Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 5.9e-158 560.8 289 100.0
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 2.0e-153 545.8 288 97.2
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 2.2e-120 436.0 288 79.5
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 1.9e-103 379.8 294 69.4
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 4.6e-102 375.2 232 83.2
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 4.3e-100 368.6 286 68.2
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 4.5e-97 358.6 290 66.6
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 5.5e-95 351.7 292 65.4
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 5.1e-93 345.1 281 65.5
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 5.7e-92 341.7 290 63.8
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 9.7e-92 340.9 288 63.9
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 1.3e-91 340.5 294 63.3
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.6e-91 340.1 291 62.9
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.6e-91 340.1 288 63.5
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 3.1e-90 335.9 292 62.7
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.9e-90 334.7 277 64.3
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 5.9e-89 331.6 279 63.1
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.2e-88 329.7 304 60.2
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 2.2e-88 329.7 243 68.7
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 3.8e-88 328.9 281 62.6
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 5.0e-88 328.6 272 63.2
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.5e-88 327.8 271 64.6
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 9.4e-87 324.3 273 65.9
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 9.4e-87 324.3 231 70.1
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 4.6e-86 322.0 284 62.3
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 6.1e-86 321.6 297 57.9
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.0e-85 320.9 271 63.1
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 2.3e-85 319.7 288 59.7
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 8.8e-85 317.8 248 66.9
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 3.3e-84 315.8 266 62.8
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 5.7e-84 315.1 250 64.4
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 7.4e-84 314.7 267 63.3
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 1.7e-83 313.5 255 64.3
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 2.8e-83 312.8 249 64.3
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 3.7e-83 312.4 249 63.9
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 4.8e-83 312.0 240 64.6
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.4e-82 310.5 240 64.6
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 2.4e-82 309.7 252 64.3
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 5.3e-82 308.5 276 60.1
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 5.3e-82 308.5 238 66.4
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 6.9e-82 308.1 287 58.9
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 6.9e-82 308.1 235 66.4
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 9.1e-82 307.8 251 61.8
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.2e-81 307.4 299 58.2
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.2e-81 307.4 266 61.3
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 2.0e-81 306.6 290 55.5
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 2.6e-81 306.2 239 65.3
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 2.6e-81 306.2 320 53.1
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 3.4e-81 305.8 272 60.7
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 4.5e-81 305.4 297 58.2
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.5e-81 305.4 294 56.8
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.5e-81 305.4 260 60.4
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 4.5e-81 305.4 244 64.3
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 7.7e-81 304.7 259 61.8
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 7.7e-81 304.7 243 62.6
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 7.7e-81 304.7 235 66.0
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.3e-80 303.9 244 63.9
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.7e-80 303.5 270 59.3
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 2.2e-80 303.1 329 51.7
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 2.9e-80 302.8 239 63.6
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 2.9e-80 302.8 285 57.2
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.9e-80 302.8 239 64.9
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 8.5e-80 301.2 249 61.4
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.5e-80 301.2 331 53.8
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 1.1e-79 300.8 242 64.9
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 1.1e-79 300.8 230 63.9
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 1.4e-79 300.4 249 61.0
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 1.9e-79 300.1 250 59.6
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 1.9e-79 300.1 296 56.4
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 4.2e-79 298.9 236 62.3
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 9.4e-79 297.7 243 61.3
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 9.4e-79 297.7 249 60.2
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 9.4e-79 297.7 235 66.0
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 9.4e-79 297.7 279 57.3
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 1.2e-78 297.4 249 60.6
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 1.2e-78 297.4 257 58.8
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.6e-78 297.0 309 53.1
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 1.6e-78 297.0 234 65.0
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 1.6e-78 297.0 257 57.2
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 2.1e-78 296.6 243 61.3
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 2.7e-78 296.2 225 64.9
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 4.7e-78 295.4 239 60.3
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.8e-77 293.5 295 56.9
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 3.0e-77 292.7 245 60.0
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 3.0e-77 292.7 252 57.9
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 6.7e-77 291.6 235 60.4
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 1.1e-76 290.8 305 53.8
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.3e-76 289.3 229 62.9
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 7.4e-76 288.1 263 58.2
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 7.4e-76 288.1 303 54.1
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 9.7e-76 287.7 247 63.6
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 9.7e-76 287.7 241 60.2
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 2.2e-75 286.6 233 59.7
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 2.2e-75 286.6 248 58.1
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 2.2e-75 286.6 273 54.6
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 8.2e-75 284.6 270 54.8
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 8.2e-75 284.6 235 62.1
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 1.1e-74 284.3 259 57.9
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.4e-74 283.1 269 55.4
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 9.1e-74 281.2 214 65.9
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.2e-73 280.8 223 63.2
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.5e-73 280.4 263 57.0
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.5e-73 279.3 320 50.6
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.5e-73 279.3 292 52.4
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 4.5e-73 278.9 234 60.7
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 7.7e-73 278.1 277 56.3
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 1.7e-72 276.9 247 59.9
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 1.7e-72 276.9 222 64.0
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 2.2e-72 276.6 283 53.4
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 2.5e-71 273.1 272 54.8
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 3.2e-71 272.7 197 70.1
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 1.4e-69 267.3 215 63.3
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.3e-69 266.5 280 53.6
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 8.2e-67 258.1 237 59.1
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.4e-66 256.5 245 54.7
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 4.2e-63 245.7 220 57.3
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.6e-62 243.8 238 57.1
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 2.1e-62 243.4 195 62.6
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 1.0e-61 241.1 221 56.6
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 1.2e-60 237.7 146 80.1
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 7.5e-60 235.0 279 46.6
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.3e-59 234.2 239 55.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 3.5e-57 226.1 228 53.9
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 1.7e-56 223.8 147 75.5
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 3.8e-56 222.6 214 55.1
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.5e-55 220.7 143 73.4
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.9e-55 220.3 196 58.7
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.2e-54 217.6 223 52.5
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.4e-53 214.2 146 73.3
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.5e-52 210.7 161 64.6
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 1.5e-52 210.7 144 71.5
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 3.4e-52 209.5 148 70.3
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.1e-50 204.5 270 46.7
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 4.1e-50 202.6 286 43.4
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 2.7e-41 173.3 226 42.0
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.0e-40 171.4 174 51.1
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.0e-40 169.1 170 53.5
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.2e-38 164.5 129 65.9
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 2.3e-37 160.2 136 58.8
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 6.8e-37 158.7 153 53.6
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 5.8e-36 155.6 96 77.1
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.3e-35 154.5 174 54.6
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 4.0e-29 132.9 206 38.8
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 6.8e-29 132.1 139 57.6
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 4.6e-25 119.4 96 62.5
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 3.6e-22 109.8 238 33.6
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 5.2e-21 105.9 234 31.2
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 3.4e-20 103.2 106 54.7
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.8e-20 102.4 106 54.7
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 1.9e-18 97.4 100 54.0


User provided reference genes

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