Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 2817.3 1489 100.0
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 2802.3 1489 99.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 0.0e+00 1949.1 1503 73.1
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 0.0e+00 1939.5 1543 71.6
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1877.4 1506 70.8
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1359.0 1488 56.4
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 0.0e+00 1295.8 1501 55.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 0.0e+00 1288.5 1463 54.8
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 0.0e+00 1283.5 1459 55.7
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 0.0e+00 1283.5 1511 54.8
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1263.1 1543 51.9
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 0.0e+00 1258.4 1489 54.5
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 0.0e+00 1236.1 1466 53.3
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 0.0e+00 1227.2 1516 53.0
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1218.4 1523 52.4
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 0.0e+00 1218.0 1446 53.9
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 0.0e+00 1215.3 1523 52.1
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1204.9 1523 51.9
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 0.0e+00 1189.1 1454 52.5
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1178.7 1366 53.6
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 1178.3 1486 50.6
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 1172.9 1500 50.1
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1172.1 995 65.6
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 0.0e+00 1171.0 1512 51.4
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1169.8 1543 51.7
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 0.0e+00 1164.4 1447 50.4
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 0.0e+00 1161.0 1501 51.0
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 0.0e+00 1148.7 1469 51.5
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 0.0e+00 1138.3 1503 51.1
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 0.0e+00 1135.2 1503 50.8
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 0.0e+00 1132.5 1500 49.5
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 0.0e+00 1131.3 1475 50.6
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 0.0e+00 1126.7 1478 48.2
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 0.0e+00 1122.5 1502 50.1
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 0.0e+00 1111.3 1449 50.4
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 0.0e+00 1107.8 1485 50.0
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 0.0e+00 1081.6 1401 49.8
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 4.2e-308 1062.0 1445 48.4
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 4.0e-306 1055.4 1470 47.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 8.2e-304 1047.7 1301 50.8
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 6.5e-301 1038.1 1418 48.4
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 1.5e-300 1036.9 1448 48.8
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.7e-293 1013.4 1351 49.6
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 2.9e-293 1012.7 1300 50.0
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 8.9e-290 1001.1 1325 49.5
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 7.5e-289 998.0 1478 45.7
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 3.7e-288 995.7 1454 45.7
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 4.1e-287 992.3 1253 53.0
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.2e-286 990.7 1463 46.6
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 3.9e-285 985.7 1294 50.2
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 2.3e-282 976.5 1341 48.2
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.0e-281 973.4 1349 48.0
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.1e-276 957.6 1214 52.2
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 3.4e-273 946.0 1234 51.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.7e-270 936.4 1244 51.1
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.4e-266 924.1 1454 45.6
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 8.9e-266 921.4 1534 43.8
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 8.3e-264 914.8 1464 45.4
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 6.6e-261 905.2 1505 43.5
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 3.5e-246 856.3 1470 42.0
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 7.8e-246 855.1 1338 47.5
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 2.3e-245 853.6 1333 46.0
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 2.6e-241 840.1 1479 43.0
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.3e-240 837.8 1516 41.0
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.2e-238 831.2 1455 42.6
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 4.6e-238 829.3 1409 42.5
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.0e-233 813.9 1416 42.6
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.0e-232 811.6 1316 44.6
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 6.5e-232 808.9 1429 42.3
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.7e-228 795.8 1384 43.0
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 3.1e-226 790.0 1292 44.5
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 4.5e-217 759.6 1391 41.3
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.7e-203 714.5 1475 37.8
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.0e-201 707.6 1391 41.0
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 3.9e-197 693.3 1326 40.7
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.1e-194 685.3 1443 39.5
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.1e-194 683.7 1470 37.3
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 4.1e-194 683.3 1443 40.1
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.1e-191 675.2 1500 38.4
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 3.6e-190 670.2 1489 38.5
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 6.1e-190 669.5 1273 42.3
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 9.8e-188 662.1 1433 39.6
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 3.5e-185 653.7 1340 37.8
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 2.9e-184 650.6 1441 40.0
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 2.7e-182 644.0 1444 39.2
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 5.2e-181 639.8 1431 38.2
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 2.6e-180 637.5 1481 36.2
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.4e-180 637.1 1202 41.4
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 1.0e-176 625.5 1482 36.2
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 3.6e-174 617.1 1300 38.8
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 8.6e-168 595.9 1494 36.2
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.0e-165 589.0 1428 36.8
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 5.2e-165 586.6 695 57.3
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.6e-164 584.3 1411 37.3
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 2.6e-164 584.3 1432 36.5
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 2.6e-164 584.3 1432 36.5
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.9e-163 580.1 667 52.6
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.1e-162 578.9 795 47.4
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 3.5e-161 573.9 573 59.3
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.1e-153 548.1 886 43.5
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 5.1e-152 543.5 1251 36.9
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 6.2e-150 536.6 1217 35.9
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.3e-143 514.2 623 53.1
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 4.7e-142 510.4 1270 35.7
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 6.8e-141 506.5 675 56.0
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 3.3e-135 487.6 608 51.3
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 8.1e-118 429.9 837 38.4
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.0e-112 411.4 1259 32.0
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 9.6e-111 406.4 941 35.3
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.4e-101 375.9 477 47.8
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.7e-97 361.7 332 59.9
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 3.3e-95 354.8 537 45.6
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.4e-93 348.6 607 40.5
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 4.5e-92 344.4 731 37.9
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 5.5e-90 337.4 498 48.4
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 7.9e-89 333.6 404 53.7
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 1.7e-86 325.9 786 36.3
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.2e-86 325.5 650 40.8
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 6.3e-86 323.9 497 42.9
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 2.2e-83 315.5 298 58.4
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.5e-82 312.8 310 70.3
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 9.1e-77 293.5 684 38.0
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 1.3e-59 236.5 368 41.0
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 4.9e-54 218.0 236 53.8
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 2.3e-51 209.1 536 33.4
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.1e-50 206.8 539 33.2
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 8.9e-48 197.2 256 46.9
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.2e-47 196.8 1000 27.4
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.3e-43 183.3 153 57.5
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 1.5e-42 179.9 278 52.2
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 1.9e-42 179.5 306 41.5
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.3e-42 178.7 722 27.8
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 4.9e-38 164.9 530 33.0
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 8.3e-38 164.1 539 32.8
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 9.2e-37 160.6 245 41.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.2e-36 160.2 495 31.1
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 4.9e-22 111.7 646 25.5
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.6e-17 96.7 536 26.5
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.8e-17 95.1 81 60.5
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.2e-17 94.7 125 49.6
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.8e-15 88.2 115 60.9
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.8e-14 85.5 259 30.9
RcHm_v2.0_Chr5g0003041 Rosa chinensis HOM05D002890 ORTHO05D005855 1.5e-10 73.6 188 45.2
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 7.4e-10 71.2 136 42.6
RcHm_v2.0_Chr5g0003151 Rosa chinensis HOM05D002890 ORTHO05D005855 1.6e-09 70.1 188 44.1
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 2.1e-09 69.7 55 61.8
RcHm_v2.0_Chr5g0003101 Rosa chinensis HOM05D002890 ORTHO05D005855 3.6e-09 68.9 188 43.1
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 3.1e-08 65.9 64 57.8
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 3.1e-08 65.9 64 57.8


User provided reference genes

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