817 Corylus avellana HOM05D000005 ORTHO05D010574 1.2e-79 302.0 835 28.4
Cfa018270 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.6e-79 300.4 746 29.6
Haze_17828 Corylus avellana HOM05D000005 ORTHO05D010574 4.0e-78 297.0 685 31.5
Haze_17818 Corylus avellana HOM05D000005 ORTHO05D010574 2.2e-73 281.2 672 31.2
Cfa018268 Carpinus fangiana HOM05D000005 ORTHO05D010574 9.4e-72 275.8 685 30.7
QL05p082212 Quercus lobata HOM05D000005 ORTHO05D010574 2.2e-68 264.6 877 27.3
MD12G1068700 Malus domestica HOM05D000005 ORTHO05D010574 5.4e-67 260.0 679 30.9
Haze_17730 Corylus avellana HOM05D000005 ORTHO05D010574 4.5e-66 256.9 821 27.6
Prupe.7G065400 Prunus persica HOM05D000005 ORTHO05D000012 1.5e-64 251.9 713 28.3
CANSAT01G0874 Cannabis sativa HOM05D000005 ORTHO05D000012 3.2e-64 250.8 738 29.7
QL09p003167 Quercus lobata HOM05D000005 ORTHO05D010574 3.2e-64 250.8 750 28.7
QL09p004694 Quercus lobata HOM05D000005 ORTHO05D010574 6.8e-62 243.0 713 29.7
Haze_17819 Corylus avellana HOM05D000005 ORTHO05D010574 7.0e-59 233.0 729 30.0
Haze_24261 Corylus avellana HOM05D000005 ORTHO05D010574 2.5e-56 224.6 495 33.7
QL09p003267 Quercus lobata HOM05D000005 ORTHO05D010574 5.7e-53 213.4 655 27.5
Cfa018269 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.6e-50 205.3 284 41.9
RcHm_v2.0_Chr4g0429711 Rosa chinensis HOM05D000005 ORTHO05D010574 3.9e-49 200.7 401 34.2
QL04p027965 Quercus lobata HOM05D000005 ORTHO05D010574 1.1e-48 199.1 325 37.8
QL09p004668 Quercus lobata HOM05D000005 ORTHO05D010574 3.3e-48 197.6 398 34.2
Cfa011658 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.2e-45 189.1 162 57.4
Cfa011655 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.0e-45 188.3 208 49.5
RcHm_v2.0_Chr1g0317981 Rosa chinensis HOM05D000005 ORTHO05D010574 1.3e-44 185.7 628 27.9
CiPaw.16G076400 Carya illinoinensis HOM05D000005 ORTHO05D010574 3.3e-40 171.0 277 38.6
CANSAT78G1597 Cannabis sativa HOM05D000005 ORTHO05D010574 1.2e-39 169.1 444 30.0
RcHm_v2.0_Chr6g0251631 Rosa chinensis HOM05D000005 ORTHO05D012233 4.0e-38 164.1 709 23.6
QL09p003102 Quercus lobata HOM05D000005 ORTHO05D010574 6.0e-34 150.2 157 50.3
RcHm_v2.0_Chr6g0251641 Rosa chinensis HOM05D000005 ORTHO05D000012 7.3e-32 143.3 450 27.1
QL04p027745 Quercus lobata HOM05D000005 ORTHO05D010574 2.8e-31 141.4 293 31.7
Prupe.8G005400 Prunus persica HOM05D000005 ORTHO05D000012 8.1e-31 139.8 688 25.0
Cfa011657 Carpinus fangiana HOM05D000005 ORTHO05D010574 5.2e-30 137.1 208 40.9
Cfa012834 Carpinus fangiana HOM05D000005 ORTHO05D010574 4.4e-29 134.0 135 51.9
MD17G1192900 Malus domestica HOM05D000005 ORTHO05D000012 4.1e-27 127.5 682 24.3
QL04p027395 Quercus lobata HOM05D000083 ORTHO05D001732 1.2e-26 125.9 443 25.3
QL04p027198 Quercus lobata HOM05D000005 ORTHO05D010574 7.8e-26 123.2 373 27.9
CsaV3_5G039740 Cucumis sativus L. HOM05D000005 ORTHO05D014598 1.0e-25 122.9 436 27.1
CANSAT78G2183 Cannabis sativa HOM05D000005 ORTHO05D010574 1.7e-25 122.1 263 33.1
Cfa018271 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.3e-25 121.7 511 29.7
QL04p027572 Quercus lobata HOM05D000056 ORTHO05D000019 3.0e-25 121.3 445 25.4
QL01p010488 Quercus lobata HOM05D002140 ORTHO05D010574 1.5e-24 119.0 96 62.5
RcHm_v2.0_Chr2g0106511 Rosa chinensis HOM05D000005 ORTHO05D012233 3.3e-24 117.9 737 23.2
Sed0026450 Sechium edule HOM05D000005 ORTHO05D014598 2.1e-23 115.2 274 32.1
QL04p027067 Quercus lobata HOM05D000083 ORTHO05D001732 2.8e-23 114.8 445 24.5
FAN26G2122 Fragaria x ananassa HOM05D000005 ORTHO05D012233 4.7e-23 114.0 731 23.7
RcHm_v2.0_Chr2g0124621 Rosa chinensis HOM05D000005 ORTHO05D012233 1.4e-22 112.5 705 22.4
FvH4_2g02050 Fragaria vesca HOM05D000005 ORTHO05D000012 3.1e-22 111.3 672 23.4
CsaV3_5G039730 Cucumis sativus L. HOM05D000005 ORTHO05D014598 5.2e-22 110.5 284 27.5
ClCG08G001330 Citrullus lanatus HOM05D000005 ORTHO05D010574 4.4e-21 107.5 164 36.0
MD05G1002200 Malus domestica HOM05D000005 ORTHO05D010574 5.8e-21 107.1 404 24.0
MELO3C022148.2 Cucumis melo HOM05D000005 ORTHO05D014598 7.6e-21 106.7 274 30.7
RcHm_v2.0_Chr2g0106541 Rosa chinensis HOM05D000005 ORTHO05D012233 7.6e-21 106.7 168 37.5
FAN04G2194 Fragaria x ananassa HOM05D000005 ORTHO05D012870 1.3e-20 105.9 697 21.7
MELO3C022150.2 Cucumis melo HOM05D000005 ORTHO05D014598 2.9e-20 104.8 289 29.8
FvH4_1g16620 Fragaria vesca HOM05D000005 ORTHO05D012233 2.4e-19 101.7 165 37.0
Sed0009572 Sechium edule HOM05D000005 ORTHO05D014598 7.1e-19 100.1 268 29.5
FAN23G1303 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.2e-18 99.4 165 35.8
FAN26G1463 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.2e-18 99.4 168 36.9
FAN19G0622 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.6e-18 99.0 165 36.4
FAN18G3744 Fragaria x ananassa HOM05D000005 ORTHO05D012870 2.1e-18 98.6 674 21.7
FAN23G0394 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.5e-18 97.8 748 22.2
FAN19G0289 Fragaria x ananassa HOM05D000005 ORTHO05D012233 7.8e-18 96.7 168 36.3
FAN28G2233 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.0e-17 94.7 168 36.3
RcHm_v2.0_Chr3g0465111 Rosa chinensis HOM05D000005 ORTHO05D001748 1.1e-16 92.8 163 35.6
RcHm_v2.0_Chr6g0272741 Rosa chinensis HOM05D000005 ORTHO05D000012 1.5e-16 92.4 172 32.6
ClCG08G001340 Citrullus lanatus HOM05D000005 ORTHO05D014598 1.9e-16 92.0 332 25.6
FAN28G0065 Fragaria x ananassa HOM05D000005 ORTHO05D012233 4.3e-16 90.9 440 22.7
FAN28G1466 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.3e-15 89.4 775 20.6
Cfa018274 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.1e-14 84.7 68 58.8
QL04p028099 Quercus lobata HOM05D000005 ORTHO05D010574 4.5e-13 80.9 148 34.5
MD10G1006400 Malus domestica HOM05D000005 ORTHO05D000012 7.6e-13 80.1 153 31.4
RcHm_v2.0_Chr1g0342551 Rosa chinensis HOM05D000005 ORTHO05D010574 9.9e-13 79.7 476 21.4
FvH4_5g38500 Fragaria vesca HOM05D000005 ORTHO05D012870 2.2e-12 78.6 147 26.5
Eucgr.F01325 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.4e-12 77.0 145 31.7
MD10G1007300 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-11 76.3 153 30.7
RcHm_v2.0_Chr1g0322491 Rosa chinensis HOM05D000005 ORTHO05D000012 1.1e-11 76.3 252 28.6
RcHm_v2.0_Chr4g0429701 Rosa chinensis HOM05D000005 ORTHO05D000012 1.1e-11 76.3 489 22.1
QL04p027649 Quercus lobata HOM05D000005 ORTHO05D010574 1.4e-11 75.9 149 32.9
QL04p028127 Quercus lobata HOM05D000005 ORTHO05D010574 1.4e-11 75.9 286 26.2
ClCG08G001380 Citrullus lanatus HOM05D000005 ORTHO05D014598 2.4e-11 75.1 423 21.3
QL04p026662 Quercus lobata HOM05D000005 ORTHO05D000012 9.3e-11 73.2 337 23.1
QL04p027378 Quercus lobata HOM05D000005 ORTHO05D000012 9.3e-11 73.2 337 23.1
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 9.3e-11 73.2 253 29.2
Duzib268G0402 Durio zibethinus HOM05D000005 ORTHO05D000012 4.6e-10 70.9 172 29.1
RcHm_v2.0_Chr1g0322651 Rosa chinensis HOM05D000005 ORTHO05D000012 4.6e-10 70.9 253 28.1
RcHm_v2.0_Chr6g0250981 Rosa chinensis HOM05D000005 ORTHO05D000012 4.6e-10 70.9 132 32.6
FAN06G4743 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.0e-10 70.5 149 28.2
RcHm_v2.0_Chr1g0321301 Rosa chinensis HOM05D000005 ORTHO05D001748 6.0e-10 70.5 218 29.4
QL04p027246 Quercus lobata HOM05D000005 ORTHO05D000012 7.9e-10 70.1 151 33.1
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 7.9e-10 70.1 253 28.1
RcHm_v2.0_Chr1g0323501 Rosa chinensis HOM05D000005 ORTHO05D001748 7.9e-10 70.1 253 27.3
RcHm_v2.0_Chr7g0240641 Rosa chinensis HOM05D000005 ORTHO05D012870 1.0e-09 69.7 447 23.3
CANSAT78G1585 Cannabis sativa HOM05D000005 ORTHO05D000012 1.3e-09 69.3 217 26.3
ClCG08G001360 Citrullus lanatus HOM05D000005 ORTHO05D010574 1.8e-09 68.9 189 23.8
FvH4_1g22390 Fragaria vesca HOM05D000005 ORTHO05D000294 1.8e-09 68.9 150 31.3
RcHm_v2.0_Chr6g0250771 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-09 68.9 132 32.6
Duzib268G0652 Durio zibethinus HOM05D000005 ORTHO05D000012 3.0e-09 68.2 163 28.2
FAN19G2490 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-09 68.2 144 30.6
MD05G1002400 Malus domestica HOM05D000005 ORTHO05D012870 3.0e-09 68.2 144 30.6
RcHm_v2.0_Chr7g0223661 Rosa chinensis HOM05D000005 ORTHO05D000012 3.0e-09 68.2 152 28.9
QL04p027735 Quercus lobata HOM05D000005 ORTHO05D000012 5.1e-09 67.4 150 32.0
FvH4_5g38680 Fragaria vesca HOM05D000005 ORTHO05D000012 6.7e-09 67.0 148 29.7
RcHm_v2.0_Chr1g0322781 Rosa chinensis HOM05D000005 ORTHO05D000012 6.7e-09 67.0 199 28.1
FvH4_2g00570 Fragaria vesca HOM05D000005 ORTHO05D000012 1.1e-08 66.2 191 27.7
RcHm_v2.0_Chr1g0322421 Rosa chinensis HOM05D000005 ORTHO05D001748 1.5e-08 65.9 190 28.4
ClCG08G000600 Citrullus lanatus HOM05D000005 ORTHO05D014598 2.5e-08 65.1 80 36.2
FAN24G3397 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.5e-08 65.1 194 26.8
RcHm_v2.0_Chr1g0323161 Rosa chinensis HOM05D000005 ORTHO05D000012 2.5e-08 65.1 252 27.8
Gohir.D11G312500 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.3e-08 64.7 197 25.9
ClCG08G000610 Citrullus lanatus HOM05D000005 ORTHO05D014598 5.6e-08 63.9 201 27.4
FvH4_3g33030 Fragaria vesca HOM05D000005 ORTHO05D000012 7.4e-08 63.5 154 29.2
RcHm_v2.0_Chr1g0323761 Rosa chinensis HOM05D000005 ORTHO05D000012 7.4e-08 63.5 262 26.3
RcHm_v2.0_Chr6g0250551 Rosa chinensis HOM05D000005 ORTHO05D000012 7.4e-08 63.5 194 29.4
Duzib268G0170 Durio zibethinus HOM05D000005 ORTHO05D000012 9.6e-08 63.2 175 26.9
FAN04G0619 Fragaria x ananassa HOM05D000005 ORTHO05D001748 9.6e-08 63.2 148 27.7
FAN27G2200 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.6e-08 63.2 194 26.3
QL04p027557 Quercus lobata HOM05D000005 ORTHO05D000012 9.6e-08 63.2 156 32.7
RcHm_v2.0_Chr1g0322961 Rosa chinensis HOM05D000005 ORTHO05D000012 1.3e-07 62.8 253 26.9
FvH4_5g38760 Fragaria vesca HOM05D000005 ORTHO05D012870 1.6e-07 62.4 489 20.7
QL05p015380 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-07 62.4 207 26.6
RcHm_v2.0_Chr5g0060391 Rosa chinensis HOM05D000005 ORTHO05D010574 2.1e-07 62.0 152 30.9
RcHm_v2.0_Chr6g0250831 Rosa chinensis HOM05D000005 ORTHO05D000012 2.1e-07 62.0 163 28.8
RcHm_v2.0_Chr6g0250511 Rosa chinensis HOM05D000005 ORTHO05D000012 3.6e-07 61.2 163 28.8
FAN15G3532 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.8e-07 60.8 152 27.6
FAN18G3157 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.8e-07 60.8 146 31.5
RcHm_v2.0_Chr1g0319431 Rosa chinensis HOM05D000005 ORTHO05D001748 4.8e-07 60.8 190 26.8
RcHm_v2.0_Chr1g0322941 Rosa chinensis HOM05D000005 ORTHO05D000012 4.8e-07 60.8 196 25.0
TWI38G0566 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 4.8e-07 60.8 152 28.9
RcHm_v2.0_Chr6g0270371 Rosa chinensis HOM05D000005 ORTHO05D001748 8.1e-07 60.1 81 39.5
FAN04G1890 Fragaria x ananassa HOM05D000005 ORTHO05D012870 1.1e-06 59.7 164 26.8
RcHm_v2.0_Chr1g0323411 Rosa chinensis HOM05D000005 ORTHO05D001748 1.1e-06 59.7 206 28.6
MELO3C022152.2 Cucumis melo HOM05D000005 ORTHO05D014598 1.4e-06 59.3 195 24.1
MELO3C025516.2 Cucumis melo HOM05D000005 ORTHO05D014598 1.4e-06 59.3 132 28.8
FAN11G0630 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.4e-06 59.3 154 28.6
QL09p003516 Quercus lobata HOM05D000005 ORTHO05D000012 1.4e-06 59.3 219 26.5
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 1.4e-06 59.3 196 27.0
Gohir.D11G313100 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.8e-06 58.9 199 25.1
QL05p082177 Quercus lobata HOM05D000005 ORTHO05D000012 2.4e-06 58.5 185 28.1
Gohir.D11G312054 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.1e-06 58.2 198 28.8
QL04p027147 Quercus lobata HOM05D002442 ORTHO05D002670 3.1e-06 58.2 77 40.3
RcHm_v2.0_Chr6g0247331 Rosa chinensis HOM05D000005 ORTHO05D000012 3.1e-06 58.2 158 28.5
Gohir.D11G316300 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.0e-06 57.8 190 26.8
Prupe.8G046700 Prunus persica HOM05D000005 ORTHO05D000012 4.0e-06 57.8 151 26.5
RcHm_v2.0_Chr1g0322381 Rosa chinensis HOM05D000005 ORTHO05D000012 5.3e-06 57.4 150 29.3
arahy.Tifrunner.gnm1.ann1.T7TSKU Arachis hypogaea HOM05D000005 ORTHO05D000012 6.9e-06 57.0 196 23.0
FvH4_5g38600 Fragaria vesca HOM05D000005 ORTHO05D012870 6.9e-06 57.0 387 23.0
Gorai.007G322300 Gossypium raimondii HOM05D000005 ORTHO05D000012 6.9e-06 57.0 157 28.7
QL09p004911 Quercus lobata HOM05D000005 ORTHO05D000012 6.9e-06 57.0 229 24.0
arahy.Tifrunner.gnm1.ann1.4FG6XW Arachis hypogaea HOM05D000005 ORTHO05D000012 9.0e-06 56.6 195 24.6
CiPaw.16G015500 Carya illinoinensis HOM05D000005 ORTHO05D010574 9.0e-06 56.6 141 29.8
MELO3C022144.2 Cucumis melo HOM05D000005 ORTHO05D019022 9.0e-06 56.6 336 22.6


User provided reference genes

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