Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 1.2e-186 656.4 329 100.0
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 1.3e-113 413.7 366 62.8
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 6.6e-113 411.4 302 72.2
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 3.3e-112 409.1 306 69.0
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 1.1e-110 404.1 300 68.7
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 4.0e-110 402.1 300 68.3
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 3.4e-109 399.1 298 68.8
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 1.3e-108 397.1 286 70.6
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 3.8e-108 395.6 303 66.0
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 3.5e-106 389.0 302 65.6
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 4.6e-106 388.7 300 67.7
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 7.8e-106 387.9 301 67.1
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 1.1e-104 384.0 304 64.5
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 1.3e-103 380.6 300 68.3
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 1.3e-103 380.6 312 62.5
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 1.3e-103 380.6 301 68.1
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 3.6e-103 379.0 301 65.1
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.2e-103 378.3 301 65.8
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.2e-103 378.3 301 65.8
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 8.1e-103 377.9 300 67.7
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.0e-102 375.6 300 65.0
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.6e-101 372.9 300 65.0
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 4.9e-100 368.6 300 67.7
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 8.4e-100 367.9 300 63.0
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 1.4e-99 367.1 300 64.7
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 1.4e-99 367.1 272 69.9
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 4.2e-99 365.5 270 68.5
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 7.9e-98 361.3 300 62.7
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 3.9e-97 359.0 290 63.4
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 6.7e-97 358.2 285 63.5
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 1.1e-96 357.5 282 64.2
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 1.6e-95 353.6 301 61.8
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 4.8e-95 352.1 298 59.7
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 4.8e-95 352.1 288 65.6
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 2.4e-94 349.7 292 61.0
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 4.0e-94 349.0 287 63.8
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 9.0e-94 347.8 299 61.2
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 5.8e-93 345.1 283 64.7
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 7.6e-93 344.7 295 61.0
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 1.3e-92 344.0 293 60.8
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 1.7e-92 343.6 280 63.6
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 1.7e-92 343.6 290 62.4
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 1.7e-92 343.6 284 64.1
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 3.8e-92 342.4 287 61.7
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 3.8e-92 342.4 292 59.9
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.8e-92 342.4 292 63.4
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 4.9e-92 342.0 294 62.2
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 1.1e-91 340.9 280 62.9
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 1.4e-91 340.5 293 62.1
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.4e-91 340.5 290 61.7
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 1.4e-91 340.5 299 60.9
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 4.2e-91 339.0 284 61.3
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 2.1e-90 336.7 295 59.3
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 2.7e-90 336.3 281 61.6
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 3.5e-90 335.9 303 58.4
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 3.5e-90 335.9 282 61.7
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 7.9e-90 334.7 295 59.7
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 1.0e-89 334.3 274 61.7
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 1.8e-89 333.6 299 59.2
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 1.8e-89 333.6 284 62.3
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 6.7e-89 331.6 282 61.3
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 8.7e-89 331.3 299 58.5
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 1.9e-88 330.1 292 58.9
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 2.5e-88 329.7 278 62.6
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 5.6e-88 328.6 306 57.8
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 1.4e-86 323.9 280 61.4
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 2.4e-86 323.2 284 60.2
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 3.1e-86 322.8 228 71.1
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 4.0e-86 322.4 295 58.3
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 6.9e-86 321.6 300 57.0
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 1.2e-85 320.9 300 57.0
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 2.6e-85 319.7 281 60.1
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 7.6e-85 318.2 297 58.2
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 1.0e-84 317.8 295 58.0
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 4.9e-84 315.5 298 59.1
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 4.9e-84 315.5 275 60.0
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 8.4e-84 314.7 318 55.7
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 1.9e-83 313.5 265 63.8
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 3.2e-83 312.8 297 57.9
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 9.3e-83 311.2 297 57.2
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 2.7e-82 309.7 292 57.5
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 4.6e-82 308.9 269 58.4
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 1.0e-81 307.8 274 60.2
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 1.1e-80 304.3 274 59.5
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 2.2e-79 300.1 242 64.0
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 1.8e-78 297.0 281 56.2
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 7.6e-77 291.6 293 54.6
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.6e-74 283.9 279 54.1
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.7e-71 273.9 287 52.3
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 1.6e-66 257.3 271 53.1
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 3.0e-65 253.1 247 56.3
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 3.9e-57 226.1 283 46.6
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 4.8e-55 219.2 218 53.2
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 4.5e-53 212.6 281 43.4
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 5.0e-52 209.1 211 51.7
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 1.9e-51 207.2 158 67.7
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.2e-44 183.7 277 39.7
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.2e-44 183.7 228 44.7
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 7.2e-43 178.7 212 47.6
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.1e-38 164.9 214 43.9
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 5.9e-37 159.1 127 61.4
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 3.3e-35 153.3 258 37.6
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 3.4e-32 143.3 161 49.7
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 7.5e-32 142.1 225 38.7
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 2.1e-18 97.4 113 46.0
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 2.2e-15 87.4 110 45.5
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 4.9e-15 86.3 111 48.6
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 9.5e-11 72.0 46 71.7
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.2e-10 71.6 45 73.3
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 4.0e-09 66.6 45 68.9
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.6e-08 63.9 61 49.2
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.4e-08 63.5 38 73.7
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 4.9e-07 59.7 51 56.9


User provided reference genes

Program Settings