Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 4.0e-114 414.8 217 100.0
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 7.1e-71 271.2 218 68.8
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.1e-66 257.3 217 63.1
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.3e-64 250.4 211 65.9
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 2.4e-63 246.1 217 61.3
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 8.6e-61 237.7 213 59.2
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 2.8e-59 232.6 213 58.2
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 1.1e-58 230.7 228 57.9
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 1.3e-56 223.8 214 56.1
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 8.4e-56 221.1 211 55.5
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 1.6e-54 216.9 225 53.8
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 1.3e-53 213.8 197 58.4
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 3.9e-53 212.2 215 55.3
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 5.1e-53 211.8 180 62.2
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 8.7e-53 211.1 211 54.0
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 8.7e-53 211.1 212 55.7
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.1e-52 210.7 189 57.7
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 1.9e-52 209.9 181 60.2
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 1.9e-52 209.9 215 54.0
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 2.5e-52 209.5 181 61.9
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 7.3e-52 208.0 214 55.1
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 4.8e-51 205.3 188 58.5
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 8.1e-51 204.5 223 53.8
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 6.9e-50 201.4 210 59.0
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 5.8e-49 198.4 185 57.3
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 9.9e-49 197.6 181 59.1
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 1.7e-48 196.8 215 50.7
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 2.9e-48 196.1 181 58.6
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 4.9e-48 195.3 181 55.8
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 4.9e-48 195.3 212 53.3
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 6.4e-48 194.9 225 48.4
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 8.4e-48 194.5 219 52.1
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 1.4e-47 193.7 212 51.4
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.4e-47 193.7 212 51.4
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 1.9e-47 193.4 213 50.2
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 4.2e-47 192.2 219 48.9
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 5.4e-47 191.8 210 51.4
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 7.1e-47 191.4 212 48.1
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.2e-46 190.7 188 54.3
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 2.1e-46 189.9 217 53.5
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.7e-46 189.5 187 54.0
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.7e-46 189.5 188 53.7
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 3.5e-46 189.1 184 56.0
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 4.6e-46 188.7 210 50.5
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 7.9e-46 188.0 223 48.9
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 7.9e-46 188.0 217 47.9
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 1.0e-45 187.6 210 50.5
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 3.0e-45 186.0 183 53.6
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 5.1e-45 185.3 217 47.0
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 1.9e-44 183.3 175 57.1
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 1.9e-44 183.3 212 51.4
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 2.5e-44 183.0 210 48.6
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.3e-43 180.6 185 54.1
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 2.8e-43 179.5 182 52.2
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 3.6e-43 179.1 214 47.7
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 8.1e-43 177.9 226 44.7
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 1.1e-42 177.6 181 50.8
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 4.0e-42 175.6 219 49.8
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 6.9e-42 174.9 221 46.6
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 7.6e-41 171.4 181 50.3
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.3e-40 170.6 218 45.4
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.3e-40 170.6 216 44.0
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 1.3e-40 170.6 175 53.7
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 3.8e-40 169.1 207 47.3
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 8.4e-40 167.9 219 44.7
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 2.4e-39 166.4 183 50.3
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 2.1e-38 163.3 213 44.6
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 3.5e-38 162.5 235 43.0
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 4.6e-38 162.2 144 58.3
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 7.9e-38 161.4 179 48.6
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 7.9e-38 161.4 206 45.6
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 1.8e-37 160.2 191 50.3
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 1.9e-36 156.8 189 44.4
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 2.5e-36 156.4 211 44.1
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 2.1e-35 153.3 213 44.6
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 2.1e-35 153.3 215 41.9
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 2.8e-35 152.9 179 50.8
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 8.1e-35 151.4 143 57.3
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 1.1e-34 151.0 211 46.9
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 2.4e-34 149.8 214 41.1
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 1.5e-33 147.1 178 45.5
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 2.6e-33 146.4 194 44.8
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 3.4e-33 146.0 193 47.2
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 4.5e-33 145.6 215 43.7
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 4.5e-33 145.6 185 45.4
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 5.8e-33 145.2 216 41.2
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 7.6e-33 144.8 297 37.4
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 2.2e-32 143.3 144 59.0
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 6.0e-30 135.2 153 48.4
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 1.3e-29 134.0 158 44.9
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 3.0e-29 132.9 180 44.4
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 1.1e-28 131.0 177 46.3
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 9.6e-28 127.9 176 42.6
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 1.1e-26 124.4 168 45.2
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 3.1e-26 122.9 182 41.2
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 4.1e-26 122.5 175 45.1
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 6.9e-26 121.7 181 40.9
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 1.5e-25 120.6 150 50.0
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 8.5e-24 114.8 145 45.5
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 2.7e-22 109.8 208 38.0
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 3.9e-21 105.9 157 40.8
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 1.1e-20 104.4 173 34.7
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 5.0e-16 89.0 167 34.7
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 1.9e-15 87.0 119 39.5
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 3.2e-15 86.3 108 49.1
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.2e-11 73.6 82 51.2
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 4.8e-11 72.4 75 48.0
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 4.8e-11 72.4 75 48.0
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 1.3e-08 64.3 126 32.5
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 2.5e-07 60.1 143 32.9
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 2.7e-06 56.6 88 35.2
Sabra08G0145200 Salix brachista HOM05D007009 ORTHO05D008451 7.9e-06 55.1 86 47.7


User provided reference genes

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