Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p048724 Quercus lobata HOM05D000370 ORTHO05D011368 3.0e-114 415.2 217 100.0
QL05p089080 Quercus lobata HOM05D000370 ORTHO05D006313 1.2e-105 386.7 205 99.5
QL08p018247 Quercus lobata HOM05D000370 ORTHO05D006313 3.6e-91 338.6 210 88.1
CiPaw.02G129400 Carya illinoinensis HOM05D000370 ORTHO05D006313 1.1e-58 230.7 206 66.0
CiPaw.01G209200 Carya illinoinensis HOM05D000370 ORTHO05D006313 1.8e-58 229.9 203 66.5
Dinv20314 Davidia involucrata HOM05D000370 ORTHO05D006313 6.2e-51 204.9 206 60.7
Haze_16167 Corylus avellana HOM05D000370 ORTHO05D006313 5.3e-50 201.8 290 47.6
Prupe.3G027500 Prunus persica HOM05D000370 ORTHO05D006313 1.7e-48 196.8 217 58.1
Duzib192G0552 Durio zibethinus HOM05D000370 ORTHO05D006313 1.1e-47 194.1 204 58.8
TAR626G1046 Trochodendron aralioides HOM05D000370 ORTHO05D006313 2.4e-47 193.0 205 55.1
TWI12G1236 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 9.3e-47 191.0 200 59.5
Thecc.06G050400 Theobroma cacao HOM05D000370 ORTHO05D006313 2.7e-46 189.5 204 58.3
MD17G1157700 Malus domestica HOM05D000370 ORTHO05D006313 4.6e-46 188.7 204 58.3
Atru.chr3.4086 Acer truncatum HOM05D000370 ORTHO05D006313 7.9e-46 188.0 215 54.9
GSVIVG01029452001 Vitis vinifera HOM05D000370 ORTHO05D006313 1.0e-45 187.6 201 56.7
Gohir.A05G116100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.5e-44 183.7 179 60.3
Gorai.009G121000 Gossypium raimondii HOM05D000370 ORTHO05D006313 1.9e-44 183.3 179 60.3
Gohir.D05G117000 Gossypium hirsutum HOM05D000370 ORTHO05D006313 5.6e-44 181.8 179 59.8
Duzib235G0455 Durio zibethinus HOM05D000370 ORTHO05D006313 6.2e-43 178.3 204 55.4
CANSAT01G2135 Cannabis sativa HOM05D000370 ORTHO05D006313 9.0e-42 174.5 205 56.6
MD09G1169500 Malus domestica HOM05D000370 ORTHO05D006313 9.0e-42 174.5 204 55.9
Potri.007G003900 Populus trichocarpa HOM05D000370 ORTHO05D006313 1.2e-41 174.1 204 55.4
FAN02G0132 Fragaria x ananassa HOM05D000370 ORTHO05D006313 2.2e-40 169.9 205 54.6
FAN02G1594 Fragaria x ananassa HOM05D000370 ORTHO05D006313 2.2e-40 169.9 205 54.6
FAN09G0130 Fragaria x ananassa HOM05D000370 ORTHO05D006313 1.9e-39 166.8 205 54.1
PGR102G3330 Punica granatum HOM05D000370 ORTHO05D006313 1.9e-39 166.8 178 58.4
FvH4_6g36420 Fragaria vesca HOM05D000370 ORTHO05D006313 3.2e-39 166.0 205 53.7
FAN14G2100 Fragaria x ananassa HOM05D000370 ORTHO05D006313 9.3e-39 164.5 205 53.2
Sabra07G0002900 Salix brachista HOM05D000370 ORTHO05D006313 9.3e-39 164.5 191 57.1
Manes.14G000500 Manihot esculenta HOM05D000370 ORTHO05D006313 2.7e-38 162.9 188 55.9
TWI18G0896 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 2.7e-38 162.9 200 54.5
Eucgr.F04059 Eucalyptus grandis HOM05D000370 ORTHO05D006313 4.6e-38 162.2 178 56.7
FAN05G4541 Fragaria x ananassa HOM05D000370 ORTHO05D006313 7.9e-38 161.4 205 53.2
RcHm_v2.0_Chr2g0148391 Rosa chinensis HOM05D000370 ORTHO05D006313 1.3e-37 160.6 205 52.7
Nn8g41277 Nelumbo nucifera HOM05D000370 ORTHO05D006313 3.7e-35 152.5 202 49.5
Actinidia38821 Actinidia chinensis HOM05D000370 ORTHO05D006313 1.0e-32 144.4 183 53.0
CSS0048464 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 1.8e-29 133.7 137 61.3
THA.LOC104822748 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 1.1e-28 131.0 188 48.4
MELO3C019563.2 Cucumis melo HOM05D000370 ORTHO05D006313 7.4e-28 128.3 126 59.5
Sed0024696 Sechium edule HOM05D000370 ORTHO05D006313 1.6e-27 127.1 127 60.6
CsaV3_3G018040 Cucumis sativus L. HOM05D000370 ORTHO05D006313 1.4e-26 124.0 188 45.7
CSS0030510 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 4.1e-26 122.5 111 68.5
Sp3g11160 Schrenkiella parvula HOM05D000370 ORTHO05D006313 4.1e-26 122.5 194 42.3
BcaC05g29218 Brassica carinata HOM05D000370 ORTHO05D006313 1.2e-25 120.9 155 52.9
C05p54900 Brassica napus HOM05D000370 ORTHO05D006313 1.2e-25 120.9 155 52.9
BolC5t34160H Brassica oleracea HOM05D000370 ORTHO05D006313 1.2e-25 120.9 155 52.9
Carub.0003s1234 Capsella rubella HOM05D000370 ORTHO05D006313 1.2e-25 120.9 193 43.5
Sed0025802 Sechium edule HOM05D000370 ORTHO05D006313 1.2e-25 120.9 143 51.7
AT3G13000 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 2.0e-25 120.2 146 52.1
AUR62001306 Chenopodium quinoa HOM05D000370 ORTHO05D006313 2.0e-25 120.2 178 45.5
A03p37930 Brassica napus HOM05D000370 ORTHO05D006313 3.4e-25 119.4 112 59.8
BraA03t12947Z Brassica rapa HOM05D000370 ORTHO05D006313 3.4e-25 119.4 112 59.8
ATR0626G124 Amborella trichopoda HOM05D000370 ORTHO05D006313 5.9e-25 118.6 171 46.2
Aa31LG8G240 Aethionema arabicum HOM05D000370 ORTHO05D006313 1.0e-24 117.9 191 45.5
AL3G24720 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 1.0e-24 117.9 141 52.5
A05p36500 Brassica napus HOM05D000370 ORTHO05D006313 1.3e-24 117.5 140 52.1
BraA05t22451Z Brassica rapa HOM05D000370 ORTHO05D006313 1.3e-24 117.5 141 54.6
Thhalv10020358m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 1.3e-24 117.5 141 53.2
SEGI_40993 Sequoiadendron giganteum HOM05D000370 ORTHO05D006313 1.3e-24 117.5 167 50.9
CARHR087550 Cardamine hirsuta HOM05D000370 ORTHO05D006313 1.7e-24 117.1 115 60.0
AUR62025688 Chenopodium quinoa HOM05D000370 ORTHO05D006313 1.7e-24 117.1 145 49.0
C03p46040 Brassica napus HOM05D000370 ORTHO05D006313 2.2e-24 116.7 113 60.2
BolC3t16876H Brassica oleracea HOM05D000370 ORTHO05D006313 2.2e-24 116.7 113 60.2
Ah.08g218000 Amaranthus hybridus HOM05D000370 ORTHO05D006313 5.0e-24 115.5 177 45.8
EL10Ac7g18106 Beta vulgaris HOM05D000370 ORTHO05D006313 6.5e-24 115.2 145 49.0
MBI13_g09077_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D006313 3.2e-23 112.8 145 51.7
BcaB06g25494 Brassica carinata HOM05D000370 ORTHO05D006313 4.2e-23 112.5 141 53.9
vmacro18723 Vaccinium macrocarpon HOM05D000370 ORTHO05D006313 5.5e-23 112.1 207 41.1
Os06g0704100 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 1.6e-22 110.5 133 52.6
PSO170G0708 Papaver somniferum HOM05D000370 ORTHO05D006313 1.6e-22 110.5 201 42.3
Atru.chr7.1800 Acer truncatum HOM05D000370 ORTHO05D006313 2.1e-22 110.2 129 54.3
PSO063G1283 Papaver somniferum HOM05D000370 ORTHO05D006313 2.1e-22 110.2 201 41.8
ClCG05G010450 Citrullus lanatus HOM05D000370 ORTHO05D006313 4.6e-22 109.0 156 48.7
Duzib168G0938 Durio zibethinus HOM05D000370 ORTHO05D006313 3.0e-21 106.3 96 60.4
Gorai.001G018600 Gossypium raimondii HOM05D000370 ORTHO05D006313 3.0e-21 106.3 150 48.7
Duzib187G1680 Durio zibethinus HOM05D000370 ORTHO05D006313 5.1e-21 105.5 113 56.6
Sabra06G0167200 Salix brachista HOM05D000370 ORTHO05D006313 5.1e-21 105.5 96 60.4
Gohir.A07G018100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 6.7e-21 105.1 150 48.7
Zm00001eb227220 Zea mays HOM05D000370 ORTHO05D006313 1.9e-20 103.6 138 48.6
Thecc.09G067700 Theobroma cacao HOM05D000370 ORTHO05D006313 2.5e-20 103.2 91 62.6
Potri.006G216800 Populus trichocarpa HOM05D000370 ORTHO05D006313 3.3e-20 102.8 107 55.1
Gohir.D05G038700 Gossypium hirsutum HOM05D000370 ORTHO05D006313 7.4e-20 101.7 96 59.4
Gorai.009G039200 Gossypium raimondii HOM05D000370 ORTHO05D006313 7.4e-20 101.7 96 59.4
Gohir.A05G037200 Gossypium hirsutum HOM05D000370 ORTHO05D006313 2.8e-19 99.8 96 57.3
CDE04G3500 Ceratophyllum demersum HOM05D000370 ORTHO05D006313 4.8e-19 99.0 134 44.0
Rhsim08G0252100 Rhododendron simsii HOM05D000370 ORTHO05D006313 6.3e-19 98.6 210 39.5
THA.LOC104812341 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 8.2e-19 98.2 126 46.8
GSVIVG01014994001 Vitis vinifera HOM05D000370 ORTHO05D006313 1.4e-18 97.4 90 58.9
Eucgr.C00757 Eucalyptus grandis HOM05D000370 ORTHO05D006313 1.8e-18 97.1 143 45.5
CARHR151380 Cardamine hirsuta HOM05D000370 ORTHO05D011368 3.1e-18 96.3 87 59.8
COL.COLO4_21180 Corchorus olitorius HOM05D000370 ORTHO05D006313 4.1e-18 95.9 88 61.4
COL.COLO4_26817 Corchorus olitorius HOM05D000370 ORTHO05D006313 6.9e-18 95.1 164 43.3
Hund18552 Selenicereus undatus HOM05D000370 ORTHO05D006313 6.9e-18 95.1 88 61.4
QL05p089086 Quercus lobata HOM05D000370 ORTHO05D011368 9.1e-18 94.7 48 100.0
Aqoxy7G02562 Aquilegia oxysepala HOM05D000370 ORTHO05D006313 1.2e-17 94.4 162 38.3
AT1G16750 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 2.0e-17 93.6 122 50.8
Manes.03G054600 Manihot esculenta HOM05D000370 ORTHO05D006313 2.0e-17 93.6 100 55.0
CARHR017210 Cardamine hirsuta HOM05D000370 ORTHO05D006313 2.6e-17 93.2 101 55.4
Gohir.D07G017900 Gossypium hirsutum HOM05D000370 ORTHO05D006313 2.6e-17 93.2 166 43.4
AL1G28920 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 7.7e-17 91.7 94 58.5
HPP92_010810 Vanilla planifolia HOM05D000370 ORTHO05D006313 7.7e-17 91.7 91 57.1
Aa31LG7G1210 Aethionema arabicum HOM05D000370 ORTHO05D006313 1.7e-16 90.5 125 44.0
Thhalv10007325m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 2.9e-16 89.7 136 44.9
Sp1g14900 Schrenkiella parvula HOM05D000370 ORTHO05D006313 3.8e-16 89.4 95 55.8
THA.LOC104803715 Tarenaya hassleriana HOM05D011012 ORTHO05D011368 3.8e-16 89.4 106 51.9
Atru.chr3.3771 Acer truncatum HOM05D000080 ORTHO05D004954 5.0e-16 89.0 90 55.6
Carub.0001s1649 Capsella rubella HOM05D000370 ORTHO05D006313 5.0e-16 89.0 98 55.1
Thhalv10027222m.g Eutrema salsugineum HOM05D011012 ORTHO05D011368 8.5e-16 88.2 126 46.8
AL7G18440 Arabidopsis lyrata HOM05D011012 ORTHO05D011368 1.4e-15 87.4 126 46.8
BcaB03g13033 Brassica carinata HOM05D000370 ORTHO05D006313 1.4e-15 87.4 95 54.7
BcaC07g38812 Brassica carinata HOM05D000370 ORTHO05D006313 1.4e-15 87.4 109 51.4
CARHR241150 Cardamine hirsuta HOM05D011012 ORTHO05D011368 1.4e-15 87.4 127 47.2
Sp7g30870 Schrenkiella parvula HOM05D011012 ORTHO05D011368 1.9e-15 87.0 96 53.1
A01p05080 Brassica napus HOM05D011012 ORTHO05D011368 3.2e-15 86.3 127 45.7
BolC1t00535H Brassica oleracea HOM05D011012 ORTHO05D011368 3.2e-15 86.3 127 45.7
BraA01t00490Z Brassica rapa HOM05D011012 ORTHO05D011368 3.2e-15 86.3 127 45.7
C01p05550 Brassica napus HOM05D011012 ORTHO05D011368 4.2e-15 85.9 127 45.7
BcaC09g52116 Brassica carinata HOM05D011012 ORTHO05D011368 7.2e-15 85.1 123 46.3
A08p31290 Brassica napus HOM05D000370 ORTHO05D006313 7.2e-15 85.1 95 53.7
C08p17540 Brassica napus HOM05D000370 ORTHO05D006313 7.2e-15 85.1 175 38.3
BolC8t49380H Brassica oleracea HOM05D000370 ORTHO05D006313 7.2e-15 85.1 175 38.3
BraA08t35052Z Brassica rapa HOM05D000370 ORTHO05D006313 7.2e-15 85.1 95 53.7
RcHm_v2.0_Chr1g0315561 Rosa chinensis HOM05D000370 ORTHO05D011368 7.2e-15 85.1 150 42.7
AT4G33130 Arabidopsis thaliana HOM05D011012 ORTHO05D011368 9.4e-15 84.7 110 48.2
BcaC05g29217 Brassica carinata HOM05D000370 ORTHO05D006313 1.2e-14 84.3 105 54.3
Carub.0007s0733 Capsella rubella HOM05D011012 ORTHO05D011368 1.6e-14 84.0 192 37.5
Zm00001eb232490 Zea mays HOM05D000370 ORTHO05D006313 2.1e-14 83.6 122 45.9
Ciclev10010792m.g Citrus clementina HOM05D011012 ORTHO05D011368 4.6e-14 82.4 161 41.0
HPP92_027162 Vanilla planifolia HOM05D000370 ORTHO05D006313 1.4e-13 80.9 119 45.4
Sabra15G0073500 Salix brachista HOM05D011012 ORTHO05D011368 1.1e-12 77.8 89 48.3
Zm00001eb273360 Zea mays HOM05D000370 ORTHO05D006313 1.5e-12 77.4 86 53.5
Zm00001eb225950 Zea mays HOM05D000370 ORTHO05D006313 3.3e-12 76.3 86 53.5
ATR0006G027 Amborella trichopoda HOM05D011012 ORTHO05D011368 1.3e-11 74.3 100 48.0
Pp3c13_8290 Physcomitrium patens HOM05D000370 ORTHO05D006313 1.1e-10 71.2 172 40.1
Os06g0692800 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 1.8e-10 70.5 155 38.7
Pp3c3_3580 Physcomitrium patens HOM05D000370 ORTHO05D006313 2.6e-09 66.6 91 48.4
SHI27952 Sapria himalayana HOM05D000370 ORTHO05D006313 7.7e-09 65.1 92 42.4
Pp3c26_11890 Physcomitrium patens HOM05D000370 ORTHO05D006313 5.0e-08 62.4 94 45.7
SMO270G0082 Selaginella moellendorffii HOM05D000370 ORTHO05D006313 2.5e-07 60.1 119 42.0
Mapoly0008s0253 Marchantia polymorpha HOM05D001657 ORTHO05D001557 4.2e-07 59.3 84 40.5
MBI16_g27941_MAGBIO Magnolia biondii HOM05D011012 ORTHO05D011368 5.5e-07 58.9 61 54.1
Zm00001eb329690 Zea mays HOM05D001657 ORTHO05D001557 5.5e-07 58.9 84 40.5
Os07g0658300 Oryza sativa ssp. japonica HOM05D001657 ORTHO05D001557 1.2e-06 57.8 100 37.0
Pp3c9_17460 Physcomitrium patens HOM05D001657 ORTHO05D001557 1.2e-06 57.8 84 39.3
ATR0022G027 Amborella trichopoda HOM05D001657 ORTHO05D001557 1.6e-06 57.4 148 30.4
Nn7g36734 Nelumbo nucifera HOM05D001657 ORTHO05D001557 1.6e-06 57.4 81 42.0
Pp3c14_19250 Physcomitrium patens HOM05D000370 ORTHO05D006313 2.1e-06 57.0 178 30.3
AUR62000195 Chenopodium quinoa HOM05D001657 ORTHO05D001557 2.7e-06 56.6 84 40.5
DCAR_029989 Daucus carota HOM05D001657 ORTHO05D001557 2.7e-06 56.6 83 38.6
Gorai.010G042700 Gossypium raimondii HOM05D013611 ORTHO05D011368 2.7e-06 56.6 62 51.6
LjContig00564g0014509 Lotus japonicus HOM05D001657 ORTHO05D001557 2.7e-06 56.6 81 42.0
Aqoxy1G00368 Aquilegia oxysepala HOM05D001657 ORTHO05D001557 3.6e-06 56.2 155 27.7
CSS0024506 Camellia sinensis var. sinensis HOM05D001657 ORTHO05D001557 3.6e-06 56.2 81 40.7
AUR62006545 Chenopodium quinoa HOM05D001657 ORTHO05D001557 3.6e-06 56.2 84 40.5
Os03g0356638 Oryza sativa ssp. japonica HOM05D001657 ORTHO05D001557 3.6e-06 56.2 84 39.3
Aqoxy2G00389 Aquilegia oxysepala HOM05D001657 ORTHO05D001557 4.7e-06 55.8 83 39.8
EL10Ac4g10116 Beta vulgaris HOM05D001657 ORTHO05D001557 4.7e-06 55.8 84 39.3
MD03G1165400 Malus domestica HOM05D001657 ORTHO05D001557 4.7e-06 55.8 81 40.7
MD11G1184700 Malus domestica HOM05D001657 ORTHO05D001557 4.7e-06 55.8 81 40.7
Prupe.4G265200 Prunus persica HOM05D001657 ORTHO05D001557 4.7e-06 55.8 81 40.7
VMungo0647G0415 Vigna mungo HOM05D001657 ORTHO05D001557 4.7e-06 55.8 81 40.7
Atru.chr3.2890 Acer truncatum HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
Actinidia06967 Actinidia chinensis HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
arahy.Tifrunner.gnm1.ann1.P3YD5X Arachis hypogaea HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
arahy.Tifrunner.gnm1.ann1.Q6J55I Arachis hypogaea HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
CANSAT54G0751 Cannabis sativa HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
Cfa009859 Carpinus fangiana HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
CDE08G1603 Ceratophyllum demersum HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
Ciclev10017928m.g Citrus clementina HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
COL.COLO4_32772 Corchorus olitorius HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
Dinv15035 Davidia involucrata HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
Gohir.A13G218700 Gossypium hirsutum HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
Gohir.D13G222400 Gossypium hirsutum HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
Gorai.013G253500 Gossypium raimondii HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
Manes.02G138900 Manihot esculenta HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
Pp3c1_28560 Physcomitrium patens HOM05D000370 ORTHO05D006313 6.1e-06 55.5 91 41.8
Thecc.09G247900 Theobroma cacao HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 40.7
TWI75G1395 Tripterygium wilfordii HOM05D001657 ORTHO05D001557 6.1e-06 55.5 81 39.5
Ca_06195_v3 Cicer arietinum L. HOM05D001657 ORTHO05D001557 7.9e-06 55.1 81 39.5
Duzib150G0200 Durio zibethinus HOM05D001657 ORTHO05D001557 7.9e-06 55.1 81 40.7
Gohir.D03G111800 Gossypium hirsutum HOM05D013611 ORTHO05D011368 7.9e-06 55.1 115 38.3
Medtr5g089490 Medicago truncatula HOM05D001657 ORTHO05D001557 7.9e-06 55.1 81 39.5
Psat0ss3759g0080 Pisum sativum HOM05D001657 ORTHO05D001557 7.9e-06 55.1 81 39.5
Hund07435 Selenicereus undatus HOM05D001657 ORTHO05D001557 7.9e-06 55.1 84 39.3
Sc09g0001020 Simmondsia chinensis HOM05D001657 ORTHO05D001557 7.9e-06 55.1 84 39.3
Sc16g0011030 Simmondsia chinensis HOM05D001657 ORTHO05D001557 7.9e-06 55.1 84 39.3
TPR.G15861 Trifolium pratense HOM05D001657 ORTHO05D001557 7.9e-06 55.1 81 39.5
Zm00001eb017310 Zea mays HOM05D001657 ORTHO05D001557 7.9e-06 55.1 99 36.4


User provided reference genes

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