Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 6.6e-76 287.3 151 100.0
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 6.6e-76 287.3 151 100.0
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 1.9e-75 285.8 151 99.3
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 4.3e-51 204.9 143 74.8
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 9.6e-51 203.8 143 72.7
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 5.8e-48 194.5 143 69.9
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 1.8e-44 183.0 139 69.8
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 8.7e-44 180.6 142 66.2
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 3.3e-43 178.7 140 65.0
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 7.4e-43 177.6 142 64.8
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 9.6e-43 177.2 135 68.9
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 1.6e-42 176.4 149 64.4
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 2.8e-42 175.6 142 64.8
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 3.7e-42 175.3 144 66.0
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.1e-41 173.7 131 70.2
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 9.0e-41 170.6 142 62.7
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 9.0e-41 170.6 142 62.7
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 4.5e-40 168.3 146 61.6
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 1.0e-39 167.2 139 65.5
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 2.2e-39 166.0 146 61.6
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 2.2e-39 166.0 141 62.4
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 3.8e-39 165.2 129 68.2
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 3.8e-39 165.2 130 68.5
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 5.0e-39 164.9 149 60.4
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 6.5e-39 164.5 131 67.2
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 1.1e-38 163.7 130 63.8
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 1.9e-38 162.9 129 65.9
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 3.2e-38 162.2 138 60.9
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 9.3e-38 160.6 138 60.1
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 9.3e-38 160.6 127 63.8
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 1.2e-37 160.2 159 59.1
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 1.6e-37 159.8 138 61.6
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 1.6e-37 159.8 136 63.2
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 2.1e-37 159.5 146 61.6
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 6.1e-37 157.9 130 65.4
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 1.1e-35 153.7 134 64.9
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 1.5e-35 153.3 144 59.0
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 4.3e-35 151.8 135 60.0
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 7.4e-35 151.0 137 62.0
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 9.7e-35 150.6 135 64.4
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 1.3e-34 150.2 130 66.2
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 1.6e-34 149.8 135 63.0
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 1.6e-34 149.8 140 58.6
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 1.6e-34 149.8 138 58.7
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 1.6e-34 149.8 132 59.8
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 2.2e-34 149.4 137 60.6
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 2.8e-34 149.1 129 65.1
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 2.8e-34 149.1 131 58.8
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 2.8e-34 149.1 132 59.8
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 4.8e-34 148.3 129 63.6
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 6.3e-34 147.9 132 60.6
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 1.8e-33 146.4 119 64.7
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 3.1e-33 145.6 129 63.6
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 4.1e-33 145.2 129 63.6
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 4.1e-33 145.2 129 63.6
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 5.3e-33 144.8 129 62.8
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 5.3e-33 144.8 129 62.8
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 5.3e-33 144.8 117 64.1
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 1.2e-32 143.7 137 59.9
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 2.6e-32 142.5 132 61.4
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 2.6e-32 142.5 130 64.6
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 2.6e-32 142.5 130 64.6
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 3.4e-32 142.1 152 57.2
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 5.9e-32 141.4 129 58.9
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 5.9e-32 141.4 129 59.7
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 7.7e-32 141.0 129 58.1
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 7.7e-32 141.0 117 64.1
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 1.7e-31 139.8 130 55.4
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 2.2e-31 139.4 124 62.1
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 2.2e-31 139.4 136 59.6
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 3.8e-31 138.7 132 60.6
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 3.8e-31 138.7 129 62.0
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 6.5e-31 137.9 129 58.1
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 1.1e-30 137.1 131 58.8
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.9e-30 136.3 136 56.6
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 1.9e-30 136.3 139 54.7
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 2.5e-30 136.0 138 55.1
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 3.2e-30 135.6 133 59.4
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 1.2e-29 133.7 135 57.8
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 1.6e-29 133.3 135 53.3
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 6.1e-29 131.3 106 63.2
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 1.0e-28 130.6 128 50.0
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 1.4e-28 130.2 145 53.1
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 2.3e-28 129.4 106 65.1
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 2.3e-28 129.4 142 51.4
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 3.0e-28 129.0 129 55.8
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 8.8e-28 127.5 134 54.5
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 1.1e-27 127.1 109 65.1
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 1.3e-26 123.6 137 49.6
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 2.8e-26 122.5 107 59.8
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 4.8e-26 121.7 108 59.3
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 8.2e-26 120.9 126 54.0
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 1.2e-24 117.1 134 48.5
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 6.5e-23 111.3 118 52.5
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 3.9e-20 102.1 110 50.0
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 4.4e-19 98.6 140 41.4
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 1.1e-17 94.0 119 43.7
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 2.0e-11 73.2 55 65.5
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 1.8e-09 66.6 95 35.8
VMungo0540G0387 Vigna mungo HOM05D000789 ORTHO05D000897 5.5e-06 55.1 94 35.1


User provided reference genes

Program Settings