Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 7.8e-158 560.5 289 100.0
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 2.0e-153 545.8 288 97.2
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 3.6e-123 445.3 289 80.6
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 2.0e-105 386.3 293 70.0
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.1e-100 370.5 286 68.9
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.9e-100 369.8 234 81.6
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 2.6e-97 359.4 290 66.9
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.6e-94 350.1 292 64.7
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 2.3e-93 346.3 281 66.2
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 3.9e-93 345.5 294 64.3
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.3e-92 342.4 288 64.6
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 3.3e-92 342.4 290 64.8
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 5.7e-92 341.7 288 64.9
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 9.7e-92 340.9 292 63.7
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.7e-91 339.0 291 63.6
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.3e-91 338.2 276 64.5
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.1e-90 335.5 304 61.2
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 3.4e-89 332.4 280 62.9
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 5.9e-89 331.6 278 63.7
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.7e-89 331.3 271 64.6
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 8.5e-88 327.8 242 68.2
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.5e-87 326.2 272 63.2
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 7.2e-87 324.7 230 71.3
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 9.4e-87 324.3 274 66.1
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.4e-87 324.3 271 63.1
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 4.6e-86 322.0 287 60.3
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 7.9e-86 321.2 283 61.8
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 1.0e-85 320.9 247 67.6
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 8.8e-85 317.8 295 58.3
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 2.0e-84 316.6 250 64.8
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 3.3e-84 315.8 265 63.8
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 9.7e-84 314.3 266 63.5
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 9.7e-84 314.3 249 64.7
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 1.3e-83 313.9 297 59.9
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 1.3e-83 313.9 249 64.3
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 1.7e-83 313.5 240 65.0
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 2.8e-83 312.8 255 64.3
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 1.1e-82 310.8 275 60.7
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 4.1e-82 308.9 252 64.3
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 4.1e-82 308.9 251 61.8
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 5.3e-82 308.5 240 64.6
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 6.9e-82 308.1 239 65.7
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 9.1e-82 307.8 280 59.3
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 9.1e-82 307.8 289 60.9
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.1e-82 307.8 294 57.1
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 1.2e-81 307.4 235 66.8
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 1.2e-81 307.4 272 61.0
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 2.0e-81 306.6 289 56.4
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.0e-81 306.6 243 64.6
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 2.0e-81 306.6 237 66.2
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.6e-81 306.2 331 54.7
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.6e-81 306.2 260 60.8
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 3.4e-81 305.8 265 61.9
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 5.9e-81 305.1 259 62.2
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 5.9e-81 305.1 243 63.8
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.3e-80 303.9 238 64.7
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 1.7e-80 303.5 235 65.5
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 2.2e-80 303.1 284 58.5
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 2.2e-80 303.1 242 62.8
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 3.8e-80 302.4 249 61.8
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 6.5e-80 301.6 249 61.4
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 6.5e-80 301.6 315 53.7
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 1.4e-79 300.4 238 63.9
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.4e-79 300.4 269 58.4
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 2.5e-79 299.7 242 62.4
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 2.5e-79 299.7 292 56.5
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 3.2e-79 299.3 289 56.7
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 3.2e-79 299.3 256 59.8
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 4.2e-79 298.9 249 60.6
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.2e-79 298.9 295 58.0
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 5.5e-79 298.5 249 59.8
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 5.5e-79 298.5 249 61.0
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 5.5e-79 298.5 329 51.4
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 7.2e-79 298.1 225 66.2
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 7.2e-79 298.1 233 64.8
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 7.2e-79 298.1 256 57.8
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.2e-78 297.4 236 62.3
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.2e-78 297.4 235 66.4
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 2.1e-78 296.6 242 61.2
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 2.1e-78 296.6 272 57.7
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 4.7e-78 295.4 254 61.4
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 7.9e-78 294.7 309 53.4
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 2.3e-77 293.1 245 59.6
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 3.9e-77 292.4 238 60.1
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 3.9e-77 292.4 235 60.9
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 5.1e-77 292.0 229 63.3
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 5.1e-77 292.0 247 64.8
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 6.7e-77 291.6 304 54.3
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 8.8e-77 291.2 252 57.9
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 2.0e-76 290.0 241 61.4
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 3.3e-76 289.3 281 56.6
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 9.7e-76 287.7 248 58.5
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 9.7e-76 287.7 272 55.1
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.3e-75 287.3 233 60.1
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 2.2e-75 286.6 234 62.8
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 2.8e-75 286.2 270 55.2
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 6.3e-75 285.0 268 56.0
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 6.3e-75 285.0 263 57.8
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 2.4e-74 283.1 214 65.4
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.1e-74 282.3 263 57.4
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 9.1e-74 281.2 277 56.7
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 9.1e-74 281.2 259 57.5
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.7e-73 278.1 318 50.3
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.3e-72 277.3 283 53.4
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 2.2e-72 276.6 246 60.2
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.9e-72 276.2 233 60.1
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 5.0e-72 275.4 272 55.1
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 5.0e-72 275.4 290 51.7
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.4e-71 273.9 222 61.7
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 7.2e-71 271.6 221 62.9
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.7e-70 269.6 279 54.8
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 2.7e-70 269.6 197 68.5
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 4.7e-70 268.9 215 63.7
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 3.7e-67 259.2 236 58.9
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 6.3e-67 258.5 244 55.3
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.8e-64 249.2 220 57.7
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 3.2e-63 246.1 238 57.6
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 4.7e-62 242.3 195 62.6
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 5.2e-61 238.8 221 57.0
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 8.8e-61 238.0 146 80.8
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 3.4e-60 236.1 279 47.0
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.2e-59 233.4 238 55.9
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 1.7e-56 223.8 147 76.2
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 6.5e-56 221.9 224 54.0
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.9e-55 220.3 196 59.2
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.5e-55 219.9 143 73.4
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 1.6e-54 217.2 214 53.3
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 8.0e-54 214.9 145 73.1
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.4e-53 214.2 223 52.0
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 2.6e-52 209.9 148 70.9
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.4e-52 209.5 161 64.0
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 3.4e-52 209.5 144 71.5
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.2e-51 206.8 270 47.8
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 5.4e-50 202.2 287 43.2
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 3.5e-41 172.9 226 42.0
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.7e-40 170.6 170 54.7
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 2.9e-40 169.9 174 51.1
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 7.3e-39 165.2 129 65.9
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.0e-37 161.4 136 59.6
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 2.0e-36 157.1 153 53.6
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.8e-36 155.6 174 55.2
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 4.9e-35 152.5 96 75.0
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 5.2e-29 132.5 206 39.3
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 6.8e-29 132.1 139 57.6
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.0e-24 118.2 95 63.2
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.4e-21 107.8 238 33.2
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 3.4e-20 103.2 106 54.7
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.4e-20 102.8 106 54.7
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 4.4e-20 102.8 234 31.2
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 1.9e-18 97.4 100 54.0


User provided reference genes

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