Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 2819.3 1489 100.0
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 2803.1 1489 99.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 0.0e+00 1962.2 1503 73.4
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 0.0e+00 1952.6 1543 71.9
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1885.9 1506 71.1
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1358.6 1488 56.5
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 0.0e+00 1298.5 1501 55.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 0.0e+00 1291.2 1463 54.8
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 0.0e+00 1290.8 1511 54.9
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 0.0e+00 1285.8 1459 55.7
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1266.5 1543 52.0
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 0.0e+00 1261.1 1489 54.5
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 0.0e+00 1234.9 1466 53.2
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 0.0e+00 1233.0 1516 53.0
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1223.4 1523 52.5
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 0.0e+00 1221.5 1446 54.0
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 0.0e+00 1220.7 1523 52.2
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1210.3 1523 52.0
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 0.0e+00 1189.1 1454 52.5
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1184.9 1366 53.7
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1183.3 995 66.0
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 1180.2 1486 50.6
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 0.0e+00 1176.4 1512 51.5
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1176.0 1543 51.8
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 1171.8 1500 50.1
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 0.0e+00 1171.0 1447 50.4
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 0.0e+00 1161.0 1501 50.9
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 0.0e+00 1149.8 1469 51.5
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 0.0e+00 1144.0 1503 51.2
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 0.0e+00 1140.2 1503 50.7
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 0.0e+00 1139.0 1500 49.5
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 0.0e+00 1133.2 1478 48.2
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 0.0e+00 1132.9 1475 50.6
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 0.0e+00 1127.9 1502 50.1
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 0.0e+00 1122.5 1449 50.6
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 0.0e+00 1118.6 1485 50.2
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 0.0e+00 1084.7 1406 49.9
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 5.5e-308 1061.6 1445 48.4
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 4.7e-307 1058.5 1470 47.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 4.4e-305 1052.0 1301 50.9
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 7.7e-302 1041.2 1418 48.6
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 7.2e-300 1034.6 1448 48.6
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.8e-296 1021.9 1351 49.7
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 9.1e-295 1017.7 1300 50.2
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 4.4e-289 998.8 1478 45.7
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 5.7e-289 998.4 1325 49.4
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 9.8e-289 997.7 1253 53.1
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 8.3e-288 994.6 1454 45.7
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 8.3e-288 994.6 1463 46.6
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 2.0e-286 989.9 1294 50.3
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.4e-282 977.2 1341 48.2
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 3.1e-282 976.1 1349 48.0
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 6.6e-277 958.4 1214 52.2
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 2.0e-273 946.8 1234 51.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 1.6e-270 937.2 1244 51.1
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 3.3e-268 929.5 1472 45.4
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 2.8e-267 926.4 1536 43.8
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 7.5e-265 918.3 1465 45.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.6e-262 910.6 1508 43.7
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.1e-247 861.3 1470 42.1
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 5.4e-247 859.0 1338 47.5
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.2e-246 857.8 1333 46.1
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 9.0e-242 841.6 1495 41.2
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.3e-240 837.8 1479 42.9
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 4.9e-240 835.9 1409 42.7
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 6.4e-240 835.5 1462 42.5
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 3.7e-235 819.7 1416 42.7
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-233 814.7 1316 44.7
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.5e-233 814.3 1429 42.3
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.1e-229 799.3 1384 43.1
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 2.1e-227 793.9 1292 44.6
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.1e-218 765.0 1391 41.5
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 5.7e-204 716.1 1482 37.4
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 4.8e-203 713.0 1391 41.1
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 6.1e-198 696.0 1326 40.7
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 3.0e-197 693.7 1443 40.1
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 5.7e-196 689.5 1443 40.2
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 4.8e-195 686.4 1477 37.1
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.7e-192 677.9 1498 38.4
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.1e-191 675.2 1472 38.7
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 2.1e-190 671.0 1273 42.3
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 3.6e-190 670.2 1433 39.8
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 8.3e-187 659.1 1340 38.0
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 5.4e-186 656.4 1441 40.1
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 2.2e-184 651.0 1444 39.5
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 2.5e-183 647.5 1431 38.4
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.8e-181 639.0 1202 41.4
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 2.6e-180 637.5 1481 36.2
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 5.7e-180 636.3 1482 36.3
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 5.5e-175 619.8 1300 38.8
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 2.3e-168 597.8 1493 36.1
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.1e-167 595.5 1425 37.1
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.9e-167 594.7 1311 38.6
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.6e-166 590.5 1429 36.7
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 3.6e-166 590.5 1429 36.7
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 6.2e-166 589.7 667 53.1
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.8e-165 588.2 695 57.4
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 3.2e-162 577.4 796 47.1
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 3.5e-161 573.9 573 59.3
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-154 552.0 886 43.6
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.2e-153 548.9 1251 37.1
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.3e-151 540.4 1217 36.0
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.0e-144 519.2 623 53.5
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.3e-144 518.1 1270 35.8
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 2.4e-141 508.1 675 56.1
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 1.7e-136 491.9 608 51.5
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 7.4e-119 433.3 837 38.5
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.4e-114 419.1 1259 32.2
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 8.7e-112 409.8 941 35.4
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 4.8e-102 377.5 477 48.0
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.2e-97 362.8 332 60.2
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.0e-96 359.8 537 46.0
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 9.7e-95 353.2 607 40.7
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 4.1e-93 347.8 731 38.0
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-90 339.0 498 48.6
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 7.9e-89 333.6 404 53.7
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 2.0e-87 328.9 497 43.3
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 4.4e-87 327.8 786 36.3
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 9.7e-87 326.6 650 40.9
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.0e-83 316.6 298 58.7
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.5e-82 312.8 310 70.3
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 2.0e-76 292.4 684 38.0
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 2.9e-59 235.3 368 40.8
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.7e-54 219.5 236 54.2
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 3.0e-51 208.8 536 33.6
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.5e-50 206.5 539 33.4
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.0e-48 200.3 1000 27.5
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 8.9e-48 197.2 256 46.9
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.2e-44 186.8 153 58.2
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 1.5e-42 179.9 278 52.2
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.5e-42 179.1 722 27.8
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 3.3e-42 178.7 306 41.2
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 5.8e-39 167.9 542 33.0
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 7.5e-39 167.5 530 33.2
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 4.1e-37 161.8 495 31.3
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.2e-36 160.2 245 41.2
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.1e-21 110.5 646 25.5
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.5e-18 99.4 536 26.7
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.8e-17 95.1 81 60.5
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.2e-17 94.7 125 49.6
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.8e-15 88.2 115 60.9
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.8e-14 85.5 259 30.9
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 6.7e-11 74.7 136 43.4
RcHm_v2.0_Chr5g0003041 Rosa chinensis HOM05D002890 ORTHO05D005855 1.5e-10 73.6 188 45.2
RcHm_v2.0_Chr5g0003151 Rosa chinensis HOM05D002890 ORTHO05D005855 1.6e-09 70.1 188 44.1
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 2.1e-09 69.7 55 61.8
RcHm_v2.0_Chr5g0003101 Rosa chinensis HOM05D002890 ORTHO05D005855 3.6e-09 68.9 188 43.1
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 2.4e-08 66.2 64 57.8
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 2.4e-08 66.2 64 57.8


User provided reference genes

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