Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 3.8e-138 495.0 274 100.0
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 4.8e-109 398.3 255 82.7
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 2.7e-104 382.5 255 76.5
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 1.0e-103 380.6 254 74.4
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 2.6e-102 375.9 256 74.6
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 4.8e-101 371.7 240 77.9
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 6.3e-101 371.3 247 73.3
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 2.3e-98 362.8 238 75.2
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.5e-97 360.1 242 75.2
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 1.9e-97 359.8 249 73.9
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 9.5e-97 357.5 255 71.4
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 9.5e-97 357.5 245 72.2
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 1.2e-96 357.1 234 75.2
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 1.6e-96 356.7 238 75.2
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 2.8e-96 355.9 233 75.5
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 3.6e-96 355.5 259 69.5
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 1.4e-95 353.6 234 73.9
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.3e-95 352.8 255 70.6
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 4.0e-95 352.1 224 76.8
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 4.0e-95 352.1 255 70.6
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 6.8e-95 351.3 253 71.1
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 1.5e-94 350.1 235 76.2
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.0e-94 349.7 240 72.1
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.6e-94 349.4 255 69.8
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 3.4e-94 349.0 232 75.0
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 5.7e-94 348.2 251 70.5
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 2.2e-93 346.3 257 67.7
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 4.9e-93 345.1 258 68.6
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 3.1e-92 342.4 397 52.6
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 3.1e-92 342.4 246 72.0
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 7.0e-92 341.3 253 68.4
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 9.2e-92 340.9 242 71.5
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.2e-91 340.5 252 68.7
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 2.0e-91 339.7 229 73.4
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.7e-91 339.3 229 73.4
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.0e-90 337.4 252 69.0
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 1.3e-90 337.0 256 68.0
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.7e-90 336.7 237 71.7
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 1.7e-90 336.7 229 72.9
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 2.3e-90 336.3 243 71.2
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 5.0e-90 335.1 245 70.6
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 8.6e-90 334.3 237 71.3
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 8.6e-90 334.3 255 69.4
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 4.7e-88 328.6 254 66.1
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 8.0e-88 327.8 251 66.9
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.4e-87 327.0 226 69.0
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.4e-87 327.0 226 69.0
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 1.8e-87 326.6 268 66.4
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 2.3e-87 326.2 226 69.5
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 3.0e-87 325.9 222 70.7
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 4.0e-87 325.5 253 67.6
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 6.8e-87 324.7 236 70.8
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 1.5e-86 323.6 244 68.4
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 2.0e-86 323.2 252 64.3
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 2.0e-86 323.2 219 69.4
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 4.4e-86 322.0 204 76.5
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 5.7e-86 321.6 223 68.6
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.3e-85 320.5 252 64.3
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 2.9e-85 319.3 242 66.1
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 3.7e-85 318.9 253 66.4
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 6.4e-85 318.2 251 66.1
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 1.1e-84 317.4 253 66.0
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 1.4e-84 317.0 213 70.0
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 1.4e-84 317.0 218 74.3
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 1.4e-84 317.0 237 68.8
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 1.8e-84 316.6 255 61.2
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.8e-84 316.6 242 67.8
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 3.2e-84 315.8 213 68.5
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 2.0e-83 313.2 218 73.9
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 3.5e-83 312.4 239 63.6
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 1.0e-82 310.8 248 69.4
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 1.3e-82 310.5 213 69.0
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 3.9e-82 308.9 206 73.3
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 1.1e-81 307.4 226 69.0
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 3.3e-81 305.8 208 70.2
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 4.3e-81 305.4 227 70.9
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 5.6e-81 305.1 235 64.7
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 1.6e-80 303.5 213 68.1
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 2.1e-80 303.1 239 62.8
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 2.1e-80 303.1 209 67.9
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 2.1e-80 303.1 222 68.0
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 2.8e-80 302.8 229 65.1
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 3.6e-80 302.4 235 63.8
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 6.2e-80 301.6 241 61.8
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 6.2e-80 301.6 238 64.7
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 8.0e-80 301.2 226 62.8
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 8.0e-80 301.2 219 65.8
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.1e-79 300.8 240 64.2
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 4.0e-79 298.9 209 67.9
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 4.0e-79 298.9 209 67.9
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 4.0e-79 298.9 189 76.7
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 8.3e-77 291.2 250 61.2
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 1.1e-76 290.8 248 60.1
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 2.4e-76 289.7 233 64.4
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 5.4e-76 288.5 249 59.8
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 1.2e-75 287.3 186 71.5
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 4.0e-63 245.7 182 67.0
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 5.4e-60 235.3 208 58.2
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 1.2e-59 234.2 202 58.9
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 6.0e-59 231.9 227 53.7
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 3.3e-57 226.1 223 50.7
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 6.9e-55 218.4 213 57.7
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.2e-51 207.6 153 71.2
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 4.9e-45 185.7 232 44.0
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 1.6e-43 180.6 115 72.2
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 2.0e-38 163.7 98 79.6
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 1.6e-35 154.1 101 72.3
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 4.3e-33 146.0 114 57.0
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 7.9e-27 125.2 92 72.8
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 1.8e-18 97.4 160 37.5
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 7.4e-09 65.5 163 31.3
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 1.4e-07 61.2 163 30.1
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 1.8e-07 60.8 181 23.8
Duzib138G1359 Durio zibethinus HOM05D001530 ORTHO05D003676 1.5e-06 57.8 215 25.6


User provided reference genes

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