Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 5.9e-141 504.2 257 100.0
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 1.6e-82 310.1 260 68.8
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 5.2e-81 305.1 260 67.7
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.2e-80 303.9 262 68.7
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 2.4e-78 296.2 258 66.3
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 7.1e-78 294.7 258 66.3
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 3.0e-76 289.3 258 65.1
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 2.8e-74 282.7 258 62.4
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 3.1e-73 279.3 263 62.4
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 1.2e-72 277.3 263 62.7
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 3.4e-72 275.8 261 63.2
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 1.3e-71 273.9 257 63.0
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.9e-70 270.0 262 62.2
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.9e-70 270.0 262 62.2
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 1.9e-70 270.0 267 60.7
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 2.4e-70 269.6 262 61.1
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 1.0e-68 264.2 262 61.1
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 1.0e-68 264.2 274 58.8
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.7e-68 263.5 260 60.0
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.3e-68 263.1 259 61.0
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 5.1e-68 261.9 260 60.0
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 4.3e-67 258.8 269 58.7
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.2e-66 257.3 264 60.2
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 2.8e-66 256.1 264 59.8
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.0e-65 252.3 264 59.5
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.2e-64 250.8 283 55.5
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 2.0e-64 250.0 282 55.3
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 2.6e-64 249.6 262 59.9
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 5.8e-64 248.4 275 56.4
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 7.6e-64 248.1 163 82.8
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 1.3e-63 247.3 277 56.3
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 4.9e-63 245.4 264 56.8
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 1.1e-62 244.2 277 56.3
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 9.3e-62 241.1 271 56.5
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 9.3e-62 241.1 263 55.9
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 6.0e-61 238.4 269 55.4
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 6.0e-61 238.4 257 55.3
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 7.8e-61 238.0 286 53.5
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 1.0e-60 237.7 262 58.4
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.0e-60 237.7 270 55.6
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 1.7e-60 236.9 247 58.7
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 2.3e-60 236.5 261 54.8
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 2.3e-60 236.5 264 55.7
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 3.0e-60 236.1 258 55.8
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 3.9e-60 235.7 252 54.4
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 3.9e-60 235.7 272 55.1
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 3.9e-60 235.7 263 55.5
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 5.1e-60 235.3 258 57.4
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 5.1e-60 235.3 258 57.4
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 5.1e-60 235.3 257 56.0
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 5.1e-60 235.3 260 56.2
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 6.6e-60 235.0 258 55.8
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 1.1e-59 234.2 260 56.5
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 1.5e-59 233.8 257 55.6
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.9e-59 233.4 257 54.9
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 1.9e-59 233.4 257 55.3
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 2.5e-59 233.0 269 55.0
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 2.5e-59 233.0 302 50.3
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 3.3e-59 232.6 243 58.0
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 4.3e-59 232.3 259 55.6
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 7.3e-59 231.5 260 55.4
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 7.3e-59 231.5 260 56.2
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 3.6e-58 229.2 266 54.1
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 4.8e-58 228.8 266 53.0
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 4.8e-58 228.8 272 52.6
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 6.2e-58 228.4 222 61.3
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 8.1e-58 228.0 264 53.4
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 2.4e-57 226.5 267 54.3
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 2.4e-57 226.5 258 53.9
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 5.3e-57 225.3 249 59.0
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 9.0e-57 224.6 275 53.8
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 2.6e-56 223.0 255 54.9
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.6e-56 223.0 286 51.7
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 4.5e-56 222.2 328 47.3
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 5.8e-56 221.9 235 57.9
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 3.8e-55 219.2 264 51.9
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 8.4e-55 218.0 220 59.1
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.1e-54 217.6 260 51.9
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 1.9e-54 216.9 261 52.1
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 1.9e-54 216.9 265 51.3
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 5.4e-54 215.3 251 54.6
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 3.5e-53 212.6 264 51.1
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 4.6e-53 212.2 258 51.9
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 6.0e-53 211.8 261 49.8
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 3.0e-52 209.5 261 51.0
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 3.0e-52 209.5 172 69.8
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.9e-52 209.1 247 51.8
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 6.7e-52 208.4 262 51.9
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 1.9e-51 206.8 200 61.5
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 9.6e-51 204.5 260 50.4
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 9.6e-51 204.5 261 50.6
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 9.6e-51 204.5 239 52.7
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.3e-50 204.1 180 63.3
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.3e-50 204.1 258 51.6
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 1.6e-50 203.8 257 52.1
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 2.1e-50 203.4 261 51.3
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 2.1e-50 203.4 261 50.2
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 2.1e-50 203.4 261 50.2
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 2.8e-50 203.0 261 49.8
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 2.8e-50 203.0 265 50.2
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 6.2e-50 201.8 261 49.8
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 6.2e-50 201.8 265 49.1
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 1.1e-49 201.1 263 50.2
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 1.4e-49 200.7 170 66.5
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 1.8e-49 200.3 260 50.0
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 2.4e-49 199.9 262 49.2
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 2.4e-49 199.9 262 50.4
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 3.1e-49 199.5 264 49.6
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 9.0e-49 198.0 173 65.9
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 2.0e-48 196.8 241 51.5
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 5.8e-48 195.3 164 66.5
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 9.9e-48 194.5 244 55.7
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 8.4e-47 191.4 170 63.5
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 1.9e-46 190.3 175 65.7
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 6.0e-45 185.3 165 65.5
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 6.0e-45 185.3 283 45.9
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 7.9e-45 184.9 190 53.2
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 7.9e-45 184.9 258 47.3
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.0e-44 184.5 194 54.1
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 3.0e-44 183.0 196 54.1
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 3.9e-44 182.6 197 54.8
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 1.5e-43 180.6 262 42.7
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.5e-43 180.6 164 64.6
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.1e-41 174.5 232 46.1
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 1.8e-41 173.7 260 47.3
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.8e-41 173.7 162 63.0
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.4e-41 173.3 162 63.6
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 9.0e-41 171.4 193 53.4
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 2.6e-40 169.9 243 46.9
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.1e-38 164.5 251 45.8
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 1.9e-38 163.7 123 72.4
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 4.6e-37 159.1 205 47.3
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 3.3e-35 152.9 175 53.7
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 4.3e-35 152.5 184 48.9
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 9.7e-35 151.4 211 46.4
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 3.7e-34 149.4 212 44.8
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 2.4e-33 146.7 239 42.3
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 2.4e-33 146.7 187 50.3
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 2.0e-32 143.7 196 47.4
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 4.5e-32 142.5 197 49.2
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 1.0e-31 141.4 180 47.8
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.0e-31 141.4 187 45.5
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 3.6e-29 132.9 183 41.5
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 6.9e-25 118.6 175 45.7
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.9e-20 102.8 94 67.0
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 6.7e-20 102.1 182 36.8
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 4.2e-14 82.8 47 85.1
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 8.8e-12 75.1 57 63.2
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 4.4e-11 72.8 208 29.3
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 7.4e-11 72.0 138 34.8
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 1.3e-10 71.2 100 47.0
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.2e-08 64.7 35 94.3
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 7.7e-08 62.0 39 71.8
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 1.3e-07 61.2 166 26.5


User provided reference genes

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