Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 1.9e-162 575.9 303 100.0
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 1.9e-162 575.9 303 100.0
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.6e-148 528.9 303 90.1
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 6.5e-147 524.2 303 89.4
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.5e-143 513.1 303 89.8
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 3.3e-143 511.9 303 89.4
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 5.0e-139 498.0 303 86.1
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 9.3e-138 493.8 303 84.8
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 5.1e-136 488.0 303 84.2
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 5.3e-133 478.0 303 82.8
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 1.2e-132 476.9 303 82.2
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 3.8e-131 471.9 303 81.8
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 5.0e-131 471.5 298 83.6
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 6.5e-131 471.1 301 82.4
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.4e-130 469.9 299 81.9
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.4e-130 469.9 303 81.5
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 3.2e-130 468.8 303 81.2
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 4.2e-130 468.4 303 80.5
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 4.2e-130 468.4 303 81.2
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 5.5e-130 468.0 303 80.2
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 9.4e-130 467.2 294 82.7
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 2.1e-129 466.1 301 81.4
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 4.6e-129 464.9 303 81.8
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 3.0e-128 462.2 303 79.5
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 3.0e-128 462.2 303 80.2
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.9e-128 461.8 303 79.5
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 8.8e-128 460.7 303 80.2
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 1.5e-127 459.9 303 79.9
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.3e-127 458.8 303 79.2
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.3e-127 458.8 303 78.5
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.3e-127 458.8 303 78.5
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.2e-126 456.1 294 82.0
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 3.7e-126 455.3 303 77.9
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 4.8e-126 454.9 304 78.9
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 6.3e-126 454.5 303 77.9
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 6.3e-126 454.5 297 82.2
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 1.8e-125 453.0 303 77.2
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.8e-125 453.0 303 80.2
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 3.1e-125 452.2 303 78.5
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 5.3e-125 451.4 304 78.3
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.0e-124 449.5 303 76.9
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.0e-124 449.5 303 76.9
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 2.0e-124 449.5 294 82.0
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 3.4e-124 448.7 303 77.2
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.3e-123 446.8 303 78.2
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 2.2e-123 446.0 303 77.2
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 3.8e-123 445.3 304 77.3
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 5.0e-123 444.9 303 76.6
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 6.5e-123 444.5 304 78.0
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 6.5e-123 444.5 299 79.6
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.5e-123 444.5 303 77.6
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 6.5e-123 444.5 296 78.7
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.5e-122 441.4 297 80.1
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 7.2e-122 441.0 294 78.2
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 1.2e-121 440.3 304 77.3
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.6e-121 439.9 304 77.6
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 2.1e-121 439.5 304 77.3
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 3.6e-121 438.7 307 77.2
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 4.7e-121 438.3 290 79.0
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 6.1e-121 438.0 309 76.7
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 6.1e-121 438.0 309 76.7
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.9e-121 437.6 303 73.9
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.0e-120 437.2 314 75.5
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.0e-120 437.2 303 76.6
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 5.2e-120 434.9 303 73.9
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 6.7e-120 434.5 303 74.9
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 8.8e-120 434.1 303 73.6
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.5e-119 433.3 299 74.6
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 2.6e-119 432.6 303 74.3
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 1.3e-118 430.3 303 72.9
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.3e-118 430.3 303 72.9
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 2.8e-118 429.1 303 72.9
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 2.8e-118 429.1 303 72.6
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 3.7e-118 428.7 303 74.3
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 4.8e-118 428.3 307 75.2
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 8.2e-118 427.6 303 72.6
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 4.1e-117 425.2 303 72.3
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 3.5e-116 422.2 305 74.8
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 5.9e-116 421.4 303 72.9
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.2e-114 415.6 280 80.7
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 3.2e-114 415.6 280 77.1
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 6.1e-113 411.4 304 72.7
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 8.0e-113 411.0 294 72.8
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.0e-112 410.6 304 73.0
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.0e-112 410.6 303 71.3
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 4.0e-112 408.7 303 73.9
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 5.2e-112 408.3 292 72.6
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 8.8e-112 407.5 303 69.6
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.3e-110 403.7 280 76.8
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 2.8e-110 402.5 298 71.8
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 6.3e-110 401.4 288 73.3
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 8.2e-110 401.0 303 71.6
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.8e-109 399.8 289 73.0
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 2.4e-109 399.4 297 72.4
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.4e-109 399.4 280 78.2
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 7.2e-106 387.9 293 68.6
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 9.4e-106 387.5 303 64.7
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 1.4e-104 383.6 302 65.6
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.3e-104 382.9 299 65.9
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 6.3e-102 374.8 297 65.0
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 6.3e-102 374.8 301 63.8
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 6.3e-102 374.8 295 67.5
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.2e-97 360.5 273 71.8
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 7.5e-95 351.3 289 63.7
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 4.9e-94 348.6 280 64.6
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 6.3e-94 348.2 295 67.5
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 1.1e-90 337.4 283 64.3
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.1e-85 320.9 229 76.0
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.5e-82 310.5 194 85.1
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.7e-78 297.0 306 53.9
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.8e-76 288.1 201 77.6
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.7e-67 260.4 177 75.1
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 3.9e-67 259.2 295 49.8
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 4.7e-65 252.3 158 84.2
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 4.1e-61 239.2 291 47.8
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 1.0e-59 234.6 195 63.6
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.5e-58 230.7 138 88.4
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 9.6e-58 228.0 337 43.9
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 8.1e-57 224.9 292 49.3
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 4.0e-56 222.6 194 59.3
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 1.3e-49 201.1 237 55.3
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 4.8e-49 199.1 142 71.8
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 1.8e-40 170.6 211 48.8
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 5.8e-39 165.6 185 55.1
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 2.2e-38 163.7 115 78.3
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 5.1e-35 152.5 290 39.0
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 6.7e-35 152.1 111 71.2
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 5.6e-34 149.1 183 45.4
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.6e-33 147.5 99 73.7
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.9e-30 136.7 98 77.6
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 7.6e-23 112.1 86 68.6
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.8e-19 100.9 85 72.9
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 1.5e-18 97.8 59 81.4
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 5.7e-18 95.9 303 30.0
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 4.8e-17 92.8 282 29.8
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 4.5e-15 86.3 54 72.2
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 3.8e-14 83.2 48 79.2
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.1e-13 81.6 176 36.4
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.1e-13 81.6 149 40.3
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 9.7e-10 68.6 194 30.9


User provided reference genes

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