Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1553.5 775 100.0
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1549.6 775 99.7
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1365.9 776 88.1
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1314.3 776 85.2
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1294.3 776 82.7
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1280.8 776 81.8
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1279.2 776 82.3
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1273.8 777 82.4
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1271.1 776 81.3
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1263.1 778 82.1
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1260.0 778 81.5
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1258.4 794 80.0
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1253.4 777 81.9
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1253.0 776 80.0
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1237.6 778 79.0
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1236.5 777 79.5
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1234.2 777 80.1
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1233.0 776 79.0
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1230.7 781 79.1
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1228.0 777 80.2
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1226.5 787 79.3
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1223.4 779 77.5
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1212.2 776 78.5
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1211.8 777 77.1
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1207.6 775 78.3
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1204.1 777 76.8
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1199.5 773 78.9
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 0.0e+00 1198.0 788 75.5
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1196.0 777 76.1
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1195.6 777 78.1
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1184.1 802 73.7
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 0.0e+00 1179.9 750 79.7
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1178.3 879 70.1
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 0.0e+00 1178.3 776 76.4
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 0.0e+00 1177.9 776 77.1
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 0.0e+00 1177.5 721 83.4
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 0.0e+00 1175.2 777 75.7
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 0.0e+00 1175.2 867 70.0
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 0.0e+00 1157.5 777 73.6
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 0.0e+00 1154.4 776 74.9
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 0.0e+00 1153.7 777 74.1
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 0.0e+00 1148.3 777 73.6
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 0.0e+00 1146.0 776 72.8
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 0.0e+00 1146.0 776 72.9
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 0.0e+00 1140.6 779 73.4
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 0.0e+00 1127.5 778 72.6
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 0.0e+00 1126.7 771 72.8
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 0.0e+00 1125.9 776 74.0
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 0.0e+00 1122.5 779 71.8
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 0.0e+00 1115.9 775 71.6
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 0.0e+00 1115.5 777 71.8
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 0.0e+00 1110.1 776 72.7
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 0.0e+00 1108.2 779 71.8
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 0.0e+00 1106.7 771 71.2
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 0.0e+00 1105.1 776 72.7
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 0.0e+00 1103.6 782 70.2
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 0.0e+00 1102.0 775 71.1
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 0.0e+00 1101.7 771 70.8
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 0.0e+00 1101.7 776 70.4
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 0.0e+00 1099.3 779 71.6
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 0.0e+00 1097.4 777 69.2
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 0.0e+00 1097.0 777 70.1
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 0.0e+00 1095.9 778 70.3
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 0.0e+00 1095.9 777 69.0
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 0.0e+00 1094.3 777 69.0
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 0.0e+00 1093.2 836 66.6
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 0.0e+00 1092.0 777 70.0
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 0.0e+00 1091.3 739 75.2
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 0.0e+00 1090.5 786 69.2
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 0.0e+00 1087.4 776 70.2
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 0.0e+00 1086.2 782 70.8
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 0.0e+00 1078.5 782 71.1
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 0.0e+00 1076.2 777 69.2
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 5.3e-312 1073.5 776 68.9
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.1e-311 1073.2 878 64.1
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 5.8e-309 1063.9 803 67.4
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.5e-304 1049.3 780 69.6
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 1.2e-301 1039.6 776 66.9
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 2.0e-301 1038.9 777 67.2
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 6.0e-298 1027.3 776 66.5
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.3e-297 1026.2 785 67.6
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 2.3e-289 998.8 782 64.2
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 5.8e-285 984.2 745 66.2
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 2.2e-271 939.1 782 62.9
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 5.1e-265 917.9 794 60.6
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.3e-263 913.3 770 61.8
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 6.3e-239 831.2 538 79.0
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.5e-235 820.1 539 77.4
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 8.6e-228 794.3 769 52.7
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-220 770.4 498 75.5
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.5e-213 745.7 479 78.1
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 7.5e-200 701.4 595 62.7
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.2e-197 694.1 774 51.2
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-193 681.0 435 76.1
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 4.9e-159 565.8 796 40.3
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.5e-158 563.5 404 71.8
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 4.6e-157 559.3 514 57.6
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 2.3e-156 557.0 790 40.9
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 8.8e-148 528.5 506 60.1
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 4.7e-117 426.4 747 36.1
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-111 408.3 444 54.3
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.4e-108 398.3 835 32.1
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 2.3e-108 397.5 449 51.7
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 4.1e-105 386.7 378 54.2
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.2e-98 364.4 256 71.9
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.0e-95 355.5 190 83.2
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 8.1e-93 345.9 381 52.0
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 4.9e-90 336.7 265 67.2
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-81 308.5 182 84.1
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 6.8e-76 289.7 393 40.7
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.3e-74 285.4 229 60.7
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 4.2e-65 253.8 174 79.3
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.9e-62 245.0 769 27.2
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.4e-52 212.2 323 44.6
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 2.9e-50 204.5 225 48.9
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 2.8e-37 161.4 460 27.4
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 4.8e-37 160.6 258 41.1
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.1e-36 157.9 85 85.9
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 4.1e-36 157.5 109 65.1
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.9e-34 151.4 85 83.5
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.5e-34 150.2 127 64.6
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.9e-33 148.7 172 50.0
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.4e-33 146.4 85 81.2
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 2.1e-32 145.2 109 61.5
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 2.3e-31 141.7 86 77.9
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 3.0e-31 141.4 109 60.6
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 1.5e-30 139.0 515 24.3
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.3e-30 137.9 84 78.6
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 9.7e-30 136.3 71 87.3
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 2.2e-29 135.2 500 24.6
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 1.4e-28 132.5 85 77.6
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.3e-28 130.6 90 66.7
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.5e-27 129.0 79 81.0
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 5.9e-27 127.1 83 75.9
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.3e-26 125.9 61 95.1
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 2.1e-24 118.6 61 90.2
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 2.7e-24 118.2 329 31.0
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 5.1e-23 114.0 61 80.3
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.8e-20 105.5 55 87.3
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.1e-20 104.4 61 82.0
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.6e-19 102.4 85 63.5
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 5.0e-18 97.4 55 85.5
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 5.0e-18 97.4 55 85.5
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 2.5e-17 95.1 78 62.8
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 7.2e-17 93.6 61 68.9
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 2.1e-16 92.0 80 53.8
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 3.6e-16 91.3 78 53.8
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.7e-14 83.2 55 67.3
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.2e-13 82.0 61 62.3
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.7e-13 81.3 55 65.5
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.2e-11 76.3 85 49.4
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-11 76.3 60 63.3
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-08 66.2 82 51.2
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 2.1e-08 65.5 46 67.4
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.4e-07 62.8 31 90.3
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 6.8e-07 60.5 31 80.6


User provided reference genes

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