Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p064380 Quercus lobata HOM05D006743 ORTHO05D008518 9.9e-107 390.2 207 100.0
CiPaw.06G083800 Carya illinoinensis HOM05D006743 ORTHO05D008518 7.9e-88 327.4 201 86.1
MD16G1074200 Malus domestica HOM05D006743 ORTHO05D008518 4.1e-84 315.1 201 80.6
Lalb_Chr16g0385831 Lupinus albus HOM05D006743 ORTHO05D008518 2.2e-82 309.3 201 79.1
arahy.Tifrunner.gnm1.ann1.0ELP1Z Arachis hypogaea HOM05D006743 ORTHO05D008518 2.9e-82 308.9 201 80.6
arahy.Tifrunner.gnm1.ann1.MT78EL Arachis hypogaea HOM05D006743 ORTHO05D008518 6.5e-82 307.8 201 80.1
TAR622G0326 Trochodendron aralioides HOM05D006743 ORTHO05D008518 6.5e-82 307.8 201 78.1
Dinv16636 Davidia involucrata HOM05D006743 ORTHO05D008518 8.5e-82 307.4 201 81.1
Cpa.g.sc128.13 Carica papaya HOM05D006743 ORTHO05D008518 1.6e-80 303.1 201 78.6
Sc14g0008270 Simmondsia chinensis HOM05D006743 ORTHO05D008518 6.1e-80 301.2 201 78.6
RcHm_v2.0_Chr4g0439961 Rosa chinensis HOM05D006743 ORTHO05D008518 7.9e-80 300.8 202 79.2
TWI12G0418 Tripterygium wilfordii HOM05D006743 ORTHO05D008518 7.9e-80 300.8 201 75.1
Haze_12021 Corylus avellana HOM05D006743 ORTHO05D008518 1.4e-79 300.1 183 85.8
CSS0008818 Camellia sinensis var. sinensis HOM05D006743 ORTHO05D008518 1.8e-79 299.7 201 78.1
CANSAT80G2808 Cannabis sativa HOM05D006743 ORTHO05D008518 1.8e-79 299.7 201 77.6
Duzib268G1478 Durio zibethinus HOM05D006743 ORTHO05D008518 2.3e-79 299.3 201 78.6
FAN12G0030 Fragaria x ananassa HOM05D006743 ORTHO05D008518 2.3e-79 299.3 202 78.7
FvH4_4g31470 Fragaria vesca HOM05D006743 ORTHO05D008518 3.0e-79 298.9 202 78.7
Thecc.02G350900 Theobroma cacao HOM05D006743 ORTHO05D008518 3.9e-79 298.5 201 79.6
FAN22G1517 Fragaria x ananassa HOM05D006743 ORTHO05D008518 5.1e-79 298.1 202 78.2
Hma1.2p1_0598F.1_g186630 Hydrangea macrophylla HOM05D006743 ORTHO05D008518 5.1e-79 298.1 201 78.1
Potri.019G092000 Populus trichocarpa HOM05D006743 ORTHO05D008518 5.1e-79 298.1 201 76.6
Gohir.A12G165400 Gossypium hirsutum HOM05D006743 ORTHO05D008518 8.8e-79 297.4 201 79.6
Manes.01G186600 Manihot esculenta HOM05D006743 ORTHO05D008518 8.8e-79 297.4 201 76.6
vmacro01252 Vaccinium macrocarpon HOM05D006743 ORTHO05D008518 1.1e-78 297.0 201 77.6
Gohir.D12G168500 Gossypium hirsutum HOM05D006743 ORTHO05D008518 4.4e-78 295.0 201 79.6
Atru.chr11.1802 Acer truncatum HOM05D006743 ORTHO05D008518 7.4e-78 294.3 201 77.6
Phvul.003G049600 Phaseolus vulgaris HOM05D006743 ORTHO05D008518 7.4e-78 294.3 201 75.6
Potri.013G124050 Populus trichocarpa HOM05D006743 ORTHO05D008518 7.4e-78 294.3 201 76.6
Sed0013774 Sechium edule HOM05D006743 ORTHO05D008518 7.4e-78 294.3 201 76.1
THA.LOC104805154 Tarenaya hassleriana HOM05D006743 ORTHO05D008518 1.3e-77 293.5 201 75.6
GSVIVG01020003001 Vitis vinifera HOM05D006743 ORTHO05D008518 1.7e-77 293.1 201 74.1
Rhsim12G0063200 Rhododendron simsii HOM05D006743 ORTHO05D008518 2.2e-77 292.7 201 76.6
MELO3C024128.2 Cucumis melo HOM05D006743 ORTHO05D008518 2.8e-77 292.4 201 76.1
Sp1g12650 Schrenkiella parvula HOM05D006743 ORTHO05D008518 4.8e-77 291.6 201 74.1
AL1G26180 Arabidopsis lyrata HOM05D006743 ORTHO05D008518 6.3e-77 291.2 201 74.1
BcaC05g25323 Brassica carinata HOM05D006743 ORTHO05D008518 6.3e-77 291.2 201 74.1
Glyma.18G120051 Glycine max HOM05D006743 ORTHO05D008518 8.2e-77 290.8 201 75.6
Psat4g134120 Pisum sativum HOM05D006743 ORTHO05D008518 8.2e-77 290.8 201 75.6
A06p10280 Brassica napus HOM05D006743 ORTHO05D008518 1.4e-76 290.0 201 73.1
BraA06t24210Z Brassica rapa HOM05D006743 ORTHO05D008518 1.4e-76 290.0 201 73.1
Glyma.08G300451 Glycine max HOM05D006743 ORTHO05D008518 1.4e-76 290.0 201 75.6
PGR119G0901 Punica granatum HOM05D006743 ORTHO05D008518 1.4e-76 290.0 201 73.1
EL10Ac6g13192 Beta vulgaris HOM05D006743 ORTHO05D008518 2.4e-76 289.3 201 75.1
Carub.0001s1398 Capsella rubella HOM05D006743 ORTHO05D008518 2.4e-76 289.3 201 73.6
AUR62028791 Chenopodium quinoa HOM05D006743 ORTHO05D008518 2.4e-76 289.3 201 75.6
CsaV3_7G025360 Cucumis sativus L. HOM05D006743 ORTHO05D008518 3.1e-76 288.9 201 75.1
Hund05886 Selenicereus undatus HOM05D006743 ORTHO05D008518 3.1e-76 288.9 207 73.9
Aa31LG1G750 Aethionema arabicum HOM05D006743 ORTHO05D008518 9.1e-76 287.3 201 73.1
MSTRG.13418 Avicennia marina HOM05D006743 ORTHO05D008518 9.1e-76 287.3 201 75.1
MBI02_g23683_MAGBIO Magnolia biondii HOM05D006743 ORTHO05D008518 9.1e-76 287.3 201 74.1
VMungo0251G3125 Vigna mungo HOM05D006743 ORTHO05D008518 1.2e-75 287.0 201 74.1
C05p12050 Brassica napus HOM05D006743 ORTHO05D008518 1.5e-75 286.6 201 72.1
BolC5t29959H Brassica oleracea HOM05D006743 ORTHO05D008518 1.5e-75 286.6 201 72.1
Actinidia31893 Actinidia chinensis HOM05D006743 ORTHO05D008518 2.0e-75 286.2 201 73.6
CARHR014720 Cardamine hirsuta HOM05D006743 ORTHO05D008518 2.0e-75 286.2 201 72.6
Cc11_g13110 Coffea canephora HOM05D006743 ORTHO05D008518 2.0e-75 286.2 201 76.6
HanXRQChr12g0362551 Helianthus annuus HOM05D006743 ORTHO05D008518 5.9e-75 284.6 201 76.6
Lj4g0006351 Lotus japonicus HOM05D006743 ORTHO05D008518 5.9e-75 284.6 201 73.6
Ca_24218_v3 Cicer arietinum L. HOM05D006743 ORTHO05D008518 1.0e-74 283.9 201 73.6
AT1G14300 Arabidopsis thaliana HOM05D006743 ORTHO05D008518 1.3e-74 283.5 201 72.6
Lj3C1038T21 Lonicera japonica HOM05D006743 ORTHO05D008518 2.9e-74 282.3 201 74.1
SGA_v2.0_scaffold389G50576 Striga asiatica HOM05D006743 ORTHO05D008518 3.8e-74 282.0 201 74.1
DCAR_007148 Daucus carota HOM05D006743 ORTHO05D008518 6.5e-74 281.2 201 73.6
AUR62005766 Chenopodium quinoa HOM05D006743 ORTHO05D008518 5.5e-73 278.1 200 73.5
Sabra13G0103000 Salix brachista HOM05D006743 ORTHO05D008518 5.5e-73 278.1 232 65.5
SalBow8G2540 Salvia bowleyana HOM05D006743 ORTHO05D008518 7.2e-73 277.7 202 75.7
COL.COLO4_22995 Corchorus olitorius HOM05D006743 ORTHO05D008518 1.2e-72 276.9 207 72.0
Peaxi162Scf00541g00528 Petunia axillaris HOM05D006743 ORTHO05D008518 2.1e-72 276.2 201 74.6
Medtr8g055880 Medicago truncatula HOM05D006743 ORTHO05D008518 3.6e-72 275.4 201 71.1
Aqoxy3G00673 Aquilegia oxysepala HOM05D006743 ORTHO05D008518 1.4e-71 273.5 202 69.3
ECA233G3761 Erigeron canadensis HOM05D006743 ORTHO05D008518 3.9e-71 271.9 201 71.1
Nitab4.5_0012364g0010 Nicotiana tabacum HOM05D006743 ORTHO05D008518 4.4e-70 268.5 202 73.3
Lsat_1_v5_gn_8_52820 Lactuca sativa HOM05D006743 ORTHO05D008518 2.2e-69 266.2 201 71.1
ATR0564G062 Amborella trichopoda HOM05D006743 ORTHO05D008518 1.4e-68 263.5 202 70.3
PSO478G0657 Papaver somniferum HOM05D006743 ORTHO05D008518 1.8e-68 263.1 207 67.6
Solyc05g007440.3 Solanum lycopersicum HOM05D006743 ORTHO05D008518 2.4e-68 262.7 201 72.6
CAN.G58.36 Capsicum annuum HOM05D006743 ORTHO05D008518 3.1e-68 262.3 201 72.1
PGSC0003DMG400003385 Solanum tuberosum HOM05D006743 ORTHO05D008518 9.1e-68 260.8 201 72.1
unitig_22.g5546 Utricularia gibba HOM05D006743 ORTHO05D008518 1.0e-66 257.3 201 67.7
ClCG09G009490 Citrullus lanatus HOM05D006743 ORTHO05D008518 2.5e-65 252.7 201 68.7
CDE02G3655 Ceratophyllum demersum HOM05D006743 ORTHO05D008518 7.2e-65 251.1 202 65.8
TPR.G31812 Trifolium pratense HOM05D006743 ORTHO05D008518 1.2e-64 250.4 191 69.6
BcaNung06708 Brassica carinata HOM05D006743 ORTHO05D008518 2.2e-58 229.6 164 72.0
Os10g0406800 Oryza sativa ssp. japonica HOM05D006743 ORTHO05D008518 6.1e-56 221.5 210 59.5
Zm00001eb223220 Zea mays HOM05D006743 ORTHO05D008518 8.0e-56 221.1 208 60.1
Nn3g17215 Nelumbo nucifera HOM05D006743 ORTHO05D008518 1.5e-54 216.9 201 61.2
Nitab4.5_0000703g0080 Nicotiana tabacum HOM05D006743 ORTHO05D008518 7.0e-52 208.0 166 69.3
Mapoly0146s0011 Marchantia polymorpha HOM05D006743 ORTHO05D008518 7.7e-51 204.5 202 55.0
Oeu045402.1 Olea europaea HOM05D006743 ORTHO05D008518 1.7e-50 203.4 149 73.8
SMO307G0042 Selaginella moellendorffii HOM05D006743 ORTHO05D008518 1.0e-47 194.1 201 51.2
Pp3c6_14800 Physcomitrium patens HOM05D006743 ORTHO05D008518 7.5e-46 188.0 200 51.0
Sabra19G0105400 Salix brachista HOM05D006743 ORTHO05D008518 7.8e-43 177.9 226 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2267 Anthoceros agrestis HOM05D006743 ORTHO05D008518 1.7e-42 176.8 211 46.4
AagrBONN_evm.TU.Sc2ySwM_27.11 Anthoceros agrestis HOM05D006743 ORTHO05D008518 2.6e-38 162.9 211 43.6
AagrBONN_evm.TU.Sc2ySwM_27.9 Anthoceros agrestis HOM05D006743 ORTHO05D008518 2.6e-38 162.9 211 43.6
Migut.E00098 Erythranthe guttata HOM05D006743 ORTHO05D008518 1.7e-37 160.2 125 71.2
Sopen05g003320 Solanum pennellii HOM05D006743 ORTHO05D008518 3.2e-36 156.0 120 72.5
Actinidia28328 Actinidia chinensis HOM05D006743 ORTHO05D008518 1.3e-34 150.6 124 63.7
HPP92_011352 Vanilla planifolia HOM05D006743 ORTHO05D008518 3.6e-32 142.5 114 65.8
CBR_g41270 Chara braunii HOM05D006743 ORTHO05D008518 3.1e-31 139.4 206 40.8
Nn1g08820 Nelumbo nucifera HOM05D006743 ORTHO05D008518 5.8e-30 135.2 143 54.5
Nn4g22981 Nelumbo nucifera HOM05D006743 ORTHO05D008518 5.8e-30 135.2 143 54.5
DCAR_010724 Daucus carota HOM05D006743 ORTHO05D008518 6.4e-29 131.7 185 44.3
Cre10.g437100 Chlamydomonas reinhardtii HOM05D006743 ORTHO05D008518 7.0e-28 128.3 208 37.0
Migut.E00100 Erythranthe guttata HOM05D006743 ORTHO05D008518 2.7e-27 126.3 77 81.8
Lsat_1_v5_gn_7_2081 Lactuca sativa HOM05D006743 ORTHO05D008518 2.5e-25 119.8 143 53.1
Hma1.2p1_0598F.1_g186620 Hydrangea macrophylla HOM05D006743 ORTHO05D008518 4.3e-25 119.0 71 84.5
Oeu045403.1 Olea europaea HOM05D006743 ORTHO05D008518 8.1e-16 88.2 51 88.2
SEGI_31629 Sequoiadendron giganteum HOM05D006743 ORTHO05D008518 3.4e-14 82.8 72 61.1
Ca_23751_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 4.9e-13 79.0 133 42.1
Ca_27492_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 4.9e-13 79.0 133 42.1
PRCOL_00003635 Prasinoderma coloniale HOM05D006743 ORTHO05D008518 1.9e-09 67.0 189 29.6
AagrBONN_evm.TU.Sc2ySwM_117.3556 Anthoceros agrestis HOM05D006743 ORTHO05D008518 4.0e-07 59.3 58 44.8
Peaxi162Scf00541g00531 Petunia axillaris HOM05D006743 ORTHO05D008518 1.2e-06 57.8 41 68.3


User provided reference genes

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