Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 1.5e-119 433.0 230 100.0
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 2.4e-69 266.2 212 72.2
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 2.8e-65 252.7 235 66.0
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.4e-64 250.4 236 65.3
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 8.9e-64 247.7 236 65.3
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 9.8e-63 244.2 187 74.9
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 5.2e-56 221.9 235 57.0
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 4.4e-55 218.8 234 54.7
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.9e-53 213.4 251 52.6
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 1.2e-52 210.7 226 56.2
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 2.7e-52 209.5 234 52.6
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 3.5e-52 209.1 248 53.2
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 4.6e-52 208.8 236 53.0
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 2.3e-51 206.5 255 51.8
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 5.0e-51 205.3 225 55.1
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 5.6e-50 201.8 232 51.3
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 8.0e-49 198.0 206 57.8
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 2.3e-48 196.4 227 50.7
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 5.8e-47 191.8 235 49.8
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 7.0e-45 184.9 235 51.1
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 9.2e-45 184.5 250 47.2
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 9.2e-45 184.5 229 53.7
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 9.2e-45 184.5 226 51.3
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.6e-44 183.7 225 52.0
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 1.6e-44 183.7 226 51.8
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 2.1e-44 183.3 236 50.8
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 3.5e-44 182.6 248 47.2
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 3.5e-44 182.6 228 47.8
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.3e-43 180.6 228 51.3
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 3.9e-43 179.1 229 51.1
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 5.1e-43 178.7 247 47.8
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 5.1e-43 178.7 232 48.7
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 1.9e-42 176.8 231 48.9
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 3.3e-42 176.0 213 50.2
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 7.3e-42 174.9 232 48.7
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 3.6e-41 172.6 213 52.6
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 4.7e-41 172.2 207 49.8
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 6.2e-41 171.8 227 49.3
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.4e-40 170.6 224 51.3
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.5e-39 167.2 271 42.8
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 2.6e-39 166.4 222 46.8
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 4.4e-39 165.6 228 48.7
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 5.8e-39 165.2 234 45.3
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 1.3e-38 164.1 223 48.4
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.7e-38 163.7 223 46.6
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 1.7e-38 163.7 247 45.3
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 2.2e-38 163.3 227 45.8
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 2.9e-38 162.9 228 47.8
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.9e-38 162.9 228 47.8
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 4.9e-38 162.2 223 47.1
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 1.1e-37 161.0 246 46.3
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 2.4e-37 159.8 248 44.0
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 2.4e-37 159.8 239 46.0
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 7.1e-37 158.3 278 40.6
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 7.1e-37 158.3 210 47.1
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 1.6e-36 157.1 246 46.3
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 3.0e-35 152.9 220 45.0
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 3.0e-35 152.9 244 43.0
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.5e-34 150.6 167 52.7
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 3.3e-34 149.4 212 45.8
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 3.3e-34 149.4 233 42.1
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 4.3e-34 149.1 233 45.5
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 5.6e-34 148.7 220 45.9
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 7.3e-34 148.3 231 44.2
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 9.5e-34 147.9 233 42.5
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.6e-33 147.1 220 46.8
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 6.2e-33 145.2 227 42.7
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 8.1e-33 144.8 223 42.6
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.1e-32 144.4 224 42.9
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 1.4e-32 144.1 234 40.2
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 1.4e-32 144.1 234 40.2
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 1.8e-32 143.7 197 48.7
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 4.0e-32 142.5 223 44.4
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 5.2e-32 142.1 203 46.8
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 6.8e-32 141.7 224 43.8
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 1.5e-31 140.6 232 42.2
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 1.5e-31 140.6 216 43.5
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 3.4e-31 139.4 164 53.7
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 4.4e-31 139.0 230 41.7
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 7.6e-31 138.3 232 42.7
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 7.6e-31 138.3 201 45.3
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 1.7e-30 137.1 225 43.1
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 2.9e-30 136.3 225 41.8
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.9e-30 136.3 226 42.0
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.1e-29 134.4 204 45.1
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 1.9e-29 133.7 227 43.6
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 4.2e-29 132.5 227 40.1
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 4.2e-29 132.5 227 44.1
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.2e-28 131.0 185 44.9
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 4.6e-28 129.0 232 42.2
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 4.6e-28 129.0 225 40.9
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 4.6e-28 129.0 203 43.8
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 1.7e-27 127.1 229 42.4
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 1.7e-27 127.1 224 43.8
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 1.9e-26 123.6 222 44.1
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 2.5e-26 123.2 222 44.1
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 3.3e-26 122.9 222 41.9
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 5.6e-26 122.1 199 42.7
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 9.6e-26 121.3 218 43.6
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 1.6e-25 120.6 219 42.9
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 2.1e-25 120.2 219 44.3
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 4.8e-25 119.0 223 43.5
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 8.1e-25 118.2 236 40.3
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 1.8e-24 117.1 220 42.7
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 3.1e-24 116.3 223 40.8
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 2.0e-23 113.6 263 36.9
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 2.2e-22 110.2 150 48.0
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 2.9e-22 109.8 100 59.0
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 8.4e-22 108.2 161 44.1
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 2.4e-21 106.7 182 42.9
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 3.2e-21 106.3 230 37.0
Haze_23070 Corylus avellana HOM05D005900 ORTHO05D007306 1.6e-20 104.0 177 48.6
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 2.7e-20 103.2 221 37.6
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 1.3e-17 94.4 159 39.6
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 4.8e-17 92.4 152 42.8
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 6.2e-17 92.0 222 35.1
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 8.1e-17 91.7 152 42.1
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 3.4e-15 86.3 81 51.9
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 9.9e-15 84.7 174 36.2
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 1.9e-13 80.5 215 30.7
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 3.2e-13 79.7 71 53.5
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 9.3e-13 78.2 132 42.4
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 1.6e-12 77.4 185 33.0
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 8.1e-09 65.1 221 33.9
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 4.9e-06 55.8 234 30.3


User provided reference genes

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