Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 2.9e-160 568.5 295 100.0
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 2.1e-126 456.1 296 81.4
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.5e-124 449.9 299 82.3
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.7e-115 419.9 261 78.9
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 2.2e-115 419.5 279 77.4
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 6.3e-115 417.9 255 83.1
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 9.2e-114 414.1 246 82.9
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 9.2e-114 414.1 298 74.2
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 7.8e-113 411.0 259 79.2
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 7.8e-113 411.0 288 75.3
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.3e-112 410.2 248 82.3
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.7e-112 409.8 244 80.3
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.9e-112 409.1 248 81.9
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 8.6e-112 407.5 297 73.4
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 1.1e-111 407.1 300 72.3
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 3.3e-111 405.6 246 80.9
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.6e-111 404.8 250 81.6
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 3.1e-109 399.1 301 68.8
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 3.1e-109 399.1 302 67.9
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 5.2e-109 398.3 243 81.5
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 5.2e-109 398.3 302 70.2
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 2.6e-108 396.0 246 80.5
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 3.4e-108 395.6 308 67.9
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 4.4e-108 395.2 308 67.9
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 5.8e-108 394.8 281 72.2
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 5.8e-108 394.8 268 75.0
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 9.8e-108 394.0 270 73.3
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 9.8e-108 394.0 276 73.2
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.7e-107 393.3 276 72.8
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.2e-107 392.9 301 68.1
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 2.2e-107 392.9 278 73.4
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.9e-107 391.7 276 73.2
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 6.4e-107 391.3 341 63.0
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.9e-106 389.8 252 76.6
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.9e-106 389.8 277 72.6
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 1.9e-106 389.8 292 69.2
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 2.4e-106 389.4 262 75.2
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 3.2e-106 389.0 234 81.6
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 9.2e-106 387.5 243 78.2
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.2e-105 387.1 258 75.2
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 2.0e-105 386.3 261 73.9
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 2.7e-105 386.0 278 71.6
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.0e-104 384.0 261 73.6
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.3e-104 383.6 262 73.7
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.3e-104 383.6 244 75.8
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.3e-104 383.6 247 77.3
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.7e-104 383.3 249 74.3
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 2.3e-104 382.9 289 68.9
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 3.9e-104 382.1 286 69.9
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 3.9e-104 382.1 297 68.0
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 8.6e-104 380.9 295 68.5
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.1e-103 380.6 282 69.9
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 1.1e-103 380.6 250 75.2
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 1.5e-103 380.2 289 66.1
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.9e-103 379.8 286 66.1
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.5e-103 379.4 264 73.9
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 3.3e-103 379.0 289 65.7
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 9.5e-103 377.5 250 74.4
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 9.5e-103 377.5 249 75.1
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 1.2e-102 377.1 269 71.4
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 2.1e-102 376.3 263 73.8
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 2.8e-102 375.9 283 69.6
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 3.6e-102 375.6 282 68.4
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 4.7e-102 375.2 246 74.4
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.1e-101 374.0 282 67.7
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.4e-101 373.6 253 74.3
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.8e-101 373.2 244 75.8
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 4.0e-101 372.1 241 75.9
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 4.0e-101 372.1 296 64.9
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 8.9e-101 370.9 236 76.3
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.2e-100 370.5 242 74.4
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.2e-100 370.5 276 67.0
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.2e-100 370.5 248 74.6
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 2.0e-100 369.8 239 75.3
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 3.7e-99 365.5 302 62.6
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 3.7e-99 365.5 248 72.2
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 4.9e-99 365.2 287 66.9
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 6.4e-99 364.8 292 65.4
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 6.4e-99 364.8 277 67.1
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 3.2e-98 362.5 244 73.0
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 4.1e-98 362.1 253 70.0
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 1.0e-96 357.5 252 70.2
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 1.7e-96 356.7 248 68.5
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.7e-96 356.7 297 61.6
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 2.3e-96 356.3 244 71.3
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 5.1e-96 355.1 218 76.1
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 3.6e-94 349.0 261 66.3
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 4.0e-93 345.5 268 67.2
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 2.0e-92 343.2 270 68.1
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 9.2e-90 334.3 227 70.5
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 5.1e-88 328.6 212 76.9
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 6.6e-88 328.2 220 73.6
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 9.5e-87 324.3 226 74.3
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 1.6e-86 323.6 231 71.9
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 8.1e-86 321.2 260 63.1
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 2.4e-85 319.7 201 80.1
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 6.8e-85 318.2 233 66.5
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 2.0e-84 316.6 299 56.2
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 6.4e-83 311.6 272 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 7.1e-82 308.1 243 63.0
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 3.5e-81 305.8 244 61.1
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 3.9e-80 302.4 207 71.0
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 4.3e-79 298.9 206 72.8
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.2e-78 297.4 252 61.1
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 8.4e-75 284.6 175 80.0
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 4.6e-73 278.9 233 57.9
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.8e-69 266.9 291 53.6
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.9e-63 246.9 140 80.7
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 4.5e-52 209.1 149 73.2
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.5e-47 194.1 214 48.1
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 6.3e-46 188.7 232 44.0
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 2.5e-39 166.8 215 43.7
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.2e-38 163.7 164 57.3
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 1.2e-33 147.9 86 83.7
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 7.9e-33 145.2 137 55.5
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 3.0e-24 116.7 68 82.4
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.6e-20 104.4 64 78.1
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 1.6e-20 104.4 111 55.0
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 2.0e-20 104.0 82 57.3
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 3.5e-20 103.2 56 85.7
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 8.5e-19 98.6 68 61.8
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 9.4e-18 95.1 136 42.6
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.2e-15 88.2 63 69.8
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 4.4e-15 86.3 63 58.7
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 5.7e-15 85.9 74 62.2
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 7.5e-15 85.5 51 78.4
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 1.3e-14 84.7 170 36.5
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 8.3e-14 82.0 49 77.6
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 5.3e-13 79.3 47 80.9
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 1.2e-12 78.2 53 69.8
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 4.5e-12 76.3 175 34.3
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 4.2e-10 69.7 82 46.3
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 1.6e-09 67.8 43 67.4


User provided reference genes

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