Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p061920 Quercus lobata HOM05D008443 ORTHO05D010587 2.4e-34 148.3 75 100.0
Manes.01G198240 Manihot esculenta HOM05D008443 ORTHO05D010587 1.9e-23 112.1 72 75.0
Manes.05G088700 Manihot esculenta HOM05D008443 ORTHO05D010587 3.9e-21 104.4 73 74.0
CSS0001689 Camellia sinensis var. sinensis HOM05D008443 ORTHO05D010587 2.8e-19 98.2 82 68.3
CiPaw.05G147800 Carya illinoinensis HOM05D008443 ORTHO05D010587 7.7e-17 90.1 70 68.6
Gohir.A05G318400 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.2e-16 88.6 73 67.1
Duzib268G1406 Durio zibethinus HOM05D008443 ORTHO05D010587 3.8e-16 87.8 74 66.2
Gohir.A03G141200 Gossypium hirsutum HOM05D008443 ORTHO05D010587 3.8e-16 87.8 78 61.5
Gohir.D02G164100 Gossypium hirsutum HOM05D008443 ORTHO05D010587 3.8e-16 87.8 78 61.5
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 3.8e-16 87.8 61 73.8
Aqoxy3G03049 Aquilegia oxysepala HOM05D008443 ORTHO05D010587 5.0e-16 87.4 59 71.2
Gorai.005G184100 Gossypium raimondii HOM05D008443 ORTHO05D010587 5.0e-16 87.4 78 61.5
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 4.2e-15 84.3 68 64.7
Gorai.009G343700 Gossypium raimondii HOM05D008443 ORTHO05D010587 9.4e-15 83.2 78 60.3
MBI15_g19742_MAGBIO Magnolia biondii HOM05D008443 ORTHO05D010587 1.2e-14 82.8 58 69.0
Phvul.003G053700 Phaseolus vulgaris HOM05D008443 ORTHO05D010587 1.2e-14 82.8 68 61.8
CANSAT01G1518 Cannabis sativa HOM05D008443 ORTHO05D010587 4.7e-14 80.9 66 69.7
Gohir.D05G320600 Gossypium hirsutum HOM05D008443 ORTHO05D010587 4.7e-14 80.9 77 59.7
Glyma.18G135000 Glycine max HOM05D008443 ORTHO05D010587 1.0e-13 79.7 68 63.2
ClCG05G025160 Citrullus lanatus HOM05D008443 ORTHO05D010587 1.4e-13 79.3 78 59.0
Glyma.08G289300 Glycine max HOM05D008443 ORTHO05D010587 3.0e-13 78.2 69 62.3
Eucgr.B03356 Eucalyptus grandis HOM05D008443 ORTHO05D010587 5.2e-13 77.4 47 80.9
Rhsim12G0048000 Rhododendron simsii HOM05D008443 ORTHO05D010587 5.2e-13 77.4 74 59.5
TAR629G3213 Trochodendron aralioides HOM05D008443 ORTHO05D010587 6.8e-13 77.0 70 55.7
MD16G1089300 Malus domestica HOM05D008443 ORTHO05D010587 2.6e-12 75.1 59 67.8
Dinv31086 Davidia involucrata HOM05D000086 ORTHO05D000983 5.7e-12 73.9 62 66.1
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 5.7e-12 73.9 56 67.9
PGR102G0936 Punica granatum HOM05D008443 ORTHO05D010587 5.7e-12 73.9 68 63.2
TWI36G1347 Tripterygium wilfordii HOM05D008443 ORTHO05D010587 5.7e-12 73.9 71 59.2
Haze_07480 Corylus avellana HOM05D008443 ORTHO05D010587 7.5e-12 73.6 74 48.6
Lalb_Chr16g0382381 Lupinus albus HOM05D008443 ORTHO05D010587 7.5e-12 73.6 69 56.5
MSTRG.2385 Avicennia marina HOM05D008443 ORTHO05D010587 9.7e-12 73.2 65 63.1
VMungo0251G0489 Vigna mungo HOM05D008443 ORTHO05D010587 9.7e-12 73.2 68 57.4
Sc11g0001310 Simmondsia chinensis HOM05D008443 ORTHO05D010587 1.7e-11 72.4 68 55.9
Dinv24885 Davidia involucrata HOM05D000086 ORTHO05D000983 2.8e-11 71.6 48 68.8
RcHm_v2.0_Chr4g0444191 Rosa chinensis HOM05D008443 ORTHO05D010587 3.7e-11 71.2 49 73.5
FAN17G0561 Fragaria x ananassa HOM05D008443 ORTHO05D010587 6.3e-11 70.5 49 67.3
FAN22G1825 Fragaria x ananassa HOM05D008443 ORTHO05D010587 6.3e-11 70.5 49 67.3
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 6.3e-11 70.5 67 58.2
MD13G1089100 Malus domestica HOM05D008443 ORTHO05D010587 6.3e-11 70.5 52 69.2
CsaV3_5G031740 Cucumis sativus L. HOM05D008443 ORTHO05D010587 1.1e-10 69.7 75 54.7
Cfa019086 Carpinus fangiana HOM05D008443 ORTHO05D010587 1.4e-10 69.3 60 56.7
MELO3C012013.2 Cucumis melo HOM05D008443 ORTHO05D010587 1.8e-10 68.9 81 53.1
Medtr8g063410 Medicago truncatula HOM05D008443 ORTHO05D010587 1.8e-10 68.9 67 52.2
AUR62013990 Chenopodium quinoa HOM05D008443 ORTHO05D010587 1.2e-09 66.2 61 55.7
Thecc.03G007600 Theobroma cacao HOM05D008443 ORTHO05D010587 1.2e-09 66.2 75 53.3
CDE07G0196 Ceratophyllum demersum HOM05D008443 ORTHO05D010587 7.7e-09 63.5 69 53.6
ATR1149G093 Amborella trichopoda HOM05D008443 ORTHO05D010587 1.7e-08 62.4 50 54.0
COL.COLO4_24771 Corchorus olitorius HOM05D008443 ORTHO05D010587 5.0e-08 60.8 74 50.0
Lj2g0011197 Lotus japonicus HOM05D008443 ORTHO05D010587 5.0e-08 60.8 77 45.5
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.2e-06 56.2 45 60.0
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.2e-06 56.2 45 60.0
DCAR_031087 Daucus carota HOM05D008443 ORTHO05D010587 2.1e-06 55.5 48 60.4
Sed0013077 Sechium edule HOM05D033138 ORTHO05D010587 2.7e-06 55.1 70 45.7
SEGI_04815 Sequoiadendron giganteum HOM05D008443 ORTHO05D010587 2.7e-06 55.1 44 59.1
HPP92_010558 Vanilla planifolia HOM05D008443 ORTHO05D010587 2.7e-06 55.1 49 53.1
Zm00001eb311500 Zea mays HOM05D040179 ORTHO05D037189 8.0e-06 53.5 56 48.2


User provided reference genes

Program Settings