Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p065682 Quercus lobata HOM05D000596 ORTHO05D337107 4.9e-44 180.6 85 100.0
QL04p093712 Quercus lobata HOM05D000596 ORTHO05D001497 1.6e-10 69.3 49 67.3
Cfa019375 Carpinus fangiana HOM05D000596 ORTHO05D001497 3.9e-09 64.7 47 66.0
Cfa019378 Carpinus fangiana HOM05D000596 ORTHO05D001497 3.9e-09 64.7 47 66.0
Haze_07767 Corylus avellana HOM05D000596 ORTHO05D001497 3.9e-09 64.7 47 66.0
Potri.008G082400 Populus trichocarpa HOM05D000596 ORTHO05D001497 3.9e-09 64.7 63 52.4
Potri.008G082700 Populus trichocarpa HOM05D000596 ORTHO05D001497 3.9e-09 64.7 63 52.4
Thecc.07G189000 Theobroma cacao HOM05D000596 ORTHO05D001497 3.9e-09 64.7 54 57.4
Gohir.D01G085000 Gossypium hirsutum HOM05D000596 ORTHO05D001497 6.7e-09 63.9 53 58.5
QL04p093653 Quercus lobata HOM05D000596 ORTHO05D001497 6.7e-09 63.9 49 67.3
Gohir.A01G100300 Gossypium hirsutum HOM05D000596 ORTHO05D001497 8.8e-09 63.5 54 57.4
Duzib268G1815 Durio zibethinus HOM05D000596 ORTHO05D001497 1.5e-08 62.8 54 57.4
Sabra08G0061200 Salix brachista HOM05D000596 ORTHO05D001497 1.5e-08 62.8 63 50.8
Gorai.002G110600 Gossypium raimondii HOM05D000596 ORTHO05D001497 1.9e-08 62.4 54 57.4
RcHm_v2.0_Chr5g0023441 Rosa chinensis HOM05D000596 ORTHO05D001497 3.3e-08 61.6 52 57.7
ClCG09G022850 Citrullus lanatus HOM05D000596 ORTHO05D001497 4.3e-08 61.2 71 49.3
Sed0013143 Sechium edule HOM05D000596 ORTHO05D001497 5.7e-08 60.8 72 48.6
COL.COLO4_24972 Corchorus olitorius HOM05D000596 ORTHO05D001497 1.7e-07 59.3 52 55.8
Medtr3g058160 Medicago truncatula HOM05D000596 ORTHO05D001497 2.2e-07 58.9 50 58.0
Actinidia26212 Actinidia chinensis HOM05D000596 ORTHO05D001497 3.7e-07 58.2 55 52.7
Cpa.g.sc32.89 Carica papaya HOM05D000596 ORTHO05D001497 4.8e-07 57.8 55 52.7
CiPaw.11G057400 Carya illinoinensis HOM05D000596 ORTHO05D001497 4.8e-07 57.8 49 57.1
Rhsim06G0243900 Rhododendron simsii HOM05D000596 ORTHO05D001497 6.3e-07 57.4 53 54.7
Ca_03177_v3 Cicer arietinum L. HOM05D000596 ORTHO05D001497 8.2e-07 57.0 47 61.7
FvH4_3g14116 Fragaria vesca HOM05D000596 ORTHO05D001497 8.2e-07 57.0 52 51.9
FAN11G1456 Fragaria x ananassa HOM05D000596 ORTHO05D001497 8.2e-07 57.0 52 53.8
Lj3g0003312 Lotus japonicus HOM05D000596 ORTHO05D001497 8.2e-07 57.0 46 63.0
MD03G1187200 Malus domestica HOM05D000596 ORTHO05D001497 1.1e-06 56.6 47 59.6
VMungo1080G0244 Vigna mungo HOM05D000596 ORTHO05D001497 1.1e-06 56.6 50 58.0
CSS0004434 Camellia sinensis var. sinensis HOM05D000596 ORTHO05D001497 1.4e-06 56.2 35 68.6
CSS0029546 Camellia sinensis var. sinensis HOM05D000596 ORTHO05D001497 1.4e-06 56.2 33 72.7
CSS0034333 Camellia sinensis var. sinensis HOM05D000596 ORTHO05D001497 1.4e-06 56.2 33 72.7
Lj3g0006630 Lotus japonicus HOM05D000596 ORTHO05D001497 1.4e-06 56.2 48 58.3
Manes.16G047800 Manihot esculenta HOM05D000596 ORTHO05D001497 1.4e-06 56.2 46 60.9
Phvul.005G048500 Phaseolus vulgaris HOM05D000596 ORTHO05D001497 1.4e-06 56.2 50 58.0
Prupe.4G128500 Prunus persica HOM05D000596 ORTHO05D001497 1.4e-06 56.2 54 55.6
FAN25G1921 Fragaria x ananassa HOM05D000596 ORTHO05D001497 1.8e-06 55.8 52 53.8
Medtr2g064295 Medicago truncatula HOM05D000596 ORTHO05D001497 1.8e-06 55.8 46 60.9
RcHm_v2.0_Chr5g0023641 Rosa chinensis HOM05D000596 ORTHO05D001497 1.8e-06 55.8 45 57.8
TPR.G28437 Trifolium pratense HOM05D000596 ORTHO05D001497 1.8e-06 55.8 46 60.9
arahy.Tifrunner.gnm1.ann1.E0N850 Arachis hypogaea HOM05D000596 ORTHO05D001497 2.4e-06 55.5 46 60.9
arahy.Tifrunner.gnm1.ann1.JE8Q7C Arachis hypogaea HOM05D000596 ORTHO05D001497 2.4e-06 55.5 46 60.9
MELO3C012592.2 Cucumis melo HOM05D000596 ORTHO05D001497 2.4e-06 55.5 71 46.5
Glyma.08G163900 Glycine max HOM05D000596 ORTHO05D001497 2.4e-06 55.5 46 60.9
MD10G1216200 Malus domestica HOM05D000596 ORTHO05D001497 2.4e-06 55.5 49 57.1
TAR626G0464 Trochodendron aralioides HOM05D000596 ORTHO05D001497 2.4e-06 55.5 55 49.1
CsaV3_7G023060 Cucumis sativus L. HOM05D000596 ORTHO05D001497 3.1e-06 55.1 71 46.5
FAN16G2368 Fragaria x ananassa HOM05D000596 ORTHO05D001497 3.1e-06 55.1 52 53.8
Lj2C688T6 Lonicera japonica HOM05D000596 ORTHO05D001497 3.1e-06 55.1 73 41.1
TPR.G3601 Trifolium pratense HOM05D000596 ORTHO05D001497 3.1e-06 55.1 56 53.6
Aqoxy1G03723 Aquilegia oxysepala HOM05D000596 ORTHO05D001497 4.1e-06 54.7 54 46.3
FvH4_3g14130 Fragaria vesca HOM05D000596 ORTHO05D001497 4.1e-06 54.7 52 51.9
FAN11G2196 Fragaria x ananassa HOM05D000596 ORTHO05D001497 4.1e-06 54.7 52 51.9
FAN16G1416 Fragaria x ananassa HOM05D000596 ORTHO05D001497 4.1e-06 54.7 52 51.9
FAN16G3502 Fragaria x ananassa HOM05D000596 ORTHO05D001497 4.1e-06 54.7 52 51.9
FAN21G1526 Fragaria x ananassa HOM05D000596 ORTHO05D001497 4.1e-06 54.7 52 51.9
Lalb_Chr01g0015561 Lupinus albus HOM05D000596 ORTHO05D001497 4.1e-06 54.7 48 54.2
TWI38G0803 Tripterygium wilfordii HOM05D000596 ORTHO05D001497 4.1e-06 54.7 52 51.9
FAN25G1693 Fragaria x ananassa HOM05D000596 ORTHO05D001497 6.9e-06 53.9 52 51.9
RcHm_v2.0_Chr5g0023471 Rosa chinensis HOM05D000596 ORTHO05D001497 6.9e-06 53.9 52 51.9
Dinv19575 Davidia involucrata HOM05D000596 ORTHO05D001497 9.1e-06 53.5 33 69.7
Glyma.15G263332 Glycine max HOM05D000596 ORTHO05D001497 9.1e-06 53.5 46 58.7
MBI18_g01522_MAGBIO Magnolia biondii HOM05D000596 ORTHO05D001497 9.1e-06 53.5 33 66.7


User provided reference genes

Program Settings