Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 3.3e-110 401.7 205 100.0
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 3.9e-103 378.3 207 93.2
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.9e-103 378.3 207 92.8
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 6.6e-103 377.5 207 92.8
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 8.6e-103 377.1 207 92.8
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.1e-102 376.7 207 92.8
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 2.5e-102 375.6 207 92.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 4.3e-102 374.8 207 92.3
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.3e-102 374.8 207 92.3
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 5.6e-102 374.4 207 91.8
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 9.5e-102 373.6 207 91.3
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 9.5e-102 373.6 207 91.8
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 9.5e-102 373.6 207 91.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.2e-101 373.2 207 91.8
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.2e-101 373.2 207 92.3
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.6e-101 372.9 207 91.8
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.6e-101 372.9 207 91.8
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.6e-101 372.9 207 91.8
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.6e-101 372.9 207 91.8
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 91.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 91.7
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.1e-100 370.2 207 89.9
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 90.3
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.4e-100 369.8 206 91.3
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 90.3
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.8e-100 369.4 207 89.9
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.2e-100 367.9 207 90.3
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 5.2e-100 367.9 207 89.9
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 8.9e-100 367.1 207 89.9
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 8.9e-100 367.1 207 89.9
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.2e-99 366.7 206 91.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.2e-99 366.7 207 89.9
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.2e-99 366.7 207 89.4
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.2e-99 366.7 207 90.3
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-99 366.3 207 89.9
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-99 366.3 207 89.9
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 2.0e-99 365.9 207 88.9
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 2.6e-99 365.5 207 90.8
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 3.4e-99 365.2 207 89.9
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 3.4e-99 365.2 207 89.9
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 4.4e-99 364.8 207 88.4
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 7.6e-99 364.0 207 89.4
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 7.6e-99 364.0 206 89.8
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 9.9e-99 363.6 207 89.4
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 9.9e-99 363.6 207 88.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 1.3e-98 363.2 207 89.4
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.3e-98 363.2 207 89.4
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.3e-98 363.2 206 89.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.7e-98 362.8 206 89.3
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.2e-98 362.5 212 88.7
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 2.9e-98 362.1 206 88.8
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.8e-98 361.7 206 88.3
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 4.9e-98 361.3 207 89.4
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.4e-98 360.9 207 87.4
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 6.4e-98 360.9 207 88.4
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.9e-97 359.4 207 88.4
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 3.2e-97 358.6 206 88.8
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 5.4e-97 357.8 210 88.1
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 9.2e-97 357.1 206 86.9
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.6e-96 356.3 207 86.0
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 2.1e-96 355.9 207 87.0
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.1e-96 355.9 206 86.4
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.7e-96 355.5 207 87.0
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 2.7e-96 355.5 206 87.4
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 4.6e-96 354.8 208 87.5
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 4.6e-96 354.8 207 86.5
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 4.6e-96 354.8 206 87.9
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 7.8e-96 354.0 207 86.5
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.0e-95 353.6 203 88.2
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.3e-95 353.2 206 86.9
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.7e-95 352.8 208 87.0
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.7e-95 352.8 208 87.0
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.3e-95 352.4 207 88.9
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 87.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.9e-95 351.7 205 87.8
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 3.9e-95 351.7 208 87.0
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 6.6e-95 350.9 217 83.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 8.6e-95 350.5 205 86.8
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 8.6e-95 350.5 207 86.5
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 86.1
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 86.1
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.9e-94 349.4 206 86.4
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.9e-94 349.4 207 86.5
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.9e-94 349.4 207 85.0
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.5e-94 349.0 208 86.1
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.5e-94 349.0 208 86.1
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 2.5e-94 349.0 207 85.5
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 3.3e-94 348.6 207 85.0
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.3e-94 348.2 205 86.3
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 4.3e-94 348.2 206 86.4
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 5.6e-94 347.8 207 85.5
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 5.6e-94 347.8 207 85.5
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.2e-93 346.7 208 85.1
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.1e-93 345.9 196 89.8
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 6.2e-93 344.4 177 96.6
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 4.0e-92 341.7 180 94.4
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.2e-92 341.3 207 82.6
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.2e-92 341.3 207 82.1
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.2e-91 340.1 205 84.9
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 3.4e-91 338.6 207 82.1
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.8e-91 337.8 207 85.0
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.3e-90 336.7 180 93.9
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.7e-90 336.3 206 84.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.7e-90 336.3 206 84.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 6.4e-90 334.3 206 83.5
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 8.4e-90 334.0 177 93.2
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.4e-89 332.4 204 85.3
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 6.0e-88 327.8 206 81.6
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 6.6e-87 324.3 177 89.3
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 4.3e-86 321.6 180 87.2
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 7.3e-86 320.9 207 83.6
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.9e-81 306.2 207 73.9
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 7.9e-80 300.8 207 78.7
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 7.9e-80 300.8 190 82.6
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.1e-77 292.7 166 87.3
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.8e-76 289.7 155 91.0
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.5e-75 286.6 154 91.6
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.0e-71 273.9 205 72.2
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.0e-71 272.3 207 72.5
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 8.1e-69 264.2 209 69.4
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.9e-65 253.1 204 66.7
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 6.7e-63 244.6 167 77.2
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 6.7e-63 244.6 203 59.6
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 8.7e-63 244.2 202 59.9
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 6.9e-60 234.6 200 57.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.6e-59 232.6 197 58.9
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 8.5e-58 227.6 119 92.4
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.1e-54 217.2 205 51.7
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 3.3e-54 215.7 133 85.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.7e-53 212.2 150 74.7
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.2e-51 207.2 148 73.0
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.2e-48 197.2 207 50.2
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 5.1e-47 191.8 207 50.7
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.8e-44 183.3 208 52.4
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 4.1e-44 182.2 198 45.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 3.8e-42 175.6 196 43.9
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.1e-41 174.1 160 63.1
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.7e-40 169.5 205 49.8
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 2.7e-40 169.5 98 84.7
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.3e-38 162.5 231 42.0
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.0e-31 141.0 95 77.9
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-31 140.6 99 73.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 2.6e-30 136.3 92 76.1
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 7.0e-28 128.3 92 71.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 7.0e-28 128.3 187 38.0
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.8e-26 122.5 135 53.3
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 3.2e-25 119.4 59 89.8
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.6e-24 115.9 74 81.1
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 8.8e-23 111.3 82 68.3
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.0e-22 110.2 83 69.9
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.0e-22 110.2 73 79.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 4.8e-21 105.5 60 86.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 6.3e-13 78.6 61 62.3
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 2.9e-10 69.7 62 64.5
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.8e-07 60.5 39 66.7
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.0e-07 59.7 38 68.4
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 6.8e-07 58.5 58 62.1


User provided reference genes

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