Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 8.0e-43 176.8 96 100.0
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 2.3e-26 122.1 93 72.0
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 5.2e-26 120.9 93 74.2
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 5.8e-25 117.5 91 75.8
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.1e-23 113.2 87 75.9
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 3.2e-23 111.7 82 72.0
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 3.9e-21 104.8 101 64.4
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 1.9e-20 102.4 96 59.4
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 4.3e-20 101.3 100 62.0
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 7.3e-20 100.5 96 61.5
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 3.6e-19 98.2 101 60.4
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 3.6e-19 98.2 96 61.5
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 4.7e-19 97.8 99 57.6
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 2.3e-18 95.5 105 59.0
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 2.3e-18 95.5 99 54.5
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 2.3e-18 95.5 100 62.0
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 2.3e-18 95.5 88 62.5
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 4.4e-17 91.3 96 56.2
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 7.6e-17 90.5 103 51.5
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 7.6e-17 90.5 103 51.5
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 2.2e-16 89.0 86 61.6
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 2.2e-16 89.0 103 50.5
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 2.9e-16 88.6 78 57.7
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 4.9e-16 87.8 94 59.6
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 4.9e-16 87.8 68 66.2
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 6.4e-16 87.4 101 58.4
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 1.4e-15 86.3 82 62.2
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 1.4e-15 86.3 84 56.0
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 2.4e-15 85.5 93 51.6
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 2.4e-15 85.5 88 58.0
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 5.4e-15 84.3 82 57.3
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 5.4e-15 84.3 90 54.4
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 7.1e-15 84.0 100 52.0
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 9.2e-15 83.6 101 55.4
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 1.6e-14 82.8 105 51.4
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 1.6e-14 82.8 72 62.5
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 6.0e-14 80.9 72 62.5
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 2.3e-13 79.0 72 66.7
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 3.0e-13 78.6 95 49.5
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 3.0e-13 78.6 105 47.6
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 3.9e-13 78.2 104 47.1
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 5.1e-13 77.8 78 59.0
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 6.6e-13 77.4 72 65.3
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 6.6e-13 77.4 100 47.0
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 8.6e-13 77.0 71 66.2
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 1.5e-12 76.3 74 55.4
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 1.9e-12 75.9 83 54.2
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 2.5e-12 75.5 74 55.4
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 2.5e-12 75.5 74 55.4
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 2.5e-12 75.5 94 54.3
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 3.3e-12 75.1 77 55.8
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 4.3e-12 74.7 96 49.0
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 9.6e-12 73.6 84 53.6
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 9.6e-12 73.6 83 55.4
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 9.6e-12 73.6 82 54.9
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 1.2e-11 73.2 74 54.1
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 1.2e-11 73.2 74 54.1
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 1.2e-11 73.2 85 51.8
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 1.6e-11 72.8 62 59.7
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 2.1e-11 72.4 51 76.5
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 2.1e-11 72.4 51 76.5
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 2.1e-11 72.4 58 60.3
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 2.8e-11 72.0 88 52.3
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 4.7e-11 71.2 75 58.7
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 4.7e-11 71.2 70 57.1
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 4.7e-11 71.2 76 55.3
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 4.7e-11 71.2 72 56.9
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 4.7e-11 71.2 68 63.2
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 4.7e-11 71.2 100 53.0
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 6.2e-11 70.9 65 60.0
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 8.1e-11 70.5 73 53.4
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 8.1e-11 70.5 82 52.4
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.1e-10 70.1 84 57.1
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 1.1e-10 70.1 62 58.1
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 1.8e-10 69.3 87 58.6
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 1.8e-10 69.3 70 52.9
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 1.8e-10 69.3 70 52.9
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 1.8e-10 69.3 70 52.9
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 1.8e-10 69.3 70 52.9
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 1.8e-10 69.3 70 52.9
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 2.4e-10 68.9 44 70.5
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 3.1e-10 68.6 80 55.0
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 4.0e-10 68.2 79 49.4
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 4.0e-10 68.2 76 52.6
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 4.0e-10 68.2 84 45.2
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 5.2e-10 67.8 43 67.4
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 8.9e-10 67.0 63 57.1
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.2e-09 66.6 82 54.9
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.2e-09 66.6 75 53.3
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 2.6e-09 65.5 66 54.5
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 4.4e-09 64.7 44 68.2
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 4.4e-09 64.7 75 49.3
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 5.8e-09 64.3 80 53.8
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 9.9e-09 63.5 45 60.0
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 1.7e-08 62.8 98 44.9
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 2.9e-08 62.0 83 51.8
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 2.9e-08 62.0 57 59.6
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 6.4e-08 60.8 63 49.2
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 6.4e-08 60.8 79 49.4
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 1.1e-07 60.1 93 46.2
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 4.2e-07 58.2 41 68.3
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 4.2e-07 58.2 44 68.2
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 5.4e-07 57.8 50 64.0
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 7.1e-07 57.4 46 60.9
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.1e-07 57.4 51 52.9
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 7.1e-07 57.4 51 52.9
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 9.3e-07 57.0 60 55.0
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.2e-06 56.6 48 58.3
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 1.6e-06 56.2 47 66.0
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.1e-06 55.8 49 59.2
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.1e-06 55.8 51 51.0
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 2.1e-06 55.8 70 40.0
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 2.1e-06 55.8 42 61.9
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.7e-06 55.5 42 64.3
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.7e-06 55.5 55 54.5
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.7e-06 55.5 87 43.7
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 2.7e-06 55.5 54 53.7
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 2.7e-06 55.5 87 43.7
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 3.5e-06 55.1 34 67.6
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 3.5e-06 55.1 87 43.7
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 3.5e-06 55.1 46 56.5
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 3.5e-06 55.1 76 47.4
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.6e-06 54.7 48 60.4
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 6.0e-06 54.3 45 62.2
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 6.0e-06 54.3 87 43.7
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 6.0e-06 54.3 53 52.8
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 6.0e-06 54.3 45 62.2
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 6.0e-06 54.3 45 62.2
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 6.0e-06 54.3 57 50.9
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 7.8e-06 53.9 35 68.6
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 7.8e-06 53.9 59 52.5
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 7.8e-06 53.9 44 61.4
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 7.8e-06 53.9 73 49.3
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 7.8e-06 53.9 45 62.2
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 7.8e-06 53.9 75 42.7


User provided reference genes

Program Settings