Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 0.0e+00 1441.8 719 100.0
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 0.0e+00 1201.8 719 83.7
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 0.0e+00 1110.1 710 77.7
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 0.0e+00 1103.2 717 76.7
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 0.0e+00 1098.6 698 77.2
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 0.0e+00 1094.0 718 75.5
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 0.0e+00 1090.1 705 76.2
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 0.0e+00 1086.6 683 77.2
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 0.0e+00 1085.5 694 77.4
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 0.0e+00 1084.7 716 75.0
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 0.0e+00 1080.5 721 75.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 0.0e+00 1077.8 696 76.3
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 0.0e+00 1076.6 723 73.4
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 9.8e-312 1073.2 716 74.2
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 1.5e-311 1072.4 706 73.9
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 4.5e-308 1060.8 720 73.6
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.7e-307 1058.9 746 70.6
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 1.7e-307 1058.9 719 72.0
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 5.0e-307 1057.4 703 74.0
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 2.9e-302 1041.6 711 74.5
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 8.3e-302 1040.0 718 72.4
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 3.5e-300 1034.6 723 70.3
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 2.8e-297 1025.0 686 73.3
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 3.1e-296 1021.5 714 69.9
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 6.4e-294 1013.8 716 69.6
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 6.4e-294 1013.8 700 71.7
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 7.0e-293 1010.4 679 72.9
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 3.5e-292 1008.1 682 72.6
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 4.6e-292 1007.7 680 70.7
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 7.8e-292 1006.9 710 69.6
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 3.9e-291 1004.6 695 71.2
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 3.9e-291 1004.6 708 70.8
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.1e-289 998.8 711 69.3
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 2.8e-289 998.4 720 69.2
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 4.7e-289 997.7 719 67.0
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 4.7e-289 997.7 683 71.6
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 8.1e-289 996.9 668 71.7
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 8.1e-289 996.9 701 69.9
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.1e-288 996.5 680 72.2
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 6.8e-288 993.8 679 69.4
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 1.5e-287 992.6 679 70.0
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 2.6e-287 991.9 680 70.4
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 4.4e-287 991.1 680 69.6
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 7.5e-287 990.3 696 69.7
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.7e-286 989.2 676 70.1
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 3.7e-286 988.0 678 71.7
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 6.4e-286 987.3 663 71.3
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 8.3e-286 986.9 680 70.0
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.4e-285 986.1 680 69.9
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 1.4e-285 986.1 711 68.8
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.9e-285 985.7 680 70.4
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 1.9e-285 985.7 716 68.4
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 1.9e-285 985.7 690 71.4
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 5.4e-285 984.2 680 70.3
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 1.6e-284 982.6 716 68.3
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 2.7e-284 981.9 675 69.8
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 4.6e-284 981.1 698 68.8
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 1.0e-283 979.9 679 69.2
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 2.3e-283 978.8 614 79.0
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 1.9e-282 975.7 653 72.3
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 4.3e-282 974.5 696 69.4
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 4.3e-282 974.5 763 64.9
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 9.5e-282 973.4 680 70.0
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.6e-281 972.6 679 68.5
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 1.4e-280 969.5 699 66.2
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 2.0e-279 965.7 683 70.0
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 5.8e-279 964.1 709 68.4
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 1.4e-277 959.5 669 69.1
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 2.4e-277 958.7 698 69.3
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 5.4e-277 957.6 667 69.4
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 3.5e-276 954.9 698 67.0
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.3e-275 952.2 698 66.9
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 1.1e-274 949.9 681 67.4
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 3.5e-268 928.3 680 67.6
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 3.0e-267 925.2 711 66.0
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 8.1e-265 917.1 713 63.8
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 7.6e-263 910.6 531 85.7
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 1.7e-262 909.4 649 68.3
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 4.6e-260 901.4 713 65.8
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.1e-257 892.5 757 60.9
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 3.0e-251 872.1 687 62.9
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 9.6e-250 867.1 670 64.0
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 4.0e-248 861.7 700 63.1
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 3.8e-246 855.1 716 63.3
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 1.1e-240 837.0 556 71.4
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 1.4e-240 836.6 967 48.6
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 1.4e-240 836.6 668 60.3
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 4.2e-237 825.1 619 67.4
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.1e-236 822.8 515 77.3
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 7.9e-236 820.8 549 75.2
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.1e-232 810.4 571 69.4
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.4e-232 810.1 630 64.1
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 1.2e-228 797.0 671 60.1
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.2e-215 753.8 670 57.9
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 3.2e-205 719.2 577 61.5
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 2.6e-194 682.9 637 56.4
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 6.6e-190 668.3 432 74.3
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 2.5e-189 666.4 389 83.8
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.3e-177 627.5 675 48.3
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 4.6e-175 619.0 694 46.1
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.4e-155 554.3 421 62.2
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.6e-143 514.2 369 66.4
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 2.1e-140 503.8 392 65.6
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 3.5e-135 486.5 517 47.4
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 1.7e-129 467.6 355 65.1
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 1.4e-123 448.0 325 68.6
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.2e-119 434.9 278 78.8
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.5e-114 417.9 437 47.8
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 6.3e-108 396.0 310 61.6
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.9e-105 387.1 331 61.6
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 3.6e-103 380.2 233 81.1
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 2.8e-100 370.5 285 62.1
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 1.7e-97 361.3 618 38.2
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 9.8e-93 345.5 354 51.1
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 4.8e-92 343.2 434 44.2
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 7.7e-82 309.3 432 42.4
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 7.0e-75 286.2 282 53.9
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-72 278.9 385 38.7
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 3.6e-71 273.9 649 31.3
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 4.4e-61 240.4 540 31.9
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 3.5e-50 204.1 279 43.0
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 1.2e-47 195.7 355 39.4
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 7.8e-42 176.4 137 62.0
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 8.7e-41 172.9 114 73.7
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.2e-37 162.5 215 43.7
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 9.9e-37 159.5 223 41.7
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.3e-36 159.1 111 74.8
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 1.9e-35 155.2 103 75.7
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 7.1e-35 153.3 216 42.1
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 1.1e-27 129.4 87 70.1
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.9e-27 128.6 125 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 3.1e-22 111.3 74 70.3
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.1e-19 102.8 157 45.2
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 9.3e-19 99.8 427 24.4
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.3e-17 95.9 112 42.9
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 5.1e-17 94.0 390 26.2
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.3e-16 91.3 88 50.0
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 7.4e-16 90.1 65 70.8
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.7e-15 87.8 64 64.1
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.1e-14 86.3 46 80.4
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.1e-14 84.7 53 67.9
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.1e-14 84.3 46 78.3
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.5e-13 80.9 46 76.1
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.0e-12 79.7 50 70.0
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 4.2e-11 74.3 58 56.9
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 1.5e-08 65.9 53 66.0
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 1.6e-07 62.4 44 68.2
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 3.7e-07 61.2 206 30.6


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