Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.3e-125 452.2 224 100.0
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 5.3e-106 387.9 226 85.0
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 7.2e-103 377.5 224 83.5
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.2e-102 376.7 216 84.3
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 8.0e-102 374.0 224 82.6
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 2.6e-100 369.0 224 80.8
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 5.7e-100 367.9 230 80.4
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 9.8e-100 367.1 224 80.8
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.1e-98 363.6 224 78.6
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 3.5e-97 358.6 222 77.9
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.5e-97 358.2 224 77.2
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 6.5e-96 354.4 215 80.0
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.2e-95 352.1 222 76.1
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 9.4e-95 350.5 217 79.7
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 9.4e-95 350.5 224 77.2
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 9.4e-95 350.5 224 76.3
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 1.0e-93 347.1 230 75.2
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.2e-92 343.6 225 75.1
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 2.6e-92 342.4 215 76.7
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 2.8e-91 339.0 218 76.1
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.1e-90 337.0 221 76.5
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.1e-90 337.0 221 76.9
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 3.1e-90 335.5 224 74.1
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 3.1e-90 335.5 224 74.1
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 2.0e-89 332.8 219 75.3
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.7e-89 332.4 218 76.1
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 1.0e-88 330.5 222 73.9
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.3e-88 330.1 216 74.1
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.7e-88 329.7 216 74.1
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 1.7e-88 329.7 216 74.1
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 3.8e-88 328.6 217 74.7
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 5.0e-88 328.2 214 74.8
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 1.9e-87 326.2 212 75.0
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.5e-87 325.9 281 60.5
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 3.3e-87 325.5 216 73.1
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 7.3e-87 324.3 216 72.7
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 9.5e-87 323.9 224 73.2
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 1.2e-86 323.6 215 74.4
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 3.6e-86 322.0 219 72.1
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 6.1e-86 321.2 213 70.0
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 6.1e-86 321.2 217 75.1
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 3.0e-85 318.9 213 73.2
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 1.5e-84 316.6 229 69.9
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 2.6e-84 315.8 216 73.1
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 4.4e-84 315.1 225 70.7
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.3e-83 313.5 222 65.8
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.7e-83 313.2 223 65.9
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 4.9e-83 311.6 218 71.1
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.4e-82 310.1 222 65.8
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.4e-82 310.1 217 71.9
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.8e-82 309.7 217 71.9
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 7.0e-82 307.8 217 71.4
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.2e-81 307.0 228 67.5
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 1.2e-81 307.0 225 65.8
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.2e-81 307.0 216 69.0
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 1.6e-81 306.6 218 70.2
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.6e-81 306.6 214 69.2
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 4.6e-81 305.1 217 70.5
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 1.3e-80 303.5 216 68.5
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.3e-80 303.5 216 70.8
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.7e-80 303.1 217 69.1
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.3e-80 302.8 207 75.4
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.3e-80 302.8 216 68.5
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 2.3e-80 302.8 215 69.8
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 2.3e-80 302.8 216 68.1
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 2.3e-80 302.8 217 67.3
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 3.0e-80 302.4 217 69.1
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 3.9e-80 302.0 217 67.3
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 5.0e-80 301.6 216 68.1
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 6.6e-80 301.2 216 67.6
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 6.6e-80 301.2 216 67.6
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 1.1e-79 300.4 218 67.4
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.1e-79 300.4 216 67.6
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.1e-79 300.4 217 68.7
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 1.5e-79 300.1 216 67.6
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 1.5e-79 300.1 216 67.6
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 5.6e-79 298.1 216 68.1
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 5.6e-79 298.1 213 68.5
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 5.6e-79 298.1 212 68.4
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.6e-78 296.6 220 65.5
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 2.1e-78 296.2 217 66.8
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 2.1e-78 296.2 216 68.5
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 2.1e-78 296.2 216 68.5
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 2.8e-78 295.8 218 68.8
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 3.6e-78 295.4 213 68.1
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 4.7e-78 295.0 218 68.3
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.0e-77 293.9 219 67.1
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.8e-77 293.1 207 66.2
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 2.3e-77 292.7 218 68.8
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 6.8e-77 291.2 216 66.7
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 8.9e-77 290.8 225 66.7
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 2.0e-76 289.7 214 67.8
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 4.4e-76 288.5 215 66.5
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 9.8e-76 287.3 217 67.3
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 1.4e-74 283.5 215 66.5
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 2.4e-74 282.7 215 65.1
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 2.7e-73 279.3 218 66.5
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 6.0e-73 278.1 203 69.0
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 3.0e-72 275.8 200 69.0
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 4.3e-71 271.9 170 78.8
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 2.8e-70 269.2 183 74.3
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 6.2e-70 268.1 193 69.4
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.4e-69 266.9 199 67.3
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 2.3e-69 266.2 206 62.1
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 3.1e-69 265.8 215 60.0
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.1e-69 265.8 171 77.8
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.5e-68 263.5 205 63.4
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.5e-68 263.5 205 63.4
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 1.5e-68 263.5 207 61.4
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 4.4e-68 261.9 201 60.7
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 4.4e-68 261.9 164 77.4
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 5.8e-68 261.5 149 85.9
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 8.3e-67 257.7 191 67.5
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 3.2e-66 255.8 216 60.6
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 4.1e-66 255.4 150 84.7
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.2e-65 253.8 215 57.7
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.1e-65 253.1 211 56.9
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.0e-64 250.8 213 56.3
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 5.1e-64 248.4 216 59.7
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.1e-62 243.0 224 58.5
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 3.1e-61 239.2 167 71.9
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 5.2e-61 238.4 224 58.0
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 4.4e-60 235.3 163 71.8
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.3e-59 233.8 213 54.5
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 3.7e-59 232.3 207 60.4
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.6e-57 226.9 208 53.4
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 3.3e-55 219.2 224 49.6
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 4.3e-55 218.8 218 55.0
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.2e-54 217.2 212 53.3
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.6e-54 215.7 168 60.7
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 1.1e-53 214.2 214 52.8
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 4.9e-51 205.3 202 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 6.4e-51 204.9 216 49.5
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 3.3e-47 192.6 218 50.9
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 5.3e-45 185.3 162 53.1
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.3e-43 180.6 224 44.2
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 4.2e-42 175.6 215 41.4
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.7e-40 170.2 157 56.1
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 1.1e-39 167.5 104 81.7
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.9e-39 166.8 125 70.4
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.5e-39 166.4 217 45.2
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.3e-39 165.6 203 45.3
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 1.3e-38 164.1 305 33.8
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 4.9e-35 152.1 89 82.0
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.1e-33 146.7 105 70.5
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 6.0e-33 145.2 209 38.8
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 7.9e-33 144.8 215 39.5
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 6.7e-32 141.7 215 38.6
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 6.9e-29 131.7 182 45.6
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 1.2e-25 120.9 127 46.5
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 3.0e-24 116.3 91 63.7
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 8.7e-24 114.8 177 40.1
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 5.7e-23 112.1 91 56.0
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 9.3e-18 94.7 204 37.7
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.4e-13 80.1 92 45.7
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 5.3e-13 79.0 68 58.8
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 6.7e-08 62.0 44 65.9
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.0e-07 60.5 44 70.5
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 3.3e-07 59.7 49 59.2


User provided reference genes

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