Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 5.3e-150 534.6 333 100.0
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.8e-113 413.3 338 81.1
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 8.5e-108 394.4 336 79.8
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.4e-105 387.1 333 77.8
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.4e-102 377.1 335 76.4
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 4.5e-101 372.1 339 75.8
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.8e-100 369.0 336 75.9
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-99 367.5 354 71.5
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.9e-99 366.7 336 75.6
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.5e-99 366.3 354 70.6
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 4.2e-99 365.5 334 75.1
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 5.5e-99 365.2 334 75.1
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.7e-98 362.8 348 72.7
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 3.6e-98 362.5 346 72.0
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 3.6e-98 362.5 346 72.0
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 8.0e-98 361.3 338 73.7
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.6e-96 356.3 358 70.1
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 9.7e-96 354.4 340 73.2
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 6.3e-95 351.7 353 63.7
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.4e-94 350.5 349 69.6
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 3.1e-94 349.4 342 71.3
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 5.3e-94 348.6 337 73.6
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 7.0e-94 348.2 368 67.9
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.6e-93 347.1 343 72.0
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.0e-93 346.7 341 70.1
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 2.6e-93 346.3 339 72.9
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 4.5e-93 345.5 345 69.9
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.3e-92 344.0 368 68.5
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.7e-92 343.6 341 71.8
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.2e-92 343.2 351 69.8
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.9e-92 342.8 339 70.8
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 8.5e-92 341.3 350 69.1
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 3.2e-91 339.3 379 63.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.2e-91 339.3 342 70.5
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 9.4e-91 337.8 353 68.6
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 2.1e-90 336.7 344 69.5
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.7e-90 335.5 334 71.0
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.7e-90 335.5 334 71.0
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.0e-90 334.7 344 69.2
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 8.0e-90 334.7 331 72.2
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.8e-89 333.6 395 50.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.8e-89 333.6 372 62.6
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.0e-89 332.4 334 71.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 5.2e-89 332.0 219 75.3
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 8.8e-89 331.3 341 68.6
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.5e-88 330.5 332 71.4
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.0e-88 330.1 347 70.6
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 3.4e-88 329.3 328 70.4
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 7.5e-88 328.2 336 68.5
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 9.7e-88 327.8 339 70.5
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.7e-87 327.0 355 67.6
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 4.8e-87 325.5 344 67.7
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 8.3e-87 324.7 333 65.5
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.1e-86 324.3 338 67.5
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.1e-86 324.3 312 72.1
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.8e-86 323.6 345 67.8
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.6e-85 320.5 337 67.1
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.7e-85 319.7 339 67.6
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 4.5e-85 318.9 345 67.2
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 4.5e-85 318.9 352 65.9
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 5.9e-85 318.5 332 66.0
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.9e-84 316.2 344 66.9
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.9e-84 316.2 332 63.3
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 5.0e-84 315.5 289 77.2
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 6.5e-84 315.1 346 65.9
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 8.5e-84 314.7 340 67.1
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 2.5e-83 313.2 344 66.3
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 4.2e-83 312.4 346 67.3
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 4.2e-83 312.4 337 65.9
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 5.5e-83 312.0 337 63.8
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 7.2e-83 311.6 346 63.6
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.2e-83 311.6 283 77.4
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 2.1e-82 310.1 346 65.6
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 3.6e-82 309.3 339 65.5
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 4.7e-82 308.9 324 70.1
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 6.1e-82 308.5 283 76.7
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.0e-81 306.2 341 66.3
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.0e-81 306.2 358 63.7
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 5.2e-81 305.4 283 73.9
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.2e-80 304.3 283 74.2
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.8e-79 299.7 339 66.7
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.1e-78 297.7 333 65.8
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 4.1e-78 295.8 351 64.7
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 9.1e-78 294.7 234 63.2
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.0e-77 293.5 323 67.5
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 3.5e-77 292.7 332 65.1
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.5e-77 292.7 244 61.9
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.3e-76 290.0 333 60.4
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.0e-76 288.9 216 68.1
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 6.6e-76 288.5 335 65.4
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.1e-75 287.7 292 69.5
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.6e-74 283.9 299 69.2
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.1e-74 283.5 287 63.1
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 4.0e-73 279.3 185 73.0
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 1.3e-71 274.2 336 63.4
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 3.7e-71 272.7 341 61.6
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.7e-71 272.7 208 66.8
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-70 271.2 335 63.3
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.6e-69 267.3 415 54.5
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.7e-68 263.8 345 57.4
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.7e-68 263.8 279 70.6
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.7e-68 263.8 299 63.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.5e-67 260.0 335 61.5
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 9.5e-67 258.1 312 65.1
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.1e-66 256.9 363 42.7
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 3.6e-66 256.1 302 65.6
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.1e-65 253.1 336 60.4
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 7.0e-62 241.9 317 45.4
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.9e-60 236.1 241 73.4
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 5.0e-60 235.7 164 70.1
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 8.0e-58 228.4 355 53.8
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 7.1e-54 215.3 325 55.4
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 5.8e-48 195.7 174 59.2
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 9.9e-48 194.9 180 56.7
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 9.2e-46 188.3 193 80.3
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 3.0e-44 183.3 264 60.6
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 8.6e-44 181.8 192 79.2
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.4e-41 174.5 241 64.7
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 5.8e-40 169.1 138 60.9
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 5.8e-40 169.1 165 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 4.3e-35 152.9 284 51.1
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 6.2e-34 149.1 286 51.4
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 9.9e-32 141.7 127 53.5
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.0e-28 131.7 172 43.6
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-27 128.3 201 40.3
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 9.6e-27 125.2 170 75.3
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.6e-27 125.2 171 42.7
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-26 124.4 142 88.7
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 4.2e-22 109.8 83 61.4
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.8e-20 104.4 107 48.6
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-20 104.0 128 85.9
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 1.4e-17 94.7 134 64.2
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.1e-17 93.6 122 88.5
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 2.0e-16 90.9 62 71.0
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.0e-16 90.9 81 56.8
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 4.5e-16 89.7 84 54.8
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.8e-12 77.8 48 75.0
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.4e-08 63.5 55 60.0
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.3e-07 61.6 40 65.0
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 5.0e-07 59.7 46 73.9
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 6.5e-07 59.3 47 59.6
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.4e-06 58.2 36 72.2
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 5.5e-06 56.2 57 50.9


User provided reference genes

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