Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p050823 Quercus lobata HOM05D000549 ORTHO05D006874 1.7e-42 175.6 89 100.0
QL03p050834 Quercus lobata HOM05D000549 ORTHO05D006874 2.8e-26 121.7 69 89.9
Eucgr.H04584 Eucalyptus grandis HOM05D000549 ORTHO05D006874 2.0e-24 115.5 69 84.1
Eucgr.K02175 Eucalyptus grandis HOM05D000549 ORTHO05D006874 2.0e-24 115.5 69 84.1
Eucgr.K02180 Eucalyptus grandis HOM05D000549 ORTHO05D006874 2.7e-24 115.2 69 84.1
Cfa009408 Carpinus fangiana HOM05D000549 ORTHO05D006874 2.2e-23 112.1 69 81.2
Sc12g0006910 Simmondsia chinensis HOM05D000549 ORTHO05D006874 5.0e-23 110.9 78 70.5
FvH4_4g23150 Fragaria vesca HOM05D000549 ORTHO05D006874 1.5e-22 109.4 69 79.7
FAN12G2279 Fragaria x ananassa HOM05D000549 ORTHO05D006874 1.5e-22 109.4 69 79.7
Haze_12466 Corylus avellana HOM05D000549 ORTHO05D006874 1.9e-22 109.0 69 78.3
RcHm_v2.0_Chr4g0429491 Rosa chinensis HOM05D000549 ORTHO05D006874 1.9e-22 109.0 69 78.3
Sabra01G0043900 Salix brachista HOM05D000549 ORTHO05D006874 4.2e-22 107.8 69 78.3
CiPaw.05G104900 Carya illinoinensis HOM05D000549 ORTHO05D006874 5.5e-22 107.5 69 78.3
Manes.12G006600 Manihot esculenta HOM05D000549 ORTHO05D006874 5.5e-22 107.5 69 79.7
Peaxi162Scf00128g01626 Petunia axillaris HOM05D000549 ORTHO05D006874 5.5e-22 107.5 75 74.7
Hund06115 Selenicereus undatus HOM05D000549 ORTHO05D006874 5.5e-22 107.5 73 76.7
MD13G1124500 Malus domestica HOM05D000549 ORTHO05D006874 9.4e-22 106.7 69 78.3
Potri.001G061000 Populus trichocarpa HOM05D000549 ORTHO05D006874 9.4e-22 106.7 69 76.8
Sopen05g019110 Solanum pennellii HOM05D000549 ORTHO05D006874 9.4e-22 106.7 69 78.3
Atru.chr11.2394 Acer truncatum HOM05D000549 ORTHO05D006874 1.2e-21 106.3 69 75.4
CSS0027356 Camellia sinensis var. sinensis HOM05D000549 ORTHO05D006874 1.2e-21 106.3 69 72.5
CSS0046508 Camellia sinensis var. sinensis HOM05D000549 ORTHO05D006874 1.2e-21 106.3 69 72.5
CiPaw.06G106600 Carya illinoinensis HOM05D000549 ORTHO05D006874 1.2e-21 106.3 69 76.8
CAN.G206.147 Capsicum annuum HOM05D000549 ORTHO05D006874 1.6e-21 105.9 69 75.4
Dinv07034 Davidia involucrata HOM05D000549 ORTHO05D006874 1.6e-21 105.9 69 75.4
Solyc05g024235.1 Solanum lycopersicum HOM05D000549 ORTHO05D006874 1.6e-21 105.9 69 78.3
TAR374G0112 Trochodendron aralioides HOM05D000549 ORTHO05D006874 3.6e-21 104.8 69 73.9
Duzib248G1635 Durio zibethinus HOM05D000549 ORTHO05D006874 4.7e-21 104.4 69 78.3
Lj6C833T8 Lonicera japonica HOM05D000549 ORTHO05D006874 4.7e-21 104.4 69 76.8
Prupe.1G220600 Prunus persica HOM05D000549 ORTHO05D006874 4.7e-21 104.4 69 75.4
Carub.0008s0541 Capsella rubella HOM05D000549 ORTHO05D006874 6.1e-21 104.0 69 76.8
Nn5g27151 Nelumbo nucifera HOM05D000549 ORTHO05D006874 8.0e-21 103.6 69 73.9
Aqoxy5G03240 Aquilegia oxysepala HOM05D000549 ORTHO05D006874 1.4e-20 102.8 69 75.4
Hma1.2p1_1436F.1_g283180 Hydrangea macrophylla HOM05D000549 ORTHO05D006874 1.4e-20 102.8 69 76.8
Sp2g08090 Schrenkiella parvula HOM05D000549 ORTHO05D006874 1.4e-20 102.8 69 75.4
BcaC04g21935 Brassica carinata HOM05D000549 ORTHO05D006874 1.8e-20 102.4 69 75.4
CDE05G0550 Ceratophyllum demersum HOM05D000549 ORTHO05D006874 1.8e-20 102.4 69 73.9
Ciclev10032364m.g Citrus clementina HOM05D000549 ORTHO05D006874 1.8e-20 102.4 69 73.9
EL10Ac6g13564 Beta vulgaris HOM05D000549 ORTHO05D006874 2.3e-20 102.1 73 71.2
BcaC04g21936 Brassica carinata HOM05D000549 ORTHO05D006874 2.3e-20 102.1 69 75.4
C09p25670 Brassica napus HOM05D000549 ORTHO05D006874 2.3e-20 102.1 69 75.4
BolC9t55470H Brassica oleracea HOM05D000549 ORTHO05D006874 2.3e-20 102.1 69 75.4
CANSAT01G0648 Cannabis sativa HOM05D000549 ORTHO05D006874 2.3e-20 102.1 69 73.9
CANSAT01G1614 Cannabis sativa HOM05D000549 ORTHO05D006874 2.3e-20 102.1 69 73.9
Nitab4.5_0000340g0140 Nicotiana tabacum HOM05D000549 ORTHO05D006874 2.3e-20 102.1 69 72.5
Sed0021300 Sechium edule HOM05D000549 ORTHO05D006874 2.3e-20 102.1 67 77.6
AT5G43280 Arabidopsis thaliana HOM05D000549 ORTHO05D006874 3.0e-20 101.7 69 75.4
Hma1.2p1_1436F.1_g283170 Hydrangea macrophylla HOM05D000549 ORTHO05D006874 3.0e-20 101.7 62 82.3
Rhsim12G0021800 Rhododendron simsii HOM05D000549 ORTHO05D006874 3.0e-20 101.7 69 72.5
vmacro01035 Vaccinium macrocarpon HOM05D000549 ORTHO05D006874 3.0e-20 101.7 69 69.6
Actinidia30611 Actinidia chinensis HOM05D000549 ORTHO05D006874 4.0e-20 101.3 69 71.0
BcaB07g31019 Brassica carinata HOM05D000549 ORTHO05D006874 4.0e-20 101.3 62 80.6
Gohir.D13G158000 Gossypium hirsutum HOM05D000549 ORTHO05D006874 4.0e-20 101.3 69 73.9
Gorai.013G178700 Gossypium raimondii HOM05D000549 ORTHO05D006874 4.0e-20 101.3 69 73.9
GSVIVG01000939001 Vitis vinifera HOM05D000549 ORTHO05D006874 4.0e-20 101.3 69 71.0
A09p20250 Brassica napus HOM05D000549 ORTHO05D006874 5.2e-20 100.9 69 73.9
COL.COLO4_17381 Corchorus olitorius HOM05D000549 ORTHO05D006874 5.2e-20 100.9 69 73.9
Sed0008053 Sechium edule HOM05D000549 ORTHO05D006874 6.8e-20 100.5 94 60.6
Aa31LG9G13380 Aethionema arabicum HOM05D000549 ORTHO05D006874 8.8e-20 100.1 69 72.5
AUR62005679 Chenopodium quinoa HOM05D000549 ORTHO05D006874 8.8e-20 100.1 73 68.5
TWI18G0387 Tripterygium wilfordii HOM05D000549 ORTHO05D006874 8.8e-20 100.1 69 69.6
ClCG07G015310 Citrullus lanatus HOM05D000549 ORTHO05D006874 1.2e-19 99.8 63 79.4
PGR119G1868 Punica granatum HOM05D000549 ORTHO05D006874 1.2e-19 99.8 69 66.7
SEGI_23101 Sequoiadendron giganteum HOM05D000549 ORTHO05D006874 1.2e-19 99.8 69 73.9
BraA09t37638Z Brassica rapa HOM05D000549 ORTHO05D006874 1.5e-19 99.4 69 73.9
Thhalv10003257m.g Eutrema salsugineum HOM05D000549 ORTHO05D006874 1.5e-19 99.4 69 72.5
PSO478G2361 Papaver somniferum HOM05D000549 ORTHO05D006874 1.5e-19 99.4 69 75.4
Thecc.02G198300 Theobroma cacao HOM05D000549 ORTHO05D006874 1.5e-19 99.4 69 72.5
MELO3C017752.2 Cucumis melo HOM05D000549 ORTHO05D006874 2.0e-19 99.0 66 75.8
Gohir.A13G153400 Gossypium hirsutum HOM05D000549 ORTHO05D006874 2.0e-19 99.0 69 72.5
AL8G17180 Arabidopsis lyrata HOM05D000549 ORTHO05D006874 2.6e-19 98.6 69 73.9
Cc11_g17400 Coffea canephora HOM05D000549 ORTHO05D006874 2.6e-19 98.6 69 71.0
CsaV3_4G002910 Cucumis sativus L. HOM05D000549 ORTHO05D006874 3.4e-19 98.2 66 75.8
AUR62028876 Chenopodium quinoa HOM05D000549 ORTHO05D006874 5.7e-19 97.4 73 68.5
MD16G1125600 Malus domestica HOM05D000549 ORTHO05D006874 7.5e-19 97.1 69 71.0
CARHR180490 Cardamine hirsuta HOM05D000549 ORTHO05D006874 9.8e-19 96.7 69 71.0
DCAR_031208 Daucus carota HOM05D000549 ORTHO05D006874 2.8e-18 95.1 62 72.6
MBI11_g29216_MAGBIO Magnolia biondii HOM05D000549 ORTHO05D006874 2.8e-18 95.1 69 65.2
AagrBONN_evm.TU.Sc2ySwM_117.905 Anthoceros agrestis HOM05D000549 ORTHO05D006874 3.7e-18 94.7 70 68.6
Lsat_1_v5_gn_4_1980 Lactuca sativa HOM05D000549 ORTHO05D006874 3.7e-18 94.7 69 71.0
Lalb_Chr21g0307751 Lupinus albus HOM05D000549 ORTHO05D006874 4.8e-18 94.4 66 68.2
Medtr3g085700 Medicago truncatula HOM05D000549 ORTHO05D006874 4.8e-18 94.4 69 69.6
arahy.Tifrunner.gnm1.ann1.LK9N17 Arachis hypogaea HOM05D000549 ORTHO05D006874 1.1e-17 93.2 73 64.4
SHI07401 Sapria himalayana HOM05D000549 ORTHO05D006874 1.1e-17 93.2 63 71.4
Migut.E00002 Erythranthe guttata HOM05D000549 ORTHO05D006874 1.4e-17 92.8 69 63.8
VMungo0720G0878 Vigna mungo HOM05D000549 ORTHO05D006874 1.4e-17 92.8 73 67.1
arahy.Tifrunner.gnm1.ann1.MI1RE4 Arachis hypogaea HOM05D000549 ORTHO05D006874 1.8e-17 92.4 73 63.0
Glyma.03G119400 Glycine max HOM05D000549 ORTHO05D006874 4.1e-17 91.3 69 68.1
MSTRG.2466 Avicennia marina HOM05D000549 ORTHO05D006874 7.0e-17 90.5 62 69.4
Ca_11430_v3 Cicer arietinum L. HOM05D000549 ORTHO05D006874 7.0e-17 90.5 69 68.1
Ca_29860_v3 Cicer arietinum L. HOM05D000549 ORTHO05D006874 7.0e-17 90.5 69 68.1
Pp3c16_3210 Physcomitrium patens HOM05D000549 ORTHO05D006874 7.0e-17 90.5 79 62.0
SGA_v2.0_scaffold391G50614 Striga asiatica HOM05D000549 ORTHO05D006874 7.0e-17 90.5 62 69.4
ATR0582G102 Amborella trichopoda HOM05D000549 ORTHO05D006874 9.1e-17 90.1 69 63.8
LjContig00470g0027621 Lotus japonicus HOM05D000549 ORTHO05D006874 1.2e-16 89.7 62 74.2
HPP92_000335 Vanilla planifolia HOM05D000549 ORTHO05D006874 1.2e-16 89.7 75 62.7
Phvul.007G000700 Phaseolus vulgaris HOM05D000549 ORTHO05D006874 1.6e-16 89.4 62 72.6
Os01g0925200 Oryza sativa ssp. japonica HOM05D000549 ORTHO05D006874 2.7e-16 88.6 69 65.2
Psat6g243840 Pisum sativum HOM05D000549 ORTHO05D006874 7.7e-16 87.0 69 62.3
HanXRQChr05g0148171 Helianthus annuus HOM05D000549 ORTHO05D006874 1.3e-15 86.3 69 60.9
Zm00001eb363960 Zea mays HOM05D000549 ORTHO05D006874 1.7e-15 85.9 69 62.3
TPR.G417 Trifolium pratense HOM05D000549 ORTHO05D006874 2.9e-15 85.1 69 62.3
CAN.G254.3 Capsicum annuum HOM05D000549 ORTHO05D006874 1.1e-14 83.2 50 80.0
ECA234G0820 Erigeron canadensis HOM05D000549 ORTHO05D006874 4.2e-14 81.3 53 77.4
Mapoly0065s0040 Marchantia polymorpha HOM05D000549 ORTHO05D006874 2.1e-13 79.0 69 55.1
unitig_22.g5514 Utricularia gibba HOM05D000549 ORTHO05D006874 2.1e-13 79.0 69 59.4
SMO171G0023 Selaginella moellendorffii HOM05D000549 ORTHO05D006874 8.0e-13 77.0 62 66.1
CBR_g50345 Chara braunii HOM05D000549 ORTHO05D006874 1.5e-11 72.8 73 53.4
Cre10.g463150 Chlamydomonas reinhardtii HOM05D000549 ORTHO05D006874 4.5e-08 61.2 51 66.7
Cfa021869 Carpinus fangiana HOM05D002288 ORTHO05D002894 7.8e-08 60.5 62 45.2
Eucgr.H04595 Eucalyptus grandis HOM05D000549 ORTHO05D006874 1.5e-06 56.2 38 76.3
Nn3g17941 Nelumbo nucifera HOM05D000549 ORTHO05D006874 3.3e-06 55.1 31 80.6


User provided reference genes

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