Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p063704 Quercus lobata HOM05D000005 ORTHO05D010574 5.4e-187 657.5 332 100.0
QL03p068834 Quercus lobata HOM05D000005 ORTHO05D010574 2.7e-122 442.6 308 79.5
QL03p063806 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-116 423.7 308 77.6
Cfa011656 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.0e-52 211.5 245 46.9
Cfa008053 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.6e-37 161.0 205 45.9
QL04p027112 Quercus lobata HOM05D000005 ORTHO05D010574 1.7e-31 141.0 219 36.5
QL04p027472 Quercus lobata HOM05D000005 ORTHO05D010574 1.9e-30 137.5 218 35.3
Prupe.7G065400 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-29 133.7 196 40.8
Haze_17731 Corylus avellana HOM05D000005 ORTHO05D010574 4.6e-29 132.9 181 39.2
Cfa018270 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.3e-27 126.7 193 37.8
MD05G1002200 Malus domestica HOM05D000005 ORTHO05D010574 3.6e-26 123.2 176 38.1
MD12G1068700 Malus domestica HOM05D000005 ORTHO05D010574 2.0e-24 117.5 167 40.7
Haze_17813 Corylus avellana HOM05D000005 ORTHO05D010574 2.6e-24 117.1 225 35.6
Haze_17817 Corylus avellana HOM05D000005 ORTHO05D010574 2.6e-24 117.1 223 34.1
CANSAT01G0874 Cannabis sativa HOM05D000005 ORTHO05D000012 1.7e-23 114.4 191 34.0
RcHm_v2.0_Chr6g0272741 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-23 114.4 174 38.5
Haze_17730 Corylus avellana HOM05D000005 ORTHO05D010574 2.2e-23 114.0 203 34.5
RcHm_v2.0_Chr3g0465111 Rosa chinensis HOM05D000005 ORTHO05D001748 1.9e-22 110.9 174 34.5
QL04p027745 Quercus lobata HOM05D000005 ORTHO05D010574 2.4e-22 110.5 191 32.5
Cfa011658 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.2e-21 108.2 207 33.8
Haze_17828 Corylus avellana HOM05D000005 ORTHO05D010574 1.3e-20 104.8 197 31.5
Haze_24261 Corylus avellana HOM05D000005 ORTHO05D010574 5.1e-20 102.8 200 32.0
Haze_17819 Corylus avellana HOM05D000005 ORTHO05D010574 1.5e-19 101.3 173 33.5
Haze_17818 Corylus avellana HOM05D000005 ORTHO05D010574 1.9e-19 100.9 175 34.9
Cfa018268 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.3e-19 100.1 228 29.4
CsaV3_5G039740 Cucumis sativus L. HOM05D000005 ORTHO05D014598 4.3e-19 99.8 158 34.8
Prupe.8G005400 Prunus persica HOM05D000005 ORTHO05D000012 9.6e-19 98.6 167 34.1
MD17G1192900 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-18 98.2 166 31.3
RcHm_v2.0_Chr6g0251631 Rosa chinensis HOM05D000005 ORTHO05D012233 1.3e-18 98.2 196 31.6
ClCG08G001330 Citrullus lanatus HOM05D000005 ORTHO05D010574 2.1e-18 97.4 172 31.4
MELO3C022150.2 Cucumis melo HOM05D000005 ORTHO05D014598 2.1e-18 97.4 155 33.5
RcHm_v2.0_Chr7g0223661 Rosa chinensis HOM05D000005 ORTHO05D000012 2.8e-18 97.1 156 32.7
MD05G1002400 Malus domestica HOM05D000005 ORTHO05D012870 4.8e-18 96.3 148 34.5
Cfa011655 Carpinus fangiana HOM05D000005 ORTHO05D010574 8.1e-18 95.5 207 30.9
FAN06G4743 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.1e-18 95.5 154 31.8
CANSAT78G1597 Cannabis sativa HOM05D000005 ORTHO05D010574 1.4e-17 94.7 191 32.5
ClCG08G001360 Citrullus lanatus HOM05D000005 ORTHO05D010574 1.4e-17 94.7 150 31.3
QL04p027198 Quercus lobata HOM05D000005 ORTHO05D010574 1.4e-17 94.7 173 30.6
RcHm_v2.0_Chr1g0342551 Rosa chinensis HOM05D000005 ORTHO05D010574 1.4e-17 94.7 210 31.0
ClCG08G001380 Citrullus lanatus HOM05D000005 ORTHO05D014598 2.4e-17 94.0 134 36.6
QL04p027395 Quercus lobata HOM05D000083 ORTHO05D001732 2.4e-17 94.0 226 27.0
Sed0026450 Sechium edule HOM05D000005 ORTHO05D014598 2.4e-17 94.0 208 30.3
QL05p082212 Quercus lobata HOM05D000005 ORTHO05D010574 3.1e-17 93.6 165 33.9
Sed0009572 Sechium edule HOM05D000005 ORTHO05D014598 4.0e-17 93.2 192 27.1
MELO3C025516.2 Cucumis melo HOM05D000005 ORTHO05D014598 5.3e-17 92.8 135 34.8
MELO3C022152.2 Cucumis melo HOM05D000005 ORTHO05D014598 6.9e-17 92.4 198 28.3
CsaV3_5G039730 Cucumis sativus L. HOM05D000005 ORTHO05D014598 1.2e-16 91.7 134 32.8
QL04p027735 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-16 90.9 179 32.4
QL09p004668 Quercus lobata HOM05D000005 ORTHO05D010574 2.0e-16 90.9 214 31.3
QL04p027246 Quercus lobata HOM05D000005 ORTHO05D000012 3.4e-16 90.1 182 30.8
MELO3C022148.2 Cucumis melo HOM05D000005 ORTHO05D014598 9.9e-16 88.6 210 26.7
RcHm_v2.0_Chr6g0251641 Rosa chinensis HOM05D000005 ORTHO05D000012 9.9e-16 88.6 179 32.4
RcHm_v2.0_Chr4g0429711 Rosa chinensis HOM05D000005 ORTHO05D010574 1.3e-15 88.2 178 34.3
QL04p028127 Quercus lobata HOM05D000005 ORTHO05D010574 2.9e-15 87.0 214 29.9
QL04p026662 Quercus lobata HOM05D000005 ORTHO05D000012 4.9e-15 86.3 183 31.1
QL04p027378 Quercus lobata HOM05D000005 ORTHO05D000012 4.9e-15 86.3 183 31.1
RcHm_v2.0_Chr4g0429701 Rosa chinensis HOM05D000005 ORTHO05D000012 4.9e-15 86.3 184 33.7
FAN15G3532 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.4e-15 85.5 176 30.1
QL09p003167 Quercus lobata HOM05D000005 ORTHO05D010574 3.2e-14 83.6 181 28.7
Prupe.8G005600 Prunus persica HOM05D000005 ORTHO05D000012 4.2e-14 83.2 174 29.9
FvH4_3g33030 Fragaria vesca HOM05D000005 ORTHO05D000012 5.4e-14 82.8 188 33.5
Cfa018269 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.2e-13 81.6 168 31.5
QL09p004694 Quercus lobata HOM05D000005 ORTHO05D010574 3.5e-13 80.1 158 30.4
RcHm_v2.0_Chr1g0323501 Rosa chinensis HOM05D000005 ORTHO05D001748 4.6e-13 79.7 261 28.7
FAN11G0630 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.0e-12 78.6 188 33.0
RcHm_v2.0_Chr1g0317981 Rosa chinensis HOM05D000005 ORTHO05D010574 1.3e-12 78.2 172 30.8
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 2.3e-12 77.4 232 30.2
QL04p027965 Quercus lobata HOM05D000005 ORTHO05D010574 3.0e-12 77.0 218 27.1
QL04p028099 Quercus lobata HOM05D000005 ORTHO05D010574 6.7e-12 75.9 172 31.4
RcHm_v2.0_Chr1g0322491 Rosa chinensis HOM05D000005 ORTHO05D000012 6.7e-12 75.9 232 29.7
Prupe.8G005500 Prunus persica HOM05D000005 ORTHO05D000012 1.5e-11 74.7 216 27.3
QL04p027572 Quercus lobata HOM05D000056 ORTHO05D000019 1.9e-11 74.3 189 26.5
RcHm_v2.0_Chr1g0322041 Rosa chinensis HOM05D000005 ORTHO05D000012 1.9e-11 74.3 232 29.7
RcHm_v2.0_Chr1g0322651 Rosa chinensis HOM05D000005 ORTHO05D000012 1.9e-11 74.3 230 29.1
Cfa011657 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.3e-11 73.6 201 26.4
Cfa018271 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.3e-11 73.6 153 31.4
RcHm_v2.0_Chr1g0323161 Rosa chinensis HOM05D000005 ORTHO05D000012 3.3e-11 73.6 232 29.3
CiPaw.16G015500 Carya illinoinensis HOM05D000005 ORTHO05D010574 4.3e-11 73.2 148 31.1
FAN27G2200 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.6e-11 72.8 263 28.9
RcHm_v2.0_Chr1g0322781 Rosa chinensis HOM05D000005 ORTHO05D000012 5.6e-11 72.8 232 29.3
RcHm_v2.0_Chr5g0060391 Rosa chinensis HOM05D000005 ORTHO05D010574 5.6e-11 72.8 171 30.4
RcHm_v2.0_Chr1g0322941 Rosa chinensis HOM05D000005 ORTHO05D000012 7.4e-11 72.4 263 28.9
RcHm_v2.0_Chr1g0323411 Rosa chinensis HOM05D000005 ORTHO05D001748 9.6e-11 72.0 183 31.1
QL09p004704 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-10 71.6 173 31.2
RcHm_v2.0_Chr1g0321301 Rosa chinensis HOM05D000005 ORTHO05D001748 1.3e-10 71.6 226 28.8
FAN04G2194 Fragaria x ananassa HOM05D000005 ORTHO05D012870 1.6e-10 71.2 147 29.3
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 1.6e-10 71.2 263 27.8
RcHm_v2.0_Chr2g0106511 Rosa chinensis HOM05D000005 ORTHO05D012233 1.6e-10 71.2 230 28.7
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 2.1e-10 70.9 263 28.1
RcHm_v2.0_Chr2g0106541 Rosa chinensis HOM05D000005 ORTHO05D012233 8.1e-10 68.9 179 29.6
FvH4_2g00570 Fragaria vesca HOM05D000005 ORTHO05D000012 1.1e-09 68.6 217 29.0
QL09p003267 Quercus lobata HOM05D000005 ORTHO05D010574 1.1e-09 68.6 154 29.9
FAN28G1466 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.4e-09 68.2 227 26.4
Sed0011506 Sechium edule HOM05D000005 ORTHO05D019022 1.4e-09 68.2 184 29.3
Cfa012834 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.8e-09 67.8 150 30.7
RcHm_v2.0_Chr1g0319431 Rosa chinensis HOM05D000005 ORTHO05D001748 1.8e-09 67.8 224 29.0
FAN24G3397 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.4e-09 67.4 263 28.1
QL09p003102 Quercus lobata HOM05D000005 ORTHO05D010574 2.4e-09 67.4 197 26.9
RcHm_v2.0_Chr1g0322961 Rosa chinensis HOM05D000005 ORTHO05D000012 3.1e-09 67.0 232 28.0
QL04p027067 Quercus lobata HOM05D000083 ORTHO05D001732 4.0e-09 66.6 165 26.7
RcHm_v2.0_Chr2g0124621 Rosa chinensis HOM05D000005 ORTHO05D012233 4.0e-09 66.6 207 27.5
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 6.9e-09 65.9 205 27.8
FAN19G0289 Fragaria x ananassa HOM05D000005 ORTHO05D012233 9.0e-09 65.5 180 24.4
QL05p082177 Quercus lobata HOM05D000005 ORTHO05D000012 9.0e-09 65.5 156 31.4
RcHm_v2.0_Chr1g0323761 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-08 65.1 269 26.4
QL09p003516 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-08 64.3 254 25.2
FvH4_1g16650 Fragaria vesca HOM05D000005 ORTHO05D012233 2.6e-08 63.9 181 24.3
CANSAT78G2183 Cannabis sativa HOM05D000005 ORTHO05D010574 3.4e-08 63.5 176 25.0
QL04p027649 Quercus lobata HOM05D000005 ORTHO05D010574 3.4e-08 63.5 172 27.3
RcHm_v2.0_Chr6g0250931 Rosa chinensis HOM05D000005 ORTHO05D000012 3.4e-08 63.5 232 29.3
Sed0026698 Sechium edule HOM05D000005 ORTHO05D019022 3.4e-08 63.5 153 28.8
RcHm_v2.0_Chr6g0250621 Rosa chinensis HOM05D000005 ORTHO05D000012 4.5e-08 63.2 263 27.8
RcHm_v2.0_Chr6g0250871 Rosa chinensis HOM05D000005 ORTHO05D000012 5.8e-08 62.8 266 27.1
Sed0004955 Sechium edule HOM05D000005 ORTHO05D019022 5.8e-08 62.8 209 27.3
RcHm_v2.0_Chr5g0061111 Rosa chinensis HOM05D000005 ORTHO05D010574 9.9e-08 62.0 165 29.7
AL8G13750 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.3e-07 61.6 178 25.8
FvH4_1g16630 Fragaria vesca HOM05D000005 ORTHO05D012233 1.7e-07 61.2 180 23.9
FAN13G2383 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.2e-07 60.8 147 27.2
GSVIVG01034809001 Vitis vinifera HOM05D000005 ORTHO05D011281 2.2e-07 60.8 214 28.0
QL11p003594 Quercus lobata HOM05D000005 ORTHO05D000012 3.8e-07 60.1 225 28.0
RcHm_v2.0_Chr7g0240641 Rosa chinensis HOM05D000005 ORTHO05D012870 3.8e-07 60.1 150 27.3
GSVIVG01025878001 Vitis vinifera HOM05D000005 ORTHO05D000012 3.8e-07 60.1 148 31.1
GSVIVG01034805001 Vitis vinifera HOM05D000005 ORTHO05D011281 3.8e-07 60.1 214 28.0
Prupe.7G065500 Prunus persica HOM05D000005 ORTHO05D010574 4.9e-07 59.7 173 28.3
RcHm_v2.0_Chr1g0322421 Rosa chinensis HOM05D000005 ORTHO05D001748 8.4e-07 58.9 229 27.1
AL7G34080 Arabidopsis lyrata HOM05D004848 ORTHO05D006859 1.1e-06 58.5 182 30.2
RcHm_v2.0_Chr5g0055671 Rosa chinensis HOM05D000005 ORTHO05D000012 1.1e-06 58.5 265 25.7
Sed0017103 Sechium edule HOM05D000005 ORTHO05D019022 1.4e-06 58.2 155 26.5
QL93p2002_0022 Quercus lobata HOM05D000005 ORTHO05D000012 1.9e-06 57.8 228 28.1
FvH4_1g16620 Fragaria vesca HOM05D000005 ORTHO05D012233 3.2e-06 57.0 182 20.9
FAN04G0619 Fragaria x ananassa HOM05D000005 ORTHO05D001748 3.2e-06 57.0 153 26.8
FAN19G0622 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.2e-06 57.0 182 20.9
RcHm_v2.0_Chr2g0101061 Rosa chinensis HOM05D000005 ORTHO05D000012 3.2e-06 57.0 229 25.8
QL09p031857 Quercus lobata HOM05D000005 ORTHO05D000012 4.2e-06 56.6 205 24.9
FAN23G1303 Fragaria x ananassa HOM05D000005 ORTHO05D012233 5.5e-06 56.2 182 24.2
QL05p019911 Quercus lobata HOM05D000005 ORTHO05D000294 5.5e-06 56.2 150 27.3
RcHm_v2.0_Chr6g0250551 Rosa chinensis HOM05D000005 ORTHO05D000012 5.5e-06 56.2 253 26.5
Thhalv10027412m.g Eutrema salsugineum HOM05D000005 ORTHO05D018471 7.1e-06 55.8 163 30.7
QL03p008616 Quercus lobata HOM05D000005 ORTHO05D001748 7.1e-06 55.8 234 26.5
QL05p005294 Quercus lobata HOM05D000005 ORTHO05D013544 7.1e-06 55.8 158 28.5
Ciclev10024379m.g Citrus clementina HOM05D000005 ORTHO05D000012 9.3e-06 55.5 99 31.3
FAN23G0394 Fragaria x ananassa HOM05D000005 ORTHO05D012233 9.3e-06 55.5 180 23.3
QL09p052750 Quercus lobata HOM05D000005 ORTHO05D000012 9.3e-06 55.5 205 23.4


User provided reference genes

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