Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p065997 Quercus lobata HOM05D009398 ORTHO05D011511 1.4e-256 889.0 437 100.0
QL03p066121 Quercus lobata HOM05D009398 ORTHO05D011511 9.3e-256 886.3 437 99.8
QL03p062579 Quercus lobata HOM05D037156 ORTHO05D011511 9.9e-40 168.7 405 36.0
QL03p068360 Quercus lobata HOM05D037156 ORTHO05D011511 1.3e-39 168.3 375 34.7
Haze_12327 Corylus avellana HOM05D009398 ORTHO05D011511 3.5e-29 133.7 340 30.0
QL03p066111 Quercus lobata HOM05D009398 ORTHO05D011511 7.4e-27 125.9 458 33.0
Haze_12398 Corylus avellana HOM05D009398 ORTHO05D011511 1.3e-26 125.2 345 30.4
Cfa009056 Carpinus fangiana HOM05D009398 ORTHO05D011511 4.8e-26 123.2 417 28.8
Cfa005300 Carpinus fangiana HOM05D009398 ORTHO05D011511 5.9e-24 116.3 306 31.7
Haze_12354 Corylus avellana HOM05D009398 ORTHO05D011511 2.2e-23 114.4 191 36.1
Cfa009419 Carpinus fangiana HOM05D009398 ORTHO05D011511 8.4e-23 112.5 365 27.9
Haze_12353 Corylus avellana HOM05D009398 ORTHO05D011511 2.7e-21 107.5 378 27.2
Cfa009350 Carpinus fangiana HOM05D009398 ORTHO05D011511 6.1e-21 106.3 331 27.8
Cfa008807 Carpinus fangiana HOM05D009398 ORTHO05D011511 5.1e-20 103.2 375 27.5
Haze_12403 Corylus avellana HOM05D009398 ORTHO05D011511 5.7e-19 99.8 381 28.3
Dinv16557 Davidia involucrata HOM05D000007 ORTHO05D009073 7.4e-19 99.4 362 26.8
QL03p062618 Quercus lobata HOM05D009398 ORTHO05D009073 1.3e-18 98.6 297 28.6
Cfa008760 Carpinus fangiana HOM05D009398 ORTHO05D011511 4.8e-18 96.7 176 35.8
Haze_11821 Corylus avellana HOM05D009398 ORTHO05D011511 4.8e-18 96.7 358 26.5
QL03p062572 Quercus lobata HOM05D009398 ORTHO05D011511 4.8e-18 96.7 302 28.8
QL03p068470 Quercus lobata HOM05D009398 ORTHO05D011511 1.5e-16 91.7 313 28.8
Cfa009296 Carpinus fangiana HOM05D009398 ORTHO05D011511 3.4e-16 90.5 293 28.3
Prupe.1G333100 Prunus persica HOM05D000007 ORTHO05D009073 4.5e-16 90.1 351 27.6
Haze_12406 Corylus avellana HOM05D009398 ORTHO05D011511 7.7e-16 89.4 87 50.6
Haze_12078 Corylus avellana HOM05D009398 ORTHO05D011511 2.5e-14 84.3 186 31.7
Rhsim04G0086800 Rhododendron simsii HOM05D000171 ORTHO05D000101 2.5e-14 84.3 314 29.6
Rhsim08G0197100 Rhododendron simsii HOM05D000171 ORTHO05D000101 2.5e-14 84.3 305 25.9
Cfa009360 Carpinus fangiana HOM05D009398 ORTHO05D011511 4.2e-14 83.6 143 35.0
Prupe.1G300900 Prunus persica HOM05D015152 ORTHO05D009073 7.2e-14 82.8 286 28.3
RhsimUnG0048800 Rhododendron simsii HOM05D000171 ORTHO05D000101 7.2e-14 82.8 312 28.5
HanXRQChr05g0146481 Helianthus annuus HOM05D000171 ORTHO05D009073 1.6e-13 81.6 338 25.1
QL03p068339 Quercus lobata HOM05D009398 ORTHO05D011511 1.6e-13 81.6 279 27.6
MD02G1067600 Malus domestica HOM05D009792 ORTHO05D009073 2.1e-13 81.3 279 28.0
CSS0043495 Camellia sinensis var. sinensis HOM05D000171 ORTHO05D000101 2.7e-13 80.9 343 27.4
CSS0046872 Camellia sinensis var. sinensis HOM05D000171 ORTHO05D009073 2.7e-13 80.9 343 27.4
MD13G1020600 Malus domestica HOM05D000007 ORTHO05D009073 3.6e-13 80.5 377 22.3
Carub.0006s1025 Capsella rubella HOM05D000171 ORTHO05D000101 4.6e-13 80.1 290 25.2
HanXRQChr05g0156341 Helianthus annuus HOM05D000171 ORTHO05D009073 6.1e-13 79.7 334 27.8
MD03G1110700 Malus domestica HOM05D000007 ORTHO05D009073 1.0e-12 79.0 346 26.3
MD11G1124200 Malus domestica HOM05D000007 ORTHO05D009073 1.0e-12 79.0 380 25.3
FvH4_4g28520 Fragaria vesca HOM05D009792 ORTHO05D009073 2.3e-12 77.8 334 25.7
FAN12G2506 Fragaria x ananassa HOM05D009792 ORTHO05D009073 3.9e-12 77.0 334 25.7
Prupe.6G093100 Prunus persica HOM05D000007 ORTHO05D009073 3.9e-12 77.0 347 27.4
FvH4_4g07100 Fragaria vesca HOM05D000007 ORTHO05D009073 5.1e-12 76.6 342 26.0
CARHR290540 Cardamine hirsuta HOM05D000171 ORTHO05D000101 8.8e-12 75.9 332 24.4
Prupe.1G285300 Prunus persica HOM05D000007 ORTHO05D009073 8.8e-12 75.9 268 28.0
Rhsim08G0210600 Rhododendron simsii HOM05D000171 ORTHO05D000101 8.8e-12 75.9 308 26.0
HanXRQChr05g0146491 Helianthus annuus HOM05D000171 ORTHO05D009073 1.1e-11 75.5 297 25.3
RcHm_v2.0_Chr4g0399251 Rosa chinensis HOM05D000007 ORTHO05D009073 2.0e-11 74.7 316 27.8
AL6G22600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.3e-11 73.9 309 25.6
Cfa009305 Carpinus fangiana HOM05D009398 ORTHO05D011511 3.3e-11 73.9 131 35.1
MD16G1019000 Malus domestica HOM05D000007 ORTHO05D009073 3.3e-11 73.9 384 23.4
Cfa009048 Carpinus fangiana HOM05D009398 ORTHO05D011511 4.3e-11 73.6 297 26.9
TAR626G0319 Trochodendron aralioides HOM05D000007 ORTHO05D000017 4.3e-11 73.6 316 26.6
TAR627G0052 Trochodendron aralioides HOM05D000007 ORTHO05D000521 4.3e-11 73.6 330 26.7
Sabra08G0109000 Salix brachista HOM05D000171 ORTHO05D000101 7.4e-11 72.8 258 27.9
Cfa009423 Carpinus fangiana HOM05D009398 ORTHO05D011511 9.7e-11 72.4 75 46.7
Dinv16552 Davidia involucrata HOM05D000171 ORTHO05D000101 1.3e-10 72.0 266 27.8
Dinv30807 Davidia involucrata HOM05D000007 ORTHO05D000017 1.7e-10 71.6 311 24.8
MBI19_g26732_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 1.7e-10 71.6 299 25.4
Sabra14G0124200 Salix brachista HOM05D000007 ORTHO05D000521 1.7e-10 71.6 343 24.5
Duzib150G0415 Durio zibethinus HOM05D009398 ORTHO05D009073 2.8e-10 70.9 301 25.9
Thhalv10002533m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.8e-10 70.9 326 25.8
Lj6C666T13 Lonicera japonica HOM05D000007 ORTHO05D000017 2.8e-10 70.9 292 23.6
Sabra15G0099300 Salix brachista HOM05D000171 ORTHO05D000101 2.8e-10 70.9 258 26.7
Thhalv10027439m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.8e-10 70.1 293 22.9
Lj6C667T6 Lonicera japonica HOM05D000007 ORTHO05D000017 6.3e-10 69.7 218 26.1
Aqoxy3G02635 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 8.2e-10 69.3 328 24.1
CARHR147780 Cardamine hirsuta HOM05D000171 ORTHO05D000101 8.2e-10 69.3 291 22.3
MD11G1124500 Malus domestica HOM05D009792 ORTHO05D009073 8.2e-10 69.3 393 24.9
FAN01G1574 Fragaria x ananassa HOM05D000007 ORTHO05D009073 1.1e-09 68.9 282 25.2
Dinv38197 Davidia involucrata HOM05D000056 ORTHO05D000019 1.4e-09 68.6 306 22.5
Potri.014G162600 Populus trichocarpa HOM05D000007 ORTHO05D000521 1.4e-09 68.6 338 23.7
RcHm_v2.0_Chr4g0436521 Rosa chinensis HOM05D009792 ORTHO05D009073 1.4e-09 68.6 310 24.8
THA.LOC104799108 Tarenaya hassleriana HOM05D000171 ORTHO05D000101 1.4e-09 68.6 287 22.6
TAR371G0533 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.4e-09 68.6 254 24.8
HanXRQChr02g0047431 Helianthus annuus HOM05D000171 ORTHO05D009073 1.8e-09 68.2 304 25.3
HanXRQChr02g0047451 Helianthus annuus HOM05D000171 ORTHO05D009073 1.8e-09 68.2 304 25.3
AL1G44890 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.4e-09 67.8 339 24.5
HanXRQChr05g0146471 Helianthus annuus HOM05D000171 ORTHO05D000101 2.4e-09 67.8 284 26.1
FvH4_7g33810 Fragaria vesca HOM05D000007 ORTHO05D009073 3.1e-09 67.4 257 25.7
AT5G65850 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 4.1e-09 67.0 318 22.3
HanXRQChr05g0144641 Helianthus annuus HOM05D000007 ORTHO05D009073 4.1e-09 67.0 258 26.7
Aqoxy5G01000 Aquilegia oxysepala HOM05D000007 ORTHO05D000101 5.3e-09 66.6 295 24.7
BcaC05g26729 Brassica carinata HOM05D000171 ORTHO05D000101 5.3e-09 66.6 294 23.8
Thhalv10029328m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.3e-09 66.6 231 28.6
Thhalv10015870m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.9e-09 66.2 300 25.0
HanXRQChr02g0047271 Helianthus annuus HOM05D000171 ORTHO05D009073 6.9e-09 66.2 331 24.8
Hma1.2p1_0022F.1_g014760 Hydrangea macrophylla HOM05D000007 ORTHO05D007252 6.9e-09 66.2 288 24.7
AT4G21240 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 9.1e-09 65.9 290 24.1
TAR371G1227 Trochodendron aralioides HOM05D000007 ORTHO05D007252 9.1e-09 65.9 152 29.6
AL8G43560 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-08 65.5 315 23.5
FvH4_4g30181 Fragaria vesca HOM05D021789 ORTHO05D025345 1.2e-08 65.5 190 28.9
AL1G44920 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.5e-08 65.1 338 24.3
BcaB04g21351 Brassica carinata HOM05D000171 ORTHO05D000101 1.5e-08 65.1 307 23.1
FAN12G1824 Fragaria x ananassa HOM05D021789 ORTHO05D025345 1.5e-08 65.1 190 28.9
Rhsim03G0071300 Rhododendron simsii HOM05D000171 ORTHO05D004496 1.5e-08 65.1 307 25.4
TAR371G0093 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.5e-08 65.1 283 23.7
TAR371G0448 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.5e-08 65.1 221 24.9
Rhsim12G0109800 Rhododendron simsii HOM05D009398 ORTHO05D011511 2.0e-08 64.7 165 26.7
Carub.0006s1026 Capsella rubella HOM05D000171 ORTHO05D000101 2.6e-08 64.3 299 22.7
AL1G49450 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.4e-08 63.9 298 25.5
BcaC05g26732 Brassica carinata HOM05D000171 ORTHO05D000101 3.4e-08 63.9 298 22.5
Aa31LG4G10940 Aethionema arabicum HOM05D000171 ORTHO05D000101 4.5e-08 63.5 291 23.7
BcaC04g22265 Brassica carinata HOM05D000171 ORTHO05D000101 5.9e-08 63.2 283 23.0
A09p38690 Brassica napus HOM05D000171 ORTHO05D000101 5.9e-08 63.2 302 22.8
BraA09t39377Z Brassica rapa HOM05D000171 ORTHO05D000101 5.9e-08 63.2 302 22.8
DCAR_030528 Daucus carota HOM05D002200 ORTHO05D002294 5.9e-08 63.2 320 25.9
Thhalv10011966m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.9e-08 63.2 290 22.8
FvH4_3g05670 Fragaria vesca HOM05D015152 ORTHO05D009073 7.7e-08 62.8 296 24.3
BolC5t31377H Brassica oleracea HOM05D000171 ORTHO05D000101 1.0e-07 62.4 292 22.9
Carub.0004s2322 Capsella rubella HOM05D000171 ORTHO05D000101 1.0e-07 62.4 327 24.8
CARHR037850 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.0e-07 62.4 293 21.2
Thhalv10022230m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.0e-07 62.4 292 22.6
Potri.008G144000 Populus trichocarpa HOM05D000171 ORTHO05D010908 1.0e-07 62.4 258 26.0
HanXRQChr07g0189371 Helianthus annuus HOM05D000171 ORTHO05D009073 1.3e-07 62.0 326 25.5
QL04p037064 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-07 62.0 296 25.0
AL6G22480 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.7e-07 61.6 314 23.6
TAR371G1173 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.7e-07 61.6 125 35.2
AT1G30790 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.2e-07 61.2 340 23.8
MBI19_g26733_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 2.2e-07 61.2 282 23.8
TAR371G0292 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.2e-07 61.2 175 28.0
DCAR_011586 Daucus carota HOM05D000007 ORTHO05D009073 2.9e-07 60.8 362 20.4
Prupe.1G285500 Prunus persica HOM05D000007 ORTHO05D009073 2.9e-07 60.8 287 26.5
EL10Ac6g14555 Beta vulgaris HOM05D000007 ORTHO05D018548 3.8e-07 60.5 310 25.8
EL10Ac8g20568 Beta vulgaris HOM05D000007 ORTHO05D000017 3.8e-07 60.5 287 22.0
BcaB04g21352 Brassica carinata HOM05D000171 ORTHO05D000101 3.8e-07 60.5 238 24.4
BraA07t28785Z Brassica rapa HOM05D000171 ORTHO05D000101 3.8e-07 60.5 304 23.7
FAN11G1771 Fragaria x ananassa HOM05D015152 ORTHO05D009073 3.8e-07 60.5 236 25.0
Lsat_1_v5_gn_6_52021 Lactuca sativa HOM05D000007 ORTHO05D000039 3.8e-07 60.5 226 26.1
THA.LOC104821034 Tarenaya hassleriana HOM05D000171 ORTHO05D000101 3.8e-07 60.5 293 22.9
TAR371G0430 Trochodendron aralioides HOM05D000007 ORTHO05D007252 3.8e-07 60.5 175 28.0
C05p25940 Brassica napus HOM05D000171 ORTHO05D000101 6.5e-07 59.7 284 22.2
C09p21460 Brassica napus HOM05D000171 ORTHO05D000101 6.5e-07 59.7 283 23.7
Thhalv10000202m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.5e-07 59.7 359 22.3
BcaC05g26608 Brassica carinata HOM05D000171 ORTHO05D000101 8.5e-07 59.3 293 22.9
BcaNung05190 Brassica carinata HOM05D000171 ORTHO05D000101 8.5e-07 59.3 295 23.7
BNapus_Darmor_BZH_scaffold_78p00960 Brassica napus HOM05D000171 ORTHO05D000101 8.5e-07 59.3 253 24.1
C05p26570 Brassica napus HOM05D000171 ORTHO05D000101 8.5e-07 59.3 293 22.9
TWI18G1015 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 8.5e-07 59.3 332 21.7
BcaNung03087 Brassica carinata HOM05D000171 ORTHO05D000101 1.1e-06 58.9 296 22.6
Aa31LG5G14750 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.4e-06 58.5 229 22.7
Aqoxy5G04201 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.4e-06 58.5 197 26.4
AT4G13060 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.4e-06 58.5 320 25.3
BolC7t42021H Brassica oleracea HOM05D000171 ORTHO05D000101 1.9e-06 58.2 304 23.0
Lsat_1_v5_gn_8_22281 Lactuca sativa HOM05D000007 ORTHO05D000039 1.9e-06 58.2 252 25.8
A09p17250 Brassica napus HOM05D000171 ORTHO05D000101 2.5e-06 57.8 289 23.2
C03p84020 Brassica napus HOM05D000171 ORTHO05D000101 2.5e-06 57.8 137 28.5
BolC3t20680H Brassica oleracea HOM05D000171 ORTHO05D000101 2.5e-06 57.8 137 28.5
BraA01t04510Z Brassica rapa HOM05D000171 ORTHO05D000101 2.5e-06 57.8 253 23.7
AUR62006214 Chenopodium quinoa HOM05D000007 ORTHO05D000017 2.5e-06 57.8 241 22.0
Duzib268G0526 Durio zibethinus HOM05D000007 ORTHO05D000017 2.5e-06 57.8 158 32.9
FAN07G2784 Fragaria x ananassa HOM05D021789 ORTHO05D009073 2.5e-06 57.8 115 30.4
HanXRQChr05g0146381 Helianthus annuus HOM05D000171 ORTHO05D009073 2.5e-06 57.8 304 24.3
Actinidia07877 Actinidia chinensis HOM05D000007 ORTHO05D000521 3.2e-06 57.4 250 24.4
TAR371G0362 Trochodendron aralioides HOM05D000007 ORTHO05D007252 4.2e-06 57.0 137 29.2
Thhalv10015829m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.5e-06 56.6 107 37.4
FAN07G2491 Fragaria x ananassa HOM05D000007 ORTHO05D009073 5.5e-06 56.6 124 32.3
Thhalv10027566m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.2e-06 56.2 162 27.8


User provided reference genes

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