Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 4.1e-91 338.2 191 100.0
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 9.9e-61 237.3 193 70.5
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.6e-58 229.9 195 68.2
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.1e-54 217.2 203 66.0
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 6.5e-52 208.0 194 63.9
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.5e-52 208.0 192 62.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.2e-51 205.7 196 64.3
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 9.3e-51 204.1 202 60.4
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.2e-50 203.8 198 64.1
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.6e-50 203.4 192 62.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 4.6e-50 201.8 201 60.2
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 4.6e-50 201.8 193 61.7
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 6.0e-50 201.4 192 61.5
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.3e-49 199.5 192 61.5
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-48 197.2 192 60.9
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 7.4e-48 194.5 198 57.1
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 7.4e-48 194.5 193 57.0
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 9.6e-48 194.1 193 58.5
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.1e-46 190.7 191 62.8
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.4e-46 190.3 193 62.2
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 5.9e-45 184.9 191 61.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.7e-44 183.3 207 55.6
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.2e-44 183.0 198 54.5
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 3.2e-43 179.1 215 50.2
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 3.2e-43 179.1 188 51.6
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.2e-42 177.2 195 52.8
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.6e-42 176.8 194 53.1
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.6e-42 175.6 192 56.2
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.6e-42 175.3 191 58.1
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.1e-42 174.9 193 59.6
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 6.1e-42 174.9 193 59.6
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 6.1e-42 174.9 209 51.2
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-41 173.7 187 53.5
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.8e-41 173.3 214 57.5
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.8e-41 173.3 196 57.1
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.3e-41 172.9 198 54.5
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-41 172.6 192 56.2
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-41 172.6 192 56.2
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 3.0e-41 172.6 192 56.2
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 3.0e-41 172.6 193 54.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 3.0e-41 172.6 211 53.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.0e-41 172.6 206 48.1
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.9e-41 172.2 193 56.5
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-41 172.2 192 55.7
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-41 172.2 187 55.6
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.9e-41 172.2 205 47.8
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 5.1e-41 171.8 198 52.5
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 6.7e-41 171.4 192 55.7
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-40 170.6 192 55.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 2.5e-40 169.5 192 54.7
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 2.5e-40 169.5 193 52.3
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.3e-40 169.1 195 52.3
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 4.3e-40 168.7 187 54.5
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.7e-40 167.5 193 60.1
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.3e-39 167.2 195 54.9
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.3e-39 167.2 192 53.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.7e-39 165.6 194 54.1
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.8e-38 163.3 191 57.1
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.1e-38 162.5 197 52.8
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 4.1e-38 162.2 211 49.3
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 5.3e-38 161.8 192 55.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 6.9e-38 161.4 217 48.4
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.0e-37 159.8 191 47.1
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 3.4e-37 159.1 205 50.7
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 4.5e-37 158.7 210 47.1
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-36 157.1 209 48.8
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.3e-36 157.1 224 42.9
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-36 156.4 187 51.9
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.2e-36 156.4 200 48.0
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.9e-36 156.0 209 47.8
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 6.5e-36 154.8 189 49.2
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 8.5e-36 154.5 187 50.8
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.5e-36 154.5 201 47.3
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.1e-35 154.1 190 48.9
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.1e-35 154.1 213 46.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.4e-35 153.7 195 48.7
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.9e-35 153.3 193 51.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 7.2e-35 151.4 208 46.2
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 9.4e-35 151.0 208 47.6
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.6e-34 150.2 192 52.1
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 6.1e-34 148.3 211 46.4
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.1e-34 148.3 210 43.3
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 7.9e-34 147.9 172 53.5
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.4e-33 147.1 202 47.5
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.8e-33 146.7 200 49.5
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.3e-33 146.4 207 46.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.1e-33 145.2 211 48.3
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 6.7e-33 144.8 212 44.8
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.7e-33 144.8 193 50.3
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 6.7e-33 144.8 193 50.3
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 8.8e-33 144.4 180 48.9
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.1e-32 144.1 209 44.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.1e-32 144.1 203 46.3
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 2.0e-32 143.3 203 45.8
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.0e-32 143.3 193 49.7
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.6e-32 142.9 215 44.7
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 7.4e-32 141.4 214 45.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-31 140.2 168 53.0
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 2.8e-31 139.4 208 46.2
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 6.3e-31 138.3 203 43.3
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.4e-30 136.3 192 44.8
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.4e-30 136.3 186 47.3
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 5.3e-30 135.2 201 41.3
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.2e-29 134.0 196 46.4
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.2e-29 134.0 198 47.0
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.2e-29 134.0 192 47.9
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-29 132.9 168 52.4
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 3.4e-29 132.5 215 39.5
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 5.9e-29 131.7 187 49.2
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.0e-28 131.0 187 47.1
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.7e-28 130.2 194 50.0
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-28 129.8 168 51.8
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.2e-28 129.8 216 39.8
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 5.0e-28 128.6 194 48.5
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 8.5e-28 127.9 163 47.2
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.9e-27 126.7 211 38.9
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 3.2e-27 125.9 217 41.5
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 2.1e-26 123.2 189 45.0
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.7e-26 122.9 207 41.5
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 2.7e-26 122.9 213 44.1
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 3.6e-26 122.5 193 46.6
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 7.9e-26 121.3 206 39.3
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.8e-25 120.2 239 36.0
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.8e-25 120.2 202 39.1
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.8e-25 120.2 98 63.3
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.3e-25 119.8 230 37.4
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 5.2e-25 118.6 159 47.2
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 4.4e-24 115.5 183 43.2
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 5.7e-24 115.2 179 41.3
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 5.7e-24 115.2 191 35.6
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-23 114.0 184 39.7
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.3e-23 114.0 179 45.3
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.8e-23 112.8 209 36.8
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 3.7e-23 112.5 195 41.0
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 6.3e-23 111.7 189 42.9
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 6.3e-23 111.7 187 42.2
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 8.2e-23 111.3 249 34.9
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 8.2e-23 111.3 194 43.8
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-22 110.2 184 42.9
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.8e-22 110.2 184 42.9
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.8e-22 110.2 184 42.9
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.4e-22 109.8 191 35.6
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 2.4e-22 109.8 206 34.5
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.1e-22 109.4 186 45.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.1e-22 109.4 177 44.1
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.6e-21 107.1 208 40.4
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.6e-21 107.1 116 59.5
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.6e-21 106.3 155 49.0
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 5.9e-21 105.1 200 39.5
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-20 104.0 160 43.8
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-20 104.0 160 43.8
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 6.5e-20 101.7 160 39.4
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 6.5e-20 101.7 160 39.4
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 5.5e-19 98.6 200 37.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 9.4e-19 97.8 175 44.0
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-18 96.7 164 42.7
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.6e-18 95.9 74 66.2
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 3.6e-18 95.9 229 33.2
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 8.0e-18 94.7 70 70.0
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.0e-17 94.4 187 40.1
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 2.6e-16 89.7 188 37.8
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 6.3e-15 85.1 190 35.8
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.1e-14 84.3 68 55.9
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 3.1e-14 82.8 190 33.7
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 4.1e-14 82.4 193 35.8
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 4.1e-14 82.4 155 37.4
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.6e-10 70.5 190 33.7
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.6e-10 70.5 187 35.3
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.8e-09 67.0 190 32.6
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.0e-09 65.9 99 36.4
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 1.2e-08 64.3 194 33.0
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 1.2e-08 64.3 160 35.0
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.2e-08 64.3 43 72.1
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 7.5e-08 61.6 181 31.5
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 9.8e-08 61.2 182 30.8
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 9.8e-08 61.2 174 26.4
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 8.3e-07 58.2 177 33.3
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 8.3e-07 58.2 190 28.9
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 2.4e-06 56.6 200 25.5
Os09g0511200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 3.1e-06 56.2 186 24.7
Zm00001eb318090 Zea mays HOM05D015480 ORTHO05D019326 4.1e-06 55.8 188 23.4
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 7.0e-06 55.1 164 26.8
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 9.1e-06 54.7 207 29.0


User provided reference genes

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