Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 2.1e-203 712.2 372 100.0
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 1.1e-156 557.0 363 78.8
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 1.8e-154 549.7 363 78.2
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 4.3e-153 545.0 358 81.0
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 6.9e-151 537.7 360 75.6
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 6.9e-151 537.7 360 75.6
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.5e-150 536.6 362 75.4
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.3e-149 533.5 362 74.9
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 3.8e-149 531.9 374 73.0
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 2.5e-148 529.3 372 74.2
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 1.6e-147 526.6 370 74.3
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 1.4e-146 523.5 366 74.0
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 1.1e-145 520.4 379 72.0
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 1.1e-145 520.4 379 72.0
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 2.6e-145 519.2 376 72.9
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 1.3e-144 516.9 378 72.2
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 2.8e-144 515.8 358 73.5
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 3.7e-144 515.4 366 72.7
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 1.4e-143 513.5 367 71.7
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 1.4e-143 513.5 368 71.2
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.8e-143 513.1 369 72.4
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 5.3e-143 511.5 369 71.5
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.2e-142 510.4 373 71.3
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.2e-142 510.4 373 71.3
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.5e-142 510.0 357 71.7
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 2.0e-142 509.6 367 72.2
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 4.5e-142 508.4 356 73.3
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.3e-141 506.9 362 72.9
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.3e-141 506.9 361 72.6
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 2.9e-141 505.8 367 71.9
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 2.9e-141 505.8 356 73.3
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 3.8e-141 505.4 355 72.4
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 8.5e-141 504.2 366 70.8
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 1.1e-140 503.8 357 71.1
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 2.5e-140 502.7 361 70.6
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 3.2e-140 502.3 357 71.1
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 3.2e-140 502.3 371 70.1
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 4.2e-140 501.9 371 71.7
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 9.4e-140 500.7 368 71.2
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 9.4e-140 500.7 367 71.7
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 2.1e-139 499.6 355 71.5
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 2.1e-139 499.6 370 70.5
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 2.7e-139 499.2 363 69.4
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 2.7e-139 499.2 370 71.6
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 3.6e-139 498.8 365 70.4
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 4.7e-139 498.4 355 71.3
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 6.1e-139 498.0 365 69.0
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 1.8e-138 496.5 359 68.8
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.3e-138 496.1 358 69.8
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 3.0e-138 495.7 383 68.4
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.1e-137 493.8 361 69.8
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 1.5e-137 493.4 365 68.5
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 2.0e-137 493.0 361 68.7
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.0e-137 493.0 360 69.2
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 5.7e-137 491.5 364 68.1
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 1.3e-136 490.3 365 68.2
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 1.7e-136 490.0 370 68.4
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 4.8e-136 488.4 364 67.0
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 4.8e-136 488.4 357 69.5
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 6.3e-136 488.0 368 68.8
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 8.2e-136 487.6 360 67.2
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.1e-135 487.3 302 79.8
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 1.4e-135 486.9 366 68.3
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 1.8e-135 486.5 370 68.1
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 1.8e-135 486.5 370 68.1
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 1.8e-135 486.5 357 68.1
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 1.8e-135 486.5 355 69.6
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 1.8e-135 486.5 355 69.6
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 2.4e-135 486.1 367 67.3
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 2.4e-135 486.1 368 67.4
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 9.1e-135 484.2 355 69.3
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 1.2e-134 483.8 376 67.0
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 2.6e-134 482.6 363 68.6
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 2.6e-134 482.6 312 77.6
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 3.5e-134 482.3 372 69.9
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 7.7e-134 481.1 359 68.2
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 2.2e-133 479.6 358 69.8
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 3.8e-133 478.8 359 68.8
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 1.9e-132 476.5 385 65.5
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 5.5e-132 474.9 356 68.5
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 7.2e-132 474.6 345 73.0
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 7.2e-132 474.6 368 66.0
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 1.2e-131 473.8 355 68.2
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 2.7e-131 472.6 352 68.2
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 6.7e-130 468.0 359 65.7
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 2.6e-129 466.1 359 67.1
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 4.4e-129 465.3 360 69.4
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 1.1e-127 460.7 443 58.7
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.4e-127 460.3 361 65.4
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 3.5e-126 455.7 339 70.2
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 5.9e-126 454.9 361 64.5
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 2.2e-125 453.0 370 64.3
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 2.2e-125 453.0 359 64.9
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 2.2e-125 453.0 340 69.1
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 3.8e-125 452.2 355 65.6
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 1.8e-122 443.4 329 71.1
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 6.8e-122 441.4 360 64.4
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 2.0e-121 439.9 362 62.4
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 9.8e-121 437.6 359 63.8
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 3.5e-118 429.1 336 67.6
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.7e-117 426.8 361 61.2
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 3.2e-116 422.5 296 75.7
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 1.2e-115 420.6 371 61.5
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 1.6e-115 420.2 368 61.4
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 7.0e-111 404.8 355 60.3
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 1.2e-110 404.1 361 58.7
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 2.9e-109 399.4 355 59.2
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 5.6e-108 395.2 307 70.0
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 1.0e-106 391.0 296 70.6
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.4e-106 390.6 304 62.2
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 2.6e-105 386.3 358 57.0
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 4.4e-105 385.6 305 61.0
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.6e-102 377.1 330 60.9
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 7.3e-100 368.2 192 90.1
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 3.6e-99 365.9 236 76.7
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 6.2e-99 365.2 361 55.7
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 2.6e-97 359.8 192 87.5
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 7.5e-97 358.2 358 53.6
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 3.2e-95 352.8 358 54.2
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 7.0e-95 351.7 310 58.1
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 1.2e-94 350.9 307 56.7
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 4.6e-94 349.0 190 86.8
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 5.6e-92 342.0 302 55.6
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 4.7e-91 339.0 291 59.5
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.8e-90 337.0 314 52.9
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 1.3e-67 261.2 151 81.5
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 2.3e-61 240.4 218 58.7
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.3e-60 236.5 124 87.1
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 5.8e-49 199.1 211 51.7
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 7.1e-47 192.2 98 88.8
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.5e-44 183.7 91 90.1
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 6.9e-42 175.6 190 51.6
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 5.9e-33 146.0 154 57.8
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.5e-31 140.6 101 73.3
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 7.9e-30 135.6 241 40.7
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 3.0e-29 133.7 88 73.9
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 4.1e-26 123.2 71 74.6
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 5.3e-26 122.9 164 45.7
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 6.9e-26 122.5 71 74.6
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 9.1e-26 122.1 170 46.5
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 8.5e-16 89.0 43 95.3
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 8.8e-13 79.0 93 48.4


User provided reference genes

Program Settings