Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 2.7e-235 818.1 376 100.0
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 6.9e-191 670.6 376 81.4
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 7.7e-174 614.0 348 82.5
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.1e-172 610.1 377 73.7
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.1e-171 605.9 376 71.8
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 2.3e-170 602.4 377 73.7
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 5.2e-170 601.3 376 72.6
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 8.8e-170 600.5 376 72.1
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.3e-168 596.7 376 72.3
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 7.0e-167 590.9 379 73.1
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.7e-165 586.3 377 71.6
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.9e-165 585.5 379 71.5
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.8e-162 576.2 377 70.0
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.8e-162 576.2 385 70.1
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.8e-162 576.2 384 69.8
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 8.8e-162 573.9 385 70.4
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.5e-161 573.2 378 70.6
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.8e-160 568.9 377 70.0
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 9.1e-159 563.9 361 70.6
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.5e-158 562.0 384 69.0
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 3.8e-157 558.5 377 67.4
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.5e-156 556.6 404 61.1
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.1e-155 552.7 377 66.8
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 6.8e-154 547.7 378 68.8
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 1.2e-153 547.0 376 65.2
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.5e-153 546.6 405 64.2
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 4.4e-153 545.0 347 71.5
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.7e-152 543.1 376 65.7
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 3.1e-151 538.9 379 64.1
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 3.5e-150 535.4 377 63.9
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 7.7e-150 534.3 376 64.4
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.7e-149 533.1 380 64.5
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 5.0e-149 531.6 399 63.2
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.1e-148 530.4 376 65.2
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 9.5e-148 527.3 377 63.1
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 2.1e-147 526.2 377 63.7
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 8.0e-147 524.2 376 64.1
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 2.3e-146 522.7 379 62.8
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 5.2e-146 521.5 376 61.7
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.5e-145 520.0 379 62.0
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 2.0e-145 519.6 381 63.0
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.0e-145 519.6 376 62.8
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 2.6e-145 519.2 393 62.8
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 3.4e-145 518.8 398 59.3
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 3.4e-145 518.8 379 61.7
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 4.4e-145 518.5 381 62.7
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 4.4e-145 518.5 380 62.6
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 4.4e-145 518.5 380 62.6
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 5.7e-145 518.1 376 61.7
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 1.7e-144 516.5 379 63.1
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 4.9e-144 515.0 376 62.8
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.4e-143 513.5 380 62.9
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.4e-143 512.7 376 64.1
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 5.4e-143 511.5 376 62.2
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.2e-142 510.4 376 61.2
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 2.7e-142 509.2 377 60.7
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.0e-141 507.3 376 60.6
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 2.9e-141 505.8 375 61.1
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 2.9e-141 505.8 377 61.0
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 4.3e-140 501.9 347 63.7
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 4.3e-140 501.9 381 61.2
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 9.5e-140 500.7 376 62.5
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.6e-139 500.0 467 52.5
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 8.0e-139 497.7 343 65.9
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.0e-138 497.3 376 62.0
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 2.3e-138 496.1 383 61.4
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 8.9e-138 494.2 359 61.6
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 6.4e-136 488.0 376 59.0
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 8.3e-136 487.6 377 58.9
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 6.0e-134 481.5 375 60.3
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 8.1e-131 471.1 419 52.7
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 2.6e-129 466.1 361 58.4
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 2.2e-128 463.0 321 67.0
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 2.2e-128 463.0 376 57.4
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.9e-128 461.8 377 57.3
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.4e-127 460.3 376 56.9
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 4.6e-126 455.3 379 54.4
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.0e-125 454.1 376 54.0
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.0e-125 454.1 315 67.6
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 2.1e-123 446.4 386 56.0
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 6.4e-120 434.9 308 61.4
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.1e-116 424.1 351 57.3
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 1.5e-116 423.7 296 65.5
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.9e-116 423.3 333 58.0
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 6.8e-114 414.8 382 54.7
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.3e-108 395.6 249 74.3
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 7.1e-103 378.3 380 47.1
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.4e-98 364.0 287 59.9
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.1e-98 362.8 392 46.9
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 3.8e-96 355.9 377 45.1
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 7.1e-95 351.7 389 46.3
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 9.6e-92 341.3 396 44.2
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 2.1e-91 340.1 302 54.6
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.1e-90 337.8 266 60.2
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 2.9e-88 329.7 376 45.5
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 7.9e-86 321.6 379 42.2
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.0e-80 304.7 358 42.7
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.7e-80 303.9 338 45.0
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.8e-75 286.6 307 48.2
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 9.7e-68 261.5 215 56.3
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 7.7e-49 198.7 301 37.5
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.5e-44 184.5 113 77.0
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.0e-40 171.8 369 32.2
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.3e-40 171.4 369 32.2
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.3e-40 171.4 369 32.2
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.2e-40 170.6 369 31.4
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 2.2e-40 170.6 369 32.2
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 3.8e-40 169.9 371 30.5
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.0e-40 169.5 373 30.8
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 5.0e-40 169.5 369 32.0
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.5e-39 167.9 372 30.4
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 3.2e-39 166.8 382 31.2
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 5.5e-39 166.0 373 30.3
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.2e-38 164.9 371 30.5
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 1.2e-38 164.9 378 31.2
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.6e-38 164.5 373 31.4
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 1.6e-38 164.5 371 31.5
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 2.7e-38 163.7 370 30.3
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 2.7e-38 163.7 371 31.3
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 4.7e-38 162.9 372 29.0
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.0e-37 161.8 369 31.2
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 1.8e-37 161.0 369 31.2
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.3e-37 160.6 371 30.7
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 2.3e-37 160.6 371 30.7
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 2.3e-37 160.6 371 30.7
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 3.0e-37 160.2 371 30.2
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 8.8e-37 158.7 371 30.7
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 8.8e-37 158.7 377 31.6
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.2e-36 158.3 373 30.6
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 1.5e-36 157.9 373 31.4
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.5e-36 157.9 367 30.5
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.5e-36 157.9 371 32.6
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 2.0e-36 157.5 371 30.7
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 2.0e-36 157.5 371 30.7
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.0e-36 157.5 371 30.5
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 3.4e-36 156.8 350 31.1
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 4.4e-36 156.4 371 30.5
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 4.4e-36 156.4 371 30.5
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 5.7e-36 156.0 372 30.6
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 7.5e-36 155.6 176 46.6
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 7.5e-36 155.6 378 30.4
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 1.3e-35 154.8 370 29.2
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 1.3e-35 154.8 370 29.2
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.3e-35 154.8 372 31.5
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 1.7e-35 154.5 369 31.2
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 2.2e-35 154.1 371 30.7
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 3.7e-35 153.3 372 30.4
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 3.7e-35 153.3 372 29.0
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 4.9e-35 152.9 372 29.3
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 6.3e-35 152.5 373 30.3
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 1.1e-34 151.8 363 29.8
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 1.1e-34 151.8 376 29.5
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.4e-34 151.4 375 28.5
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.4e-34 151.4 372 29.8
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 2.4e-34 150.6 376 29.5
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.2e-33 148.3 152 46.7
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 2.0e-33 147.5 369 29.5
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 5.9e-33 146.0 372 28.8
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 1.7e-32 144.4 370 29.5
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 2.9e-32 143.7 375 29.1
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 1.9e-31 141.0 371 27.8
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.6e-31 139.4 193 40.4
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 4.4e-28 129.8 86 73.3
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.3e-27 128.3 371 26.1
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.4e-26 124.0 131 45.0
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 3.2e-26 123.6 244 32.0
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 9.2e-26 122.1 440 26.6
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.0e-24 118.6 371 27.5
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 8.0e-22 109.0 295 30.8
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 4.0e-21 106.7 70 65.7
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 6.8e-21 105.9 73 65.8
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 4.4e-20 103.2 119 44.5
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 4.9e-19 99.8 82 52.4
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 6.4e-19 99.4 105 46.7
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 7.8e-17 92.4 197 31.0
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 8.6e-16 89.0 62 58.1
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 5.6e-15 86.3 63 58.7
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 6.8e-13 79.3 118 40.7
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 4.4e-12 76.6 193 26.4
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 6.4e-11 72.8 71 53.5
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 1.9e-10 71.2 56 53.6
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 3.0e-08 63.9 50 60.0
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 2.5e-07 60.8 35 71.4
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 5.6e-07 59.7 38 68.4


User provided reference genes

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