Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p064300 Quercus lobata HOM05D004646 ORTHO05D005829 4.1e-148 528.1 277 100.0
QL03p063041 Quercus lobata HOM05D004646 ORTHO05D005829 8.8e-135 483.8 256 99.6
QL03p064307 Quercus lobata HOM05D004646 ORTHO05D005829 1.3e-56 224.2 276 52.9
CiPaw.05G135800 Carya illinoinensis HOM05D004646 ORTHO05D005829 1.2e-54 217.6 253 51.4
Cfa008987 Carpinus fangiana HOM05D004646 ORTHO05D005829 1.1e-52 211.1 283 48.4
CANSAT64G1881 Cannabis sativa HOM05D004646 ORTHO05D005829 8.8e-50 201.4 230 53.9
QL03p063033 Quercus lobata HOM05D004646 ORTHO05D005829 5.7e-49 198.7 258 51.2
Ciclev10032082m.g Citrus clementina HOM05D004646 ORTHO05D005829 9.7e-49 198.0 259 47.9
Aqoxy3G03371 Aquilegia oxysepala HOM05D004646 ORTHO05D005829 1.4e-47 194.1 276 43.5
Hma1.2p1_0795F.1_g218775 Hydrangea macrophylla HOM05D004646 ORTHO05D005829 1.8e-47 193.7 278 42.8
ClCG05G024330 Citrullus lanatus HOM05D004646 ORTHO05D005829 4.1e-47 192.6 242 47.1
MELO3C012090.2 Cucumis melo HOM05D004646 ORTHO05D005829 1.5e-46 190.7 279 44.4
Manes.05G100900 Manihot esculenta HOM05D004646 ORTHO05D005829 2.0e-46 190.3 255 45.5
Dinv16641 Davidia involucrata HOM05D004646 ORTHO05D005829 1.0e-45 188.0 235 46.4
Nn3g17224 Nelumbo nucifera HOM05D004646 ORTHO05D005829 1.7e-45 187.2 223 49.8
Lalb_Chr09g0329301 Lupinus albus HOM05D004646 ORTHO05D005829 6.5e-45 185.3 268 45.5
Oeu055120.1 Olea europaea HOM05D004646 ORTHO05D005829 6.5e-45 185.3 226 48.2
Lj4g0000065 Lotus japonicus HOM05D004646 ORTHO05D005829 1.9e-44 183.7 280 43.9
Potri.008G147600 Populus trichocarpa HOM05D004646 ORTHO05D005829 1.9e-44 183.7 214 50.5
CsaV3_5G032630 Cucumis sativus L. HOM05D004646 ORTHO05D005829 2.5e-44 183.3 279 43.0
Phvul.L004046 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 3.2e-44 183.0 262 46.6
Psat4g134400 Pisum sativum HOM05D004646 ORTHO05D005829 3.2e-44 183.0 224 46.0
Sabra08G0112200 Salix brachista HOM05D004646 ORTHO05D005829 4.2e-44 182.6 229 48.9
Thecc.02G347000 Theobroma cacao HOM05D004646 ORTHO05D005829 4.2e-44 182.6 237 48.1
Sed0009585 Sechium edule HOM05D004646 ORTHO05D005829 5.5e-44 182.2 258 43.8
VMungo1127G0944 Vigna mungo HOM05D004646 ORTHO05D005829 5.5e-44 182.2 244 48.0
Atru.chr11.1794 Acer truncatum HOM05D004646 ORTHO05D005829 9.4e-44 181.4 268 44.4
Medtr8g467540 Medicago truncatula HOM05D004646 ORTHO05D005829 1.2e-43 181.0 280 41.4
Gohir.A04G147800 Gossypium hirsutum HOM05D004646 ORTHO05D005829 3.6e-43 179.5 227 49.8
Phvul.011G179800 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 3.6e-43 179.5 281 44.1
Lalb_Chr05g0220381 Lupinus albus HOM05D004646 ORTHO05D005829 4.7e-43 179.1 286 43.7
COL.COLO4_23008 Corchorus olitorius HOM05D004646 ORTHO05D005829 6.1e-43 178.7 239 44.4
PGR102G1495 Punica granatum HOM05D004646 ORTHO05D005829 6.1e-43 178.7 293 41.3
CSS0046070 Camellia sinensis var. sinensis HOM05D004646 ORTHO05D005829 7.9e-43 178.3 266 45.5
Gorai.012G187500 Gossypium raimondii HOM05D004646 ORTHO05D005829 1.0e-42 177.9 240 49.2
MSTRG.7804 Avicennia marina HOM05D004646 ORTHO05D005829 1.4e-42 177.6 285 41.1
Cc11_g13050 Coffea canephora HOM05D004646 ORTHO05D005829 1.4e-42 177.6 236 46.2
Glyma.18G119400 Glycine max HOM05D004646 ORTHO05D005829 1.4e-42 177.6 288 44.8
Eucgr.B03438 Eucalyptus grandis HOM05D004646 ORTHO05D005829 1.8e-42 177.2 226 48.2
Sc14g0008260 Simmondsia chinensis HOM05D004646 ORTHO05D005829 3.0e-42 176.4 231 45.5
DCAR_027410 Daucus carota HOM05D004646 ORTHO05D005829 3.9e-42 176.0 226 50.0
Duzib251G0705 Durio zibethinus HOM05D004646 ORTHO05D005829 5.2e-42 175.6 271 45.8
Prupe.1G273600 Prunus persica HOM05D004646 ORTHO05D005829 5.2e-42 175.6 291 41.6
THA.LOC104801795 Tarenaya hassleriana HOM05D004646 ORTHO05D005829 5.2e-42 175.6 227 46.7
GSVIVG01019995001 Vitis vinifera HOM05D004646 ORTHO05D005829 5.2e-42 175.6 233 48.5
MD13G1072600 Malus domestica HOM05D004646 ORTHO05D005829 6.7e-42 175.3 222 44.1
MD16G1073400 Malus domestica HOM05D004646 ORTHO05D005829 8.8e-42 174.9 229 44.1
Gohir.D04G192100 Gossypium hirsutum HOM05D004646 ORTHO05D005829 1.1e-41 174.5 239 48.1
arahy.Tifrunner.gnm1.ann1.9WQ92K Arachis hypogaea HOM05D004646 ORTHO05D005829 2.0e-41 173.7 225 46.7
PSO832G2587 Papaver somniferum HOM05D004646 ORTHO05D005829 2.0e-41 173.7 249 42.6
FAN12G2979 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.6e-41 173.3 248 43.5
PSO063G0788 Papaver somniferum HOM05D004646 ORTHO05D005829 2.6e-41 173.3 249 43.0
FvH4_4g31430 Fragaria vesca HOM05D004646 ORTHO05D005829 3.3e-41 172.9 248 42.7
CDE09G0693 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 5.7e-41 172.2 235 44.3
AUR62028786 Chenopodium quinoa HOM05D004646 ORTHO05D005829 5.7e-41 172.2 226 45.6
SalBow2G3250 Salvia bowleyana HOM05D004646 ORTHO05D005829 1.3e-40 171.0 237 45.6
Haze_12017 Corylus avellana HOM05D004646 ORTHO05D005829 2.2e-40 170.2 279 43.7
ATR0564G518 Amborella trichopoda HOM05D004646 ORTHO05D005829 2.8e-40 169.9 206 50.0
HanXRQChr12g0362151 Helianthus annuus HOM05D004646 ORTHO05D005829 3.7e-40 169.5 225 44.9
FAN07G2721 Fragaria x ananassa HOM05D004646 ORTHO05D005829 4.8e-40 169.1 248 43.1
Lsat_1_v5_gn_8_53300 Lactuca sativa HOM05D004646 ORTHO05D005829 4.8e-40 169.1 293 41.0
Solyc05g007500.4 Solanum lycopersicum HOM05D004646 ORTHO05D005829 4.8e-40 169.1 264 42.0
arahy.Tifrunner.gnm1.ann1.K6CIAB Arachis hypogaea HOM05D004646 ORTHO05D005829 6.3e-40 168.7 239 44.4
Glyma.08G300800 Glycine max HOM05D004646 ORTHO05D005829 6.3e-40 168.7 200 50.5
Actinidia31896 Actinidia chinensis HOM05D004646 ORTHO05D005829 8.2e-40 168.3 232 45.7
C05p12020 Brassica napus HOM05D004646 ORTHO05D005829 1.1e-39 167.9 224 46.9
FAN17G1826 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.1e-39 167.9 248 44.0
RcHm_v2.0_Chr4g0439911 Rosa chinensis HOM05D004646 ORTHO05D005829 1.1e-39 167.9 283 40.3
Carub.0001s1395 Capsella rubella HOM05D004646 ORTHO05D005829 1.4e-39 167.5 223 45.3
Sopen05g003380 Solanum pennellii HOM05D004646 ORTHO05D005829 2.4e-39 166.8 268 42.9
BolC5t29957H Brassica oleracea HOM05D004646 ORTHO05D005829 3.1e-39 166.4 224 46.9
AT1G14270 Arabidopsis thaliana HOM05D004646 ORTHO05D005829 7.0e-39 165.2 201 47.3
Nn4g23150 Nelumbo nucifera HOM05D004646 ORTHO05D005829 9.1e-39 164.9 182 48.4
BcaB03g13106 Brassica carinata HOM05D004646 ORTHO05D005829 1.2e-38 164.5 218 45.9
TPR.G31818 Trifolium pratense HOM05D004646 ORTHO05D005829 1.2e-38 164.5 266 40.2
ECA233G2883 Erigeron canadensis HOM05D004646 ORTHO05D005829 2.0e-38 163.7 244 42.6
Sp1g12620 Schrenkiella parvula HOM05D004646 ORTHO05D005829 2.0e-38 163.7 202 50.0
PGSC0003DMG400031270 Solanum tuberosum HOM05D004646 ORTHO05D005829 2.0e-38 163.7 273 42.5
vmacro01257 Vaccinium macrocarpon HOM05D004646 ORTHO05D005829 2.0e-38 163.7 207 51.2
Thhalv10008130m.g Eutrema salsugineum HOM05D004646 ORTHO05D005829 2.6e-38 163.3 202 49.5
MBI05_g08286_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 2.6e-38 163.3 215 47.0
AL1G26150 Arabidopsis lyrata HOM05D004646 ORTHO05D005829 4.5e-38 162.5 201 46.8
Aa31LG1G790 Aethionema arabicum HOM05D004646 ORTHO05D005829 5.9e-38 162.2 200 46.5
HPP92_027580 Vanilla planifolia HOM05D004646 ORTHO05D005829 7.7e-38 161.8 247 42.1
CAN.G58.23 Capsicum annuum HOM05D004646 ORTHO05D005829 1.0e-37 161.4 240 42.5
SGA_v2.0_scaffold53G19364 Striga asiatica HOM05D004646 ORTHO05D005829 1.0e-37 161.4 237 46.0
A08p32030 Brassica napus HOM05D004646 ORTHO05D005829 1.7e-37 160.6 240 43.3
BraA08t35124Z Brassica rapa HOM05D004646 ORTHO05D005829 2.9e-37 159.8 240 43.3
A06p10240 Brassica napus HOM05D004646 ORTHO05D005829 3.8e-37 159.5 224 46.9
BraA06t24207Z Brassica rapa HOM05D004646 ORTHO05D005829 3.8e-37 159.5 224 46.9
Hund05883 Selenicereus undatus HOM05D004646 ORTHO05D005829 1.1e-36 157.9 283 37.8
unitig_747.g21177 Utricularia gibba HOM05D004646 ORTHO05D005829 1.9e-36 157.1 207 44.4
BcaC07g38729 Brassica carinata HOM05D004646 ORTHO05D005829 2.5e-36 156.8 232 42.2
Migut.L01300 Erythranthe guttata HOM05D004646 ORTHO05D005829 5.5e-36 155.6 286 36.7
Zm00001eb312490 Zea mays HOM05D004646 ORTHO05D005829 9.4e-36 154.8 222 43.2
EL10Ac6g13196 Beta vulgaris HOM05D004646 ORTHO05D005829 1.2e-35 154.5 292 40.4
C08p16560 Brassica napus HOM05D004646 ORTHO05D005829 1.2e-35 154.5 232 41.8
BolC8t49284H Brassica oleracea HOM05D004646 ORTHO05D005829 1.6e-35 154.1 232 41.8
Nitab4.5_0001503g0160 Nicotiana tabacum HOM05D004646 ORTHO05D005829 2.7e-35 153.3 254 41.3
Rhsim12G0063600 Rhododendron simsii HOM05D004646 ORTHO05D005829 1.8e-34 150.6 301 37.5
Peaxi162Scf00541g00118 Petunia axillaris HOM05D004646 ORTHO05D005829 2.3e-34 150.2 277 36.8
Hund25246 Selenicereus undatus HOM05D004646 ORTHO05D005829 2.0e-33 147.1 228 40.8
Zm00001eb041360 Zea mays HOM05D004646 ORTHO05D005829 3.7e-32 142.9 203 41.9
VMungo0251G2645 Vigna mungo HOM05D004646 ORTHO05D005829 9.1e-31 138.3 206 42.7
Lj2g0013736 Lotus japonicus HOM05D004646 ORTHO05D005829 3.5e-30 136.3 287 35.9
Migut.L01298 Erythranthe guttata HOM05D004646 ORTHO05D005829 3.8e-29 132.9 235 38.7
Migut.L01299 Erythranthe guttata HOM05D004646 ORTHO05D005829 3.8e-29 132.9 225 39.6
Cpa.g.sc128.19 Carica papaya HOM05D004646 ORTHO05D005829 2.5e-28 130.2 175 45.1
arahy.Tifrunner.gnm1.ann1.33WNW9 Arachis hypogaea HOM05D004646 ORTHO05D005829 6.1e-27 125.6 206 39.3
BcaC05g25320 Brassica carinata HOM05D004646 ORTHO05D005829 8.0e-27 125.2 228 40.8
Lj2g0003230 Lotus japonicus HOM05D004646 ORTHO05D005829 6.8e-26 122.1 260 35.0
Nitab4.5_0011071g0010 Nicotiana tabacum HOM05D004646 ORTHO05D005829 6.8e-26 122.1 226 38.1
FAN22G0666 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.4e-25 119.8 174 42.5
Mapoly0033s0092 Marchantia polymorpha HOM05D004646 ORTHO05D005829 2.8e-24 116.7 271 33.9
Pp3c21_22610 Physcomitrium patens HOM05D004646 ORTHO05D005829 1.8e-23 114.0 203 38.4
TAR371G0666 Trochodendron aralioides HOM05D004646 ORTHO05D005829 1.8e-23 114.0 204 39.7
AUR62005771 Chenopodium quinoa HOM05D004646 ORTHO05D005829 1.6e-22 110.9 192 38.5
TAR629G0643 Trochodendron aralioides HOM05D004646 ORTHO05D005829 5.9e-22 109.0 278 32.7
Nn1g09141 Nelumbo nucifera HOM05D004646 ORTHO05D005829 1.3e-21 107.8 208 33.7
AagrBONN_evm.TU.Sc2ySwM_228.1869 Anthoceros agrestis HOM05D004646 ORTHO05D005829 6.5e-21 105.5 200 34.5
CBR_g52133 Chara braunii HOM05D004646 ORTHO05D005829 1.0e-18 98.2 202 32.7
ECA247G1057 Erigeron canadensis HOM05D004646 ORTHO05D000001 1.0e-18 98.2 80 61.2
SMO007G0001 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 8.8e-18 95.1 184 35.9
SMO200G0049 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 8.8e-18 95.1 184 35.9
CARHR014690 Cardamine hirsuta HOM05D004646 ORTHO05D005829 4.4e-17 92.8 103 44.7
arahy.Tifrunner.gnm1.ann1.J8CRVY Arachis hypogaea HOM05D004646 ORTHO05D005829 4.9e-16 89.4 108 44.4
FAN23G2906 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.1e-15 86.7 142 37.3
FAN09G3389 Fragaria x ananassa HOM05D004646 ORTHO05D005829 9.2e-15 85.1 103 43.7
PSO767G0002 Papaver somniferum HOM05D004646 ORTHO05D005829 5.9e-14 82.4 255 27.5
FAN09G2429 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.1e-12 78.2 110 40.9
PSO384G3479 Papaver somniferum HOM05D004646 ORTHO05D005829 1.5e-12 77.8 231 27.7
CDE04G3684 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 3.3e-12 76.6 74 50.0
FAN04G0237 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.3e-12 76.6 110 40.0
FAN12G3236 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.3e-12 76.6 110 40.0
FAN21G2061 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.3e-12 76.6 110 40.0
FAN17G1446 Fragaria x ananassa HOM05D004646 ORTHO05D005829 4.3e-12 76.3 110 40.0
MBI19_g09320_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 5.6e-12 75.9 165 34.5
PRCOL_00002500 Prasinoderma coloniale HOM05D004646 ORTHO05D005829 5.6e-12 75.9 202 30.7
Cre06.g310050 Chlamydomonas reinhardtii HOM05D004646 ORTHO05D005829 3.7e-08 63.2 205 29.3
CANSAT21G2538 Cannabis sativa HOM05D003816 ORTHO05D004410 1.8e-07 60.8 199 27.1
SHI07095 Sapria himalayana HOM05D003816 ORTHO05D004410 4.1e-07 59.7 219 26.9
AUR62010771 Chenopodium quinoa HOM05D003816 ORTHO05D004410 5.4e-07 59.3 196 26.5
AUR62019773 Chenopodium quinoa HOM05D003816 ORTHO05D004410 5.4e-07 59.3 196 26.5
Sed0000969 Sechium edule HOM05D003816 ORTHO05D004410 7.0e-07 58.9 221 25.3
TWI15G0065 Tripterygium wilfordii HOM05D003816 ORTHO05D004410 1.2e-06 58.2 284 25.7
Lj2P175T52 Lonicera japonica HOM05D003816 ORTHO05D004410 2.7e-06 57.0 197 25.9
Hund14255 Selenicereus undatus HOM05D003816 ORTHO05D004410 2.7e-06 57.0 196 27.6
Lj5g0016706 Lotus japonicus HOM05D003816 ORTHO05D004410 3.5e-06 56.6 266 25.6
Manes.02G015300 Manihot esculenta HOM05D003816 ORTHO05D004410 7.8e-06 55.5 199 24.6


User provided reference genes

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