Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p063033 Quercus lobata HOM05D004646 ORTHO05D005829 1.9e-147 525.8 265 100.0
QL03p064307 Quercus lobata HOM05D004646 ORTHO05D005829 6.3e-138 494.2 254 97.6
CiPaw.05G135800 Carya illinoinensis HOM05D004646 ORTHO05D005829 1.6e-96 356.7 237 76.8
Cfa008987 Carpinus fangiana HOM05D004646 ORTHO05D005829 1.0e-92 344.0 267 70.8
CANSAT64G1881 Cannabis sativa HOM05D004646 ORTHO05D005829 2.0e-88 329.7 211 77.3
Haze_12017 Corylus avellana HOM05D004646 ORTHO05D005829 2.0e-88 329.7 281 66.9
Dinv16641 Davidia involucrata HOM05D004646 ORTHO05D005829 5.9e-88 328.2 215 75.3
TPR.G31818 Trifolium pratense HOM05D004646 ORTHO05D005829 5.0e-87 325.1 250 66.4
Ciclev10032082m.g Citrus clementina HOM05D004646 ORTHO05D005829 6.6e-87 324.7 259 66.4
Phvul.011G179800 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 6.6e-87 324.7 213 73.7
Hma1.2p1_0795F.1_g218775 Hydrangea macrophylla HOM05D004646 ORTHO05D005829 2.5e-86 322.8 218 72.0
Lj4g0000065 Lotus japonicus HOM05D004646 ORTHO05D005829 3.3e-86 322.4 213 74.6
Manes.05G100900 Manihot esculenta HOM05D004646 ORTHO05D005829 7.3e-86 321.2 214 76.2
Phvul.L004046 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 7.3e-86 321.2 213 73.2
VMungo1127G0944 Vigna mungo HOM05D004646 ORTHO05D005829 1.6e-85 320.1 213 73.7
ClCG05G024330 Citrullus lanatus HOM05D004646 ORTHO05D005829 3.6e-85 318.9 222 71.2
Medtr8g467540 Medicago truncatula HOM05D004646 ORTHO05D005829 3.6e-85 318.9 256 65.6
Thecc.02G347000 Theobroma cacao HOM05D004646 ORTHO05D005829 3.6e-85 318.9 216 73.1
Lalb_Chr05g0220381 Lupinus albus HOM05D004646 ORTHO05D005829 1.4e-84 317.0 269 65.8
COL.COLO4_23008 Corchorus olitorius HOM05D004646 ORTHO05D005829 6.8e-84 314.7 220 69.5
Cc11_g13050 Coffea canephora HOM05D004646 ORTHO05D005829 1.2e-83 313.9 218 69.7
Potri.008G147600 Populus trichocarpa HOM05D004646 ORTHO05D005829 1.2e-83 313.9 254 65.4
Sabra08G0112200 Salix brachista HOM05D004646 ORTHO05D005829 2.0e-83 313.2 216 73.1
CSS0046070 Camellia sinensis var. sinensis HOM05D004646 ORTHO05D005829 2.6e-83 312.8 232 70.3
Lalb_Chr09g0329301 Lupinus albus HOM05D004646 ORTHO05D005829 2.6e-83 312.8 268 64.2
MD13G1072600 Malus domestica HOM05D004646 ORTHO05D005829 3.4e-83 312.4 270 64.1
CsaV3_5G032630 Cucumis sativus L. HOM05D004646 ORTHO05D005829 4.4e-83 312.0 217 71.0
Duzib251G0705 Durio zibethinus HOM05D004646 ORTHO05D005829 4.4e-83 312.0 214 72.9
Sed0009585 Sechium edule HOM05D004646 ORTHO05D005829 4.4e-83 312.0 237 67.9
Psat4g134400 Pisum sativum HOM05D004646 ORTHO05D005829 5.8e-83 311.6 262 63.7
MELO3C012090.2 Cucumis melo HOM05D004646 ORTHO05D005829 7.5e-83 311.2 217 70.5
Prupe.1G273600 Prunus persica HOM05D004646 ORTHO05D005829 1.3e-82 310.5 247 64.8
Glyma.18G119400 Glycine max HOM05D004646 ORTHO05D005829 1.7e-82 310.1 213 71.4
Gohir.A04G147800 Gossypium hirsutum HOM05D004646 ORTHO05D005829 1.7e-82 310.1 205 74.6
GSVIVG01019995001 Vitis vinifera HOM05D004646 ORTHO05D005829 2.2e-82 309.7 257 66.1
PGR102G1495 Punica granatum HOM05D004646 ORTHO05D005829 4.9e-82 308.5 201 74.6
Atru.chr11.1794 Acer truncatum HOM05D004646 ORTHO05D005829 8.3e-82 307.8 262 63.0
Gorai.012G187500 Gossypium raimondii HOM05D004646 ORTHO05D005829 1.9e-81 306.6 205 74.1
Gohir.D04G192100 Gossypium hirsutum HOM05D004646 ORTHO05D005829 7.0e-81 304.7 204 74.5
Eucgr.B03438 Eucalyptus grandis HOM05D004646 ORTHO05D005829 1.6e-80 303.5 264 62.5
Oeu055120.1 Olea europaea HOM05D004646 ORTHO05D005829 1.6e-80 303.5 211 70.1
MSTRG.7804 Avicennia marina HOM05D004646 ORTHO05D005829 2.7e-80 302.8 258 62.0
Nn3g17224 Nelumbo nucifera HOM05D004646 ORTHO05D005829 2.7e-80 302.8 249 62.2
Glyma.08G300800 Glycine max HOM05D004646 ORTHO05D005829 3.5e-80 302.4 194 74.2
MD16G1073400 Malus domestica HOM05D004646 ORTHO05D005829 4.6e-80 302.0 230 69.1
RcHm_v2.0_Chr4g0439911 Rosa chinensis HOM05D004646 ORTHO05D005829 7.8e-80 301.2 217 70.0
AUR62028786 Chenopodium quinoa HOM05D004646 ORTHO05D005829 1.3e-79 300.4 248 63.3
arahy.Tifrunner.gnm1.ann1.9WQ92K Arachis hypogaea HOM05D004646 ORTHO05D005829 1.7e-79 300.1 256 62.5
FAN12G2979 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.1e-78 297.4 251 64.1
VMungo0251G2645 Vigna mungo HOM05D004646 ORTHO05D005829 1.1e-78 297.4 202 71.3
Actinidia31896 Actinidia chinensis HOM05D004646 ORTHO05D005829 4.3e-78 295.4 188 78.7
PSO832G2587 Papaver somniferum HOM05D004646 ORTHO05D005829 4.3e-78 295.4 224 63.4
PGSC0003DMG400031270 Solanum tuberosum HOM05D004646 ORTHO05D005829 7.3e-78 294.7 230 65.2
FAN07G2721 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.6e-77 293.5 245 62.9
SalBow2G3250 Salvia bowleyana HOM05D004646 ORTHO05D005829 1.6e-77 293.5 227 64.8
PSO063G0788 Papaver somniferum HOM05D004646 ORTHO05D005829 2.1e-77 293.1 240 61.2
Sc14g0008260 Simmondsia chinensis HOM05D004646 ORTHO05D005829 2.1e-77 293.1 213 66.2
THA.LOC104801795 Tarenaya hassleriana HOM05D004646 ORTHO05D005829 2.8e-77 292.7 211 67.3
FvH4_4g31430 Fragaria vesca HOM05D004646 ORTHO05D005829 3.6e-77 292.4 251 63.3
Solyc05g007500.4 Solanum lycopersicum HOM05D004646 ORTHO05D005829 8.0e-77 291.2 245 62.9
arahy.Tifrunner.gnm1.ann1.K6CIAB Arachis hypogaea HOM05D004646 ORTHO05D005829 1.1e-76 290.8 270 59.3
Thhalv10008130m.g Eutrema salsugineum HOM05D004646 ORTHO05D005829 1.4e-76 290.4 263 58.9
FAN17G1826 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.3e-76 289.7 251 62.9
Sopen05g003380 Solanum pennellii HOM05D004646 ORTHO05D005829 3.1e-76 289.3 245 62.4
Lsat_1_v5_gn_8_53300 Lactuca sativa HOM05D004646 ORTHO05D005829 8.9e-76 287.7 212 67.5
BolC5t29957H Brassica oleracea HOM05D004646 ORTHO05D005829 4.4e-75 285.4 264 58.0
Carub.0001s1395 Capsella rubella HOM05D004646 ORTHO05D005829 4.4e-75 285.4 267 57.3
C05p12020 Brassica napus HOM05D004646 ORTHO05D005829 5.8e-75 285.0 264 58.0
Peaxi162Scf00541g00118 Petunia axillaris HOM05D004646 ORTHO05D005829 5.8e-75 285.0 252 60.3
ECA233G2883 Erigeron canadensis HOM05D004646 ORTHO05D005829 9.8e-75 284.3 213 65.3
Sp1g12620 Schrenkiella parvula HOM05D004646 ORTHO05D005829 1.7e-74 283.5 263 56.3
A06p10240 Brassica napus HOM05D004646 ORTHO05D005829 2.9e-74 282.7 264 57.2
BraA06t24207Z Brassica rapa HOM05D004646 ORTHO05D005829 2.9e-74 282.7 264 57.2
vmacro01257 Vaccinium macrocarpon HOM05D004646 ORTHO05D005829 6.4e-74 281.6 188 71.8
CAN.G58.23 Capsicum annuum HOM05D004646 ORTHO05D005829 8.3e-74 281.2 229 62.4
A08p32030 Brassica napus HOM05D004646 ORTHO05D005829 1.4e-73 280.4 263 56.3
BcaB03g13106 Brassica carinata HOM05D004646 ORTHO05D005829 2.4e-73 279.6 268 55.6
HanXRQChr12g0362151 Helianthus annuus HOM05D004646 ORTHO05D005829 7.0e-73 278.1 216 64.4
Aa31LG1G790 Aethionema arabicum HOM05D004646 ORTHO05D005829 1.2e-72 277.3 269 55.8
BraA08t35124Z Brassica rapa HOM05D004646 ORTHO05D005829 1.2e-72 277.3 263 55.9
Rhsim12G0063600 Rhododendron simsii HOM05D004646 ORTHO05D005829 1.2e-72 277.3 276 55.1
AT1G14270 Arabidopsis thaliana HOM05D004646 ORTHO05D005829 1.6e-72 276.9 223 61.4
Aqoxy3G03371 Aquilegia oxysepala HOM05D004646 ORTHO05D005829 2.1e-72 276.6 234 59.4
Nitab4.5_0001503g0160 Nicotiana tabacum HOM05D004646 ORTHO05D005829 3.5e-72 275.8 248 60.1
Hund05883 Selenicereus undatus HOM05D004646 ORTHO05D005829 4.6e-72 275.4 189 67.7
SGA_v2.0_scaffold53G19364 Striga asiatica HOM05D004646 ORTHO05D005829 4.6e-72 275.4 227 63.0
unitig_747.g21177 Utricularia gibba HOM05D004646 ORTHO05D005829 1.0e-71 274.2 189 68.8
ATR0564G518 Amborella trichopoda HOM05D004646 ORTHO05D005829 1.3e-71 273.9 189 67.7
Migut.L01300 Erythranthe guttata HOM05D004646 ORTHO05D005829 1.3e-71 273.9 232 60.3
EL10Ac6g13196 Beta vulgaris HOM05D004646 ORTHO05D005829 1.7e-71 273.5 230 63.5
CDE09G0693 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 1.7e-71 273.5 197 66.0
AL1G26150 Arabidopsis lyrata HOM05D004646 ORTHO05D005829 2.3e-71 273.1 261 55.2
C08p16560 Brassica napus HOM05D004646 ORTHO05D005829 3.0e-71 272.7 267 54.7
BcaC07g38729 Brassica carinata HOM05D004646 ORTHO05D005829 3.9e-71 272.3 267 54.7
BolC8t49284H Brassica oleracea HOM05D004646 ORTHO05D005829 3.9e-71 272.3 267 54.3
Hund25246 Selenicereus undatus HOM05D004646 ORTHO05D005829 1.1e-70 270.8 203 65.0
Cpa.g.sc128.19 Carica papaya HOM05D004646 ORTHO05D005829 1.4e-65 253.8 157 79.6
HPP92_027580 Vanilla planifolia HOM05D004646 ORTHO05D005829 3.2e-65 252.7 217 59.4
Zm00001eb312490 Zea mays HOM05D004646 ORTHO05D005829 2.3e-63 246.5 224 55.4
TAR371G0666 Trochodendron aralioides HOM05D004646 ORTHO05D005829 6.6e-63 245.0 200 60.5
AUR62005771 Chenopodium quinoa HOM05D004646 ORTHO05D005829 1.1e-62 244.2 216 60.2
Zm00001eb041360 Zea mays HOM05D004646 ORTHO05D005829 4.3e-62 242.3 209 57.4
FAN22G0666 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.4e-60 236.5 156 74.4
BcaC05g25320 Brassica carinata HOM05D004646 ORTHO05D005829 8.9e-60 234.6 264 51.9
DCAR_027410 Daucus carota HOM05D004646 ORTHO05D005829 3.4e-59 232.6 210 59.5
Nn4g23150 Nelumbo nucifera HOM05D004646 ORTHO05D005829 9.9e-59 231.1 205 57.1
Migut.L01298 Erythranthe guttata HOM05D004646 ORTHO05D005829 4.2e-57 225.7 195 57.4
Migut.L01299 Erythranthe guttata HOM05D004646 ORTHO05D005829 7.1e-57 224.9 213 53.1
Lj2g0013736 Lotus japonicus HOM05D004646 ORTHO05D005829 2.1e-56 223.4 272 47.1
Nitab4.5_0011071g0010 Nicotiana tabacum HOM05D004646 ORTHO05D005829 1.7e-55 220.3 233 53.6
MBI05_g08286_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 1.9e-54 216.9 224 50.4
CARHR014690 Cardamine hirsuta HOM05D004646 ORTHO05D005829 2.5e-54 216.5 207 55.1
arahy.Tifrunner.gnm1.ann1.33WNW9 Arachis hypogaea HOM05D004646 ORTHO05D005829 7.3e-54 214.9 184 57.6
Lj2g0003230 Lotus japonicus HOM05D004646 ORTHO05D005829 2.0e-51 206.8 244 48.0
QL03p063041 Quercus lobata HOM05D004646 ORTHO05D005829 3.8e-50 202.6 258 51.6
QL03p064300 Quercus lobata HOM05D004646 ORTHO05D005829 1.4e-49 200.7 258 51.2
Mapoly0033s0092 Marchantia polymorpha HOM05D004646 ORTHO05D005829 2.4e-44 183.3 186 49.5
Pp3c21_22610 Physcomitrium patens HOM05D004646 ORTHO05D005829 2.1e-37 160.2 202 43.6
CBR_g52133 Chara braunii HOM05D004646 ORTHO05D005829 1.8e-36 157.1 184 47.3
Nn1g09141 Nelumbo nucifera HOM05D004646 ORTHO05D005829 5.3e-36 155.6 199 41.7
TAR629G0643 Trochodendron aralioides HOM05D004646 ORTHO05D005829 9.0e-36 154.8 246 36.2
FAN09G3389 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.7e-34 150.6 112 65.2
Ca_07115_v3 Cicer arietinum L. HOM05D004646 ORTHO05D005829 1.1e-33 147.9 104 67.3
FAN23G2906 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.4e-33 147.5 106 66.0
SMO007G0001 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 2.5e-33 146.7 158 52.5
SMO200G0049 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 2.5e-33 146.7 158 52.5
AagrBONN_evm.TU.Sc2ySwM_228.1869 Anthoceros agrestis HOM05D004646 ORTHO05D005829 4.2e-33 146.0 181 42.0
arahy.Tifrunner.gnm1.ann1.J8CRVY Arachis hypogaea HOM05D004646 ORTHO05D005829 1.1e-30 137.9 160 48.1
PSO767G0002 Papaver somniferum HOM05D004646 ORTHO05D005829 3.7e-29 132.9 183 38.8
MBI19_g09320_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 3.1e-28 129.8 154 43.5
CDE04G3684 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 4.5e-27 125.9 176 37.5
PSO384G3479 Papaver somniferum HOM05D004646 ORTHO05D005829 3.9e-23 112.8 207 33.3
RcHm_v2.0_Chr4g0413061 Rosa chinensis HOM05D004646 ORTHO05D005829 2.2e-21 107.1 72 69.4
FAN09G2429 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.1e-20 104.8 138 51.4
FAN04G0237 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.1e-20 103.2 131 51.9
FAN12G3236 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.1e-20 103.2 138 50.7
FAN21G2061 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.1e-20 103.2 138 50.7
FAN17G1446 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.5e-19 100.9 138 50.0
PRCOL_00002500 Prasinoderma coloniale HOM05D004646 ORTHO05D005829 2.0e-19 100.5 183 36.6
ECA247G1057 Erigeron canadensis HOM05D004646 ORTHO05D000001 3.3e-14 83.2 55 76.4
ATR0307G023 Amborella trichopoda HOM05D004646 ORTHO05D005829 3.1e-12 76.6 138 31.2
Cre06.g310050 Chlamydomonas reinhardtii HOM05D004646 ORTHO05D005829 1.4e-09 67.8 193 31.1
VMungo0331G0231 Vigna mungo HOM05D004646 ORTHO05D012812 3.6e-08 63.2 45 64.4
DCAR_020292 Daucus carota HOM05D003816 ORTHO05D004410 5.1e-07 59.3 216 25.5
TAR375G0902 Trochodendron aralioides HOM05D003816 ORTHO05D004410 6.7e-07 58.9 228 25.9
SEGI_11210 Sequoiadendron giganteum HOM05D004646 ORTHO05D005829 1.1e-06 58.2 57 49.1
Ciclev10020944m.g Citrus clementina HOM05D003816 ORTHO05D004410 2.6e-06 57.0 215 25.6
CANSAT21G2538 Cannabis sativa HOM05D003816 ORTHO05D004410 3.3e-06 56.6 180 26.1
Eucgr.A02683 Eucalyptus grandis HOM05D003816 ORTHO05D004410 3.3e-06 56.6 181 26.5
Os08g0436600 Oryza sativa ssp. japonica HOM05D004646 ORTHO05D005829 3.3e-06 56.6 49 49.0
MBI06_g33549_MAGBIO Magnolia biondii HOM05D003816 ORTHO05D004410 5.7e-06 55.8 221 26.2
Sed0000969 Sechium edule HOM05D003816 ORTHO05D004410 5.7e-06 55.8 219 25.1
Aqoxy7G02903 Aquilegia oxysepala HOM05D003816 ORTHO05D004410 9.7e-06 55.1 181 25.4
Dinv35291 Davidia involucrata HOM05D000662 ORTHO05D004410 9.7e-06 55.1 179 27.4


User provided reference genes

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