Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 7.2e-130 467.2 232 100.0
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 7.2e-130 467.2 232 100.0
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 5.5e-114 414.5 232 87.9
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 8.0e-113 410.6 232 87.9
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 8.8e-112 407.1 232 85.3
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 9.7e-111 403.7 231 87.4
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 2.4e-109 399.1 231 84.4
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 3.1e-109 398.7 231 84.0
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 7.0e-109 397.5 231 86.1
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 1.7e-107 392.9 231 82.7
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 1.1e-106 390.2 210 91.0
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 1.5e-106 389.8 228 83.3
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 5.5e-106 387.9 228 83.3
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 5.5e-106 387.9 234 82.5
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 2.7e-105 385.6 232 82.8
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 3.6e-105 385.2 231 83.1
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 8.0e-105 384.0 233 83.3
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 8.0e-105 384.0 233 83.7
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 8.0e-105 384.0 229 83.0
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 8.0e-105 384.0 229 82.5
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.4e-104 383.3 233 83.7
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 2.3e-104 382.5 230 82.6
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 3.0e-104 382.1 229 82.5
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 3.0e-104 382.1 232 82.8
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 5.2e-104 381.3 228 82.5
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 6.8e-104 380.9 223 85.2
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 1.5e-103 379.8 228 80.7
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 3.4e-103 378.6 228 82.0
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 5.7e-103 377.9 228 81.6
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 7.5e-103 377.5 232 79.3
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 7.5e-103 377.5 227 80.6
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 1.7e-102 376.3 224 83.0
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 1.7e-102 376.3 227 82.4
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 2.2e-102 375.9 230 82.2
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 2.8e-102 375.6 226 82.7
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 2.8e-102 375.6 230 81.3
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 3.7e-102 375.2 230 81.3
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 3.7e-102 375.2 228 82.5
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 3.7e-102 375.2 218 85.3
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 2.4e-101 372.5 232 80.6
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 3.1e-101 372.1 219 84.0
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 3.1e-101 372.1 219 84.0
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 3.1e-101 372.1 229 79.0
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 7.0e-101 370.9 218 84.4
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 7.0e-101 370.9 229 80.3
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 1.6e-100 369.8 234 79.5
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 1.6e-100 369.8 228 80.3
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 1.6e-100 369.8 231 79.2
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 1.6e-100 369.8 232 80.6
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 3.5e-100 368.6 231 79.2
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 5.9e-100 367.9 214 85.0
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.0e-99 367.1 214 84.6
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 1.3e-99 366.7 223 81.2
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 1.3e-99 366.7 225 81.8
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 2.9e-99 365.5 231 78.8
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 3.8e-99 365.2 229 77.7
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 5.0e-99 364.8 214 84.6
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 6.5e-99 364.4 214 83.6
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 8.6e-99 364.0 234 76.9
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 8.6e-99 364.0 228 79.4
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 1.5e-98 363.2 230 80.0
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 1.9e-98 362.8 230 79.1
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 1.9e-98 362.8 212 84.4
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 4.2e-98 361.7 230 77.0
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 2.1e-97 359.4 234 76.5
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 3.6e-97 358.6 223 82.1
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 4.7e-97 358.2 214 81.8
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 8.0e-97 357.5 228 75.4
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 1.0e-96 357.1 227 76.2
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 1.8e-96 356.3 212 84.0
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 5.2e-96 354.8 216 80.6
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 6.8e-96 354.4 229 75.5
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 6.8e-96 354.4 214 81.3
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 8.8e-96 354.0 210 81.9
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 8.8e-96 354.0 210 81.9
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 3.4e-95 352.1 223 78.5
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 5.7e-95 351.3 227 78.4
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 5.7e-95 351.3 225 76.4
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 1.3e-94 350.1 225 76.0
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 1.3e-94 350.1 228 74.6
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 1.7e-94 349.7 225 76.0
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 1.7e-94 349.7 228 75.0
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 2.2e-94 349.4 228 77.6
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 2.8e-94 349.0 225 76.9
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.7e-94 348.6 230 78.3
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 4.9e-94 348.2 223 76.2
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 4.9e-94 348.2 225 76.0
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 6.3e-94 347.8 224 75.9
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 1.4e-93 346.7 225 76.0
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.8e-93 346.3 227 73.6
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 2.4e-93 345.9 211 79.1
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 2.4e-93 345.9 226 77.9
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 2.4e-93 345.9 230 77.4
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 9.2e-93 344.0 232 75.4
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 1.6e-92 343.2 212 81.1
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 5.9e-92 341.3 224 74.1
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 7.8e-92 340.9 229 73.8
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 1.3e-91 340.1 229 75.5
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 1.7e-91 339.7 230 73.9
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 2.3e-91 339.3 259 69.5
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 1.1e-90 337.0 202 82.2
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 7.3e-90 334.3 208 77.4
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 1.6e-89 333.2 219 74.9
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 2.8e-89 332.4 225 71.1
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 2.6e-87 325.9 291 60.5
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 4.4e-87 325.1 211 76.3
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 2.4e-85 319.3 211 73.9
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 3.2e-85 318.9 218 75.2
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 9.2e-85 317.4 209 72.2
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 4.6e-84 315.1 203 74.9
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 4.6e-84 315.1 203 74.9
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 5.9e-84 314.7 210 77.6
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 3.9e-83 312.0 228 68.4
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 5.2e-80 301.6 206 69.4
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 2.0e-79 299.7 219 71.2
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.0e-79 299.7 314 54.1
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 5.6e-74 281.6 174 81.0
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 7.3e-74 281.2 175 81.1
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 8.1e-73 277.7 175 80.0
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 2.3e-72 276.2 171 78.4
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 1.5e-71 273.5 167 77.8
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.4e-71 271.9 175 76.0
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 6.2e-65 251.5 214 55.1
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 2.4e-64 249.6 225 52.0
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 2.6e-63 246.1 228 58.3
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 2.9e-62 242.7 189 62.4
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.4e-61 239.6 210 60.0
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 5.4e-61 238.4 209 55.0
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.9e-59 232.3 204 62.7
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.5e-58 230.3 175 68.0
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 1.3e-54 217.2 230 52.6
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 8.4e-54 214.5 210 55.7
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 1.1e-50 204.1 207 47.3
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.3e-50 202.6 117 82.9
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 3.6e-49 199.1 156 64.1
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 9.3e-45 184.5 175 57.1
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.8e-41 172.9 116 76.7
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 1.8e-40 170.2 131 62.6
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 1.8e-40 170.2 131 62.6
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 1.2e-39 167.5 201 44.3
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 2.0e-39 166.8 97 85.6
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 2.6e-39 166.4 114 73.7
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 2.4e-37 159.8 106 73.6
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.5e-37 158.7 118 70.3
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 8.2e-33 144.8 191 44.0
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 3.8e-30 136.0 211 42.7
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 7.1e-29 131.7 90 71.1
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 1.1e-26 124.4 113 62.8
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 1.2e-23 114.4 213 39.4
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 2.6e-15 86.7 62 72.6
Cre05.g234657 Chlamydomonas reinhardtii HOM05D004609 ORTHO05D005537 1.7e-14 84.0 185 34.6
AUR62017074 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.9e-13 80.5 104 45.2
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 6.7e-11 72.0 208 28.4
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 6.7e-11 72.0 227 30.4
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 2.0e-10 70.5 202 30.2
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 1.3e-09 67.8 202 29.7
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 2.8e-09 66.6 219 27.9
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 6.3e-09 65.5 210 29.0
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 1.1e-08 64.7 201 29.9
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 1.8e-08 63.9 216 30.1
Ca_29294_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 2.4e-08 63.5 132 31.8
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 2.4e-08 63.5 209 28.2
PRCOL_00005540 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 2.4e-08 63.5 140 30.0
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 4.1e-08 62.8 211 27.5
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 4.1e-08 62.8 202 29.2
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 7.0e-08 62.0 233 26.6
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 2.6e-07 60.1 213 28.6
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 3.4e-07 59.7 210 25.7
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 2.2e-06 57.0 241 25.7


User provided reference genes

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